Gene loci information

Transcript annotation

  • This transcript has been annotated as Peptidyl-prolyl cis-trans isomerase-like 1.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_4 g17451 g17451.t1 TTS g17451.t1 13573567 13573567
chr_4 g17451 g17451.t1 isoform g17451.t1 13573624 13574377
chr_4 g17451 g17451.t1 exon g17451.t1.exon1 13573624 13573826
chr_4 g17451 g17451.t1 cds g17451.t1.CDS1 13573624 13573826
chr_4 g17451 g17451.t1 exon g17451.t1.exon2 13574008 13574252
chr_4 g17451 g17451.t1 cds g17451.t1.CDS2 13574008 13574252
chr_4 g17451 g17451.t1 exon g17451.t1.exon3 13574313 13574377
chr_4 g17451 g17451.t1 cds g17451.t1.CDS3 13574313 13574377
chr_4 g17451 g17451.t1 TSS g17451.t1 13574464 13574464

Sequences

>g17451.t1 Gene=g17451 Length=513
ATGGCAAATCAAAGCGGAATCCCTGATAAAATGTGGCAACCACCACTTGTAGCTTTTGAA
ACAAATCTTGGAGATTTCTCAGTTGAACTTTATTGGAAACACGCACCAAATACTTGCAGA
AATTTCGCTGAACTTGCACGTCGTGGTTATTACAATGATGTTGTTTTTCATAGAATTATT
GCTGATTTTATGATTCAAGGAGGTGATCCGACCGGCACTGGAAGAGGAGGAAGTTCAATT
TATGGACCAACATTTGCTGATGAATTTCATCCAGACTTAAGACATACTGGAGCTGGAATT
TTGTCCATGGCTAATGCTGGACCTAATACAAATGGCAGTCAATTTTTTATCACTCTCGCT
CCATGTCAACATTTGGACTCAAAGCATACAATTTTTGGAAGAATTCATAGTGGAATGCAA
GTTATTAAAAGAATTGGAAATGTTGAAACTGACAACAATGATCGACCACTTGAACCTGTT
AAAATTATTAGTGCTAAAATTGATAAATATTAA

>g17451.t1 Gene=g17451 Length=170
MANQSGIPDKMWQPPLVAFETNLGDFSVELYWKHAPNTCRNFAELARRGYYNDVVFHRII
ADFMIQGGDPTGTGRGGSSIYGPTFADEFHPDLRHTGAGILSMANAGPNTNGSQFFITLA
PCQHLDSKHTIFGRIHSGMQVIKRIGNVETDNNDRPLEPVKIISAKIDKY

Protein features from InterProScan

Transcript Database ID Name Start End E.value
10 g17451.t1 Gene3D G3DSA:2.40.100.10 - 5 168 5.3E-75
2 g17451.t1 PANTHER PTHR45625 PEPTIDYL-PROLYL CIS-TRANS ISOMERASE-RELATED 20 166 1.5E-76
3 g17451.t1 PANTHER PTHR45625:SF5 PEPTIDYLPROLYL ISOMERASE DOMAIN AND WD REPEAT-CONTAINING PROTEIN 1 20 166 1.5E-76
11 g17451.t1 PIRSF PIRSF001467 Peptidylpro_ismrse 7 169 2.2E-68
5 g17451.t1 PRINTS PR00153 Cyclophilin peptidyl-prolyl cis-trans isomerase signature 30 45 1.1E-30
7 g17451.t1 PRINTS PR00153 Cyclophilin peptidyl-prolyl cis-trans isomerase signature 56 68 1.1E-30
8 g17451.t1 PRINTS PR00153 Cyclophilin peptidyl-prolyl cis-trans isomerase signature 99 114 1.1E-30
4 g17451.t1 PRINTS PR00153 Cyclophilin peptidyl-prolyl cis-trans isomerase signature 114 126 1.1E-30
6 g17451.t1 PRINTS PR00153 Cyclophilin peptidyl-prolyl cis-trans isomerase signature 127 142 1.1E-30
1 g17451.t1 Pfam PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD 17 166 7.4E-54
12 g17451.t1 ProSitePatterns PS00170 Cyclophilin-type peptidyl-prolyl cis-trans isomerase signature. 51 68 -
13 g17451.t1 ProSiteProfiles PS50072 Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain profile. 20 167 34.565
9 g17451.t1 SUPERFAMILY SSF50891 Cyclophilin-like 16 167 2.05E-65

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0006457 protein folding BP
GO:0003755 peptidyl-prolyl cis-trans isomerase activity MF
GO:0000413 protein peptidyl-prolyl isomerization BP

KEGG

Orthology

Pathway

  • This transcript belongs to the following pathways

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.

Raw TPM values