Gene loci information

Isoforms of this gene

  • There are 13 isoforms that are expressed from this gene.
  • The longest transcript is g17272.t1
  • List of isoforms

g17272.t1, g17272.t2, g17272.t3, g17272.t4, g17272.t5, g17272.t6, g17272.t7, g17272.t8, g17272.t9, g17272.t10, g17272.t11, g17272.t12, g17272.t13

The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively.

KEGG

Orthology

Pathway

  • This gene belongs to the following 1 pathways
ko00071
ko00280
ko01100
ko01110
ko01212
ko03320
ko04936

This gene has too many mapped pathways (>3). Please look at the original KEGG entry above for pathway visualization.

Gene conservation patterns

Diptera wide analysis

The Orthogroup for the longest transcript (g17272.t1) is OG0004374. Other genes in this orthogroup contains the following. This list is ordered by phylogeny determined by OrthoFinder analysis. Genes from ENSEMBL are linked to their corresponding pages. For P. nubifer and P. vanderplanki, they are linked to the Midgebase1 and Midgebase2 pages.

Conservation

Organism Abb. ID No. Orthologs Ortholog ID
Atta cephalotes ACEPH 1 XP_012060938.1
Apis mellifera AMELL 1 GB42141-PA
Culicoides sonorensis CSONO 1 CSON013491-1
Polypedilum nubifer PNUBI 0 none
Polypedilum vanderplanki PVAND 3 g17272.t1, g15573.t1, g14452.t1
Polypedilum pembai PPEMB 2 g802.t1, g11590.t1
Belgica antarctica BANTA 0 none
Clunio marinus CMARI 1 CRL00048.1
Aedes aegypti lvpagwg AAEGYL 1 AAEL014452-PA
Culex quinquefasciatus quinquefasciatus CQUINQ 1 EDS30505.1
Culex quinquefasciatus CQUIN 1 CPIJ008217-PA
Anopheles atroparvus AATRO 1 AATE000572-PA
Anopheles sinensis china ASINEC 1 ASIC012970-PA
Anopheles dirus ADIRU 1 ADIR006904-PA
Anopheles farauti AFARA 1 AFAF005604-PA
Anopheles epiroticus AEPIR 1 AEPI006448-PA
Anopheles christyi ACHRI 1 ACHR009971-PA
Anopheles merus AMERU 1 AMEM004213-PA
Anopheles melas AMELA 1 AMEC017082-PA
Anopheles arabiensis AARAB 1 AARA005738-PA
Anopheles coluzzii ACOLU 1 ACOM038840-PA
Anopheles coluzzii ngousso ACOLUN 1 ACON005662-PA
Anopheles gambiae AGAMB 1 AGAP005662-PA
Anopheles quadriannulatus AQUAD 1 AQUA011199-PA
Anopheles minimus AMINI 1 AMIN010169-PA
Anopheles culicifacies ACULI 1 ACUA024966-PA
Anopheles funestus AFUNE 1 AFUN004890-PA
Anopheles stephensi indian ASTEPI 1 ASTEI02252-PA
Anopheles stephensi ASTEP 1 ASTE009570-PA
Anopheles albimanus AALBI 1 AALB005824-PA
Anopheles darlingi ADARL 1 ADAC005257-PA
Drosophila willistoni DWILL 1 FBpp0253038
Drosophila pseudoobscura DPSEU 1 FBpp0274911
Drosophila persimilis DPERS 1 FBpp0189202
Drosophila ananassae DANAN 1 FBpp0113848
Drosophila melanogaster DMELA 1 FBpp0076520
Drosophila sechellia DSECH 1 FBpp0206474
Drosophila simulans DSIMU 1 FBpp0212432
Drosophila erecta DEREC 1 FBpp0132991
Drosophila yakuba DYAKU 1 FBpp0266646
Drosophila virilis DVIRI 2 FBpp0225899, FBpp0233977
Drosophila mojavensis DMOJA 1 FBpp0161467
Drosophila grimshawi DGRIM 1 FBpp0148610
Lucilia cuprina LCUPR 1 KNC31868
Musca domestica MDOME 1 MDOA007352-PA
Stomoxys calcitrans SCALC 1 SCAU000637-PA
Glossina brevipalpis GBREV 1 GBRI018471-PA
Glossina palpalis GPALP 1 GPPI022452-PA
Glossina austeni GAUST 1 GAUT011179-PA
Glossina pallidipes GPALL 1 GPAI009790-PA
Glossina morsitans GMORS 1 GMOY011989-PA

Gene tree

Chironomidae-wide analysis

The Orthogroup for the longest transcript (g17272.t1) is OG0000403. Other genes in this orthogroup contains the following. [This data uses ab initio gene models predicted in Yoshida et al 2022, so most genes are not registered in public databases. Please contact the authors for more information on these data.]

Conservation

Organism Abb. ID Ortholog ID
Podonomus sp PODON TRINITY_DN22468_c0_g1_i1.p2, TRINITY_DN3188_c0_g1_i1.p1, TRINITY_DN107711_c0_g1_i1.p1, TRINITY_DN3188_c5_g1_i1.p2, TRINITY_DN128587_c0_g1_i1.p1, TRINITY_DN12378_c0_g1_i1.p1
Parochlus steinenii PSTEI PSG03745
Trissopelopia nemorum TNEMO TRINITY_DN3280_c0_g2_i3.p1, TRINITY_DN3968_c0_g1_i11.p1, TRINITY_DN11914_c0_g1_i1.p1, TRINITY_DN295_c0_g1_i9.p1, TRINITY_DN11237_c0_g1_i5.p1, TRINITY_DN1967_c1_g1_i1.p1, TRINITY_DN1967_c0_g1_i11.p1, TRINITY_DN24074_c0_g1_i1.p1
Paraheptagyia tonnoiri PTONN TRINITY_DN1778_c0_g1_i2.p1
Telmatogeton pecinata TPECI TRINITY_DN70536_c0_g1_i1.p1, TRINITY_DN1216_c10_g1_i1.p1, TRINITY_DN1362_c0_g1_i1.p1, TRINITY_DN0_c3737_g1_i1.p1
Cricotopus draysoni CDRAY TRINITY_DN97180_c0_g1_i1.p2, TRINITY_DN40364_c0_g1_i1.p1, TRINITY_DN19128_c0_g1_i1.p1, TRINITY_DN13271_c0_g1_i1.p1, TRINITY_DN25880_c0_g1_i1.p1, TRINITY_DN26059_c0_g1_i1.p1, TRINITY_DN58_c0_g1_i1.p1, TRINITY_DN84168_c0_g1_i1.p1, TRINITY_DN103918_c0_g1_i1.p2
Clunio marinus CMARI CRL00048.1
Cardiocladius sp CARDI TRINITY_DN3964_c0_g1_i3.p1, TRINITY_DN49593_c0_g1_i1.p2, TRINITY_DN4184_c0_g1_i2.p1
Belgica antarctica BANTA none
Kiefferophyes invenustulus KINVE TRINITY_DN35414_c0_g1_i1.p1, TRINITY_DN33557_c0_g1_i1.p1, TRINITY_DN190498_c0_g1_i1.p1, TRINITY_DN734_c0_g2_i8.p1, TRINITY_DN35414_c1_g1_i1.p1, TRINITY_DN26356_c0_g5_i1.p1, TRINITY_DN734_c0_g1_i2.p1, TRINITY_DN35414_c2_g1_i1.p1, TRINITY_DN73340_c0_g1_i2.p1, TRINITY_DN26356_c0_g1_i1.p1, TRINITY_DN26356_c0_g3_i1.p1, TRINITY_DN26356_c0_g2_i1.p1, TRINITY_DN57425_c1_g1_i2.p1, TRINITY_DN734_c3_g2_i1.p2, TRINITY_DN734_c3_g1_i1.p1, TRINITY_DN179971_c0_g1_i1.p2, TRINITY_DN26356_c0_g4_i1.p1, TRINITY_DN241215_c0_g1_i1.p1, TRINITY_DN206238_c0_g1_i1.p1
Chironomus riparius CRIPA g6498.t1, g1192.t1, g1117.t1
Chironomus columbiensis CCOLU TRINITY_DN84770_c0_g1_i1.p1, TRINITY_DN8037_c0_g1_i1.p1, TRINITY_DN62545_c0_g1_i1.p1, TRINITY_DN81132_c0_g1_i1.p1, TRINITY_DN7204_c0_g1_i3.p1, TRINITY_DN13679_c0_g1_i3.p1, TRINITY_DN15314_c0_g1_i1.p1, TRINITY_DN7726_c0_g1_i5.p1, TRINITY_DN349_c3_g1_i1.p2, TRINITY_DN58850_c0_g1_i1.p1, TRINITY_DN13447_c0_g1_i1.p2, TRINITY_DN10757_c0_g1_i4.p1, TRINITY_DN61491_c0_g1_i1.p1, TRINITY_DN349_c0_g1_i24.p1
Chironomus tentans CTENT g2108.t1, g2107.t1
Chironomus dilutus CDILU TRINITY_DN264_c0_g1_i7.p1
Polypedilum nubifer PNUBI Pn.14256, Pn.11276, Pn.07842
Polypedilum vanderplanki PVAND g17272.t1, g15573.t1, g14452.t1
Polypedilum pembai PPEMB g802.t1, g11590.t1
Culicoides sonorensis CSONO CSON013491-1
Aedes aegypti lvpagwg AAEGYL AAEL014452-PA
Anopheles gambiae AGAMB AGAP005662-PA

Gene tree

Expression profile for this gene

Gene-level expression profile

Raw TPM values

Expression profile of isoforms

A heatmap representing isoforms with TPM > 0 in at least one sample. Expression profiles were are clustered based on the spearman correlation