Gene loci information

Isoforms of this gene

  • There are 1 isoforms that are expressed from this gene.
  • The longest transcript is g17451.t1
  • List of isoforms

g17451.t1

The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively.

KEGG

Orthology

Pathway

  • This gene belongs to the following 1 pathways
ko03040

Gene conservation patterns

Diptera wide analysis

The Orthogroup for the longest transcript (g17451.t1) is OG0001258. Other genes in this orthogroup contains the following. This list is ordered by phylogeny determined by OrthoFinder analysis. Genes from ENSEMBL are linked to their corresponding pages. For P. nubifer and P. vanderplanki, they are linked to the Midgebase1 and Midgebase2 pages.

Conservation

Organism Abb. ID No. Orthologs Ortholog ID
Atta cephalotes ACEPH 2 XP_012063735.1, XP_012059159.1
Apis mellifera AMELL 4 GB51726-PA, GB41018-PA, GB49712-PA, GB55023-PA
Culicoides sonorensis CSONO 2 CSON003419-1, CSON000603-1
Polypedilum nubifer PNUBI 3 Pn.09317, Pn.16546, Pn.15711
Polypedilum vanderplanki PVAND 3 g6184.t1, g6183.t1, g17451.t1
Polypedilum pembai PPEMB 1 g2387.t1
Belgica antarctica BANTA 1 IU25_08898-mRNA-1
Clunio marinus CMARI 2 CRL08279.1, CRK86357.1
Aedes aegypti lvpagwg AAEGYL 2 AAEL007062-PA, AAEL007061-PA
Culex quinquefasciatus quinquefasciatus CQUINQ 3 EDS39552.1, EDS39555.1, EDS39554.1
Culex quinquefasciatus CQUIN 3 CPIJ014091-PA, CPIJ014089-PA, CPIJ014092-PA
Anopheles atroparvus AATRO 1 AATE016146-PA
Anopheles sinensis china ASINEC 2 ASIC018010-PA, ASIC018011-PA
Anopheles dirus ADIRU 1 ADIR000554-PA
Anopheles farauti AFARA 0 none
Anopheles epiroticus AEPIR 2 AEPI014306-PA, AEPI007064-PA
Anopheles christyi ACHRI 1 ACHR007959-PA
Anopheles merus AMERU 1 AMEM018320-PA
Anopheles melas AMELA 2 AMEC019090-PA, AMEC023137-PA
Anopheles arabiensis AARAB 2 AARA003452-PA, AARA003451-PA
Anopheles coluzzii ACOLU 1 ACOM026180-PA
Anopheles coluzzii ngousso ACOLUN 2 ACON012376-PA, ACON012377-PA
Anopheles gambiae AGAMB 2 AGAP012376-PA, AGAP012377-PA
Anopheles quadriannulatus AQUAD 2 AQUA017101-PA, AQUA017102-PA
Anopheles minimus AMINI 1 AMIN008948-PA
Anopheles culicifacies ACULI 2 ACUA021691-PA, ACUA026035-PA
Anopheles funestus AFUNE 2 AFUN021527-PA, AFUN021526-PA
Anopheles stephensi indian ASTEPI 2 ASTEI02335-PA, ASTEI02334-PA
Anopheles stephensi ASTEP 1 ASTE004601-PA
Anopheles albimanus AALBI 1 AALB003788-PA
Anopheles darlingi ADARL 2 ADAC008602-PA, ADAC008605-PA
Drosophila willistoni DWILL 1 FBpp0249679
Drosophila pseudoobscura DPSEU 1 FBpp0277873
Drosophila persimilis DPERS 1 FBpp0186705
Drosophila ananassae DANAN 1 FBpp0128231
Drosophila melanogaster DMELA 1 FBpp0072463
Drosophila sechellia DSECH 1 FBpp0195750
Drosophila simulans DSIMU 1 FBpp0224104
Drosophila erecta DEREC 1 FBpp0133203
Drosophila yakuba DYAKU 1 FBpp0266027
Drosophila virilis DVIRI 1 FBpp0237844
Drosophila mojavensis DMOJA 1 FBpp0381533
Drosophila grimshawi DGRIM 1 FBpp0408088
Lucilia cuprina LCUPR 1 KNC23876
Musca domestica MDOME 1 MDOA010490-PA
Stomoxys calcitrans SCALC 1 SCAU015250-PA
Glossina brevipalpis GBREV 1 GBRI013777-PA
Glossina palpalis GPALP 1 GPPI010221-PA
Glossina austeni GAUST 1 GAUT024979-PA
Glossina pallidipes GPALL 1 GPAI025159-PA
Glossina morsitans GMORS 0 none

Gene tree

Chironomidae-wide analysis

The Orthogroup for the longest transcript (g17451.t1) is OG0003336. Other genes in this orthogroup contains the following. [This data uses ab initio gene models predicted in Yoshida et al 2022, so most genes are not registered in public databases. Please contact the authors for more information on these data.]

Conservation

Organism Abb. ID Ortholog ID
Podonomus sp PODON TRINITY_DN2137_c0_g1_i7.p1, TRINITY_DN0_c1744_g1_i1.p2
Parochlus steinenii PSTEI PSG03238
Trissopelopia nemorum TNEMO TRINITY_DN28929_c0_g1_i1.p1, TRINITY_DN6739_c0_g1_i1.p1
Paraheptagyia tonnoiri PTONN TRINITY_DN4081_c0_g1_i1.p1
Telmatogeton pecinata TPECI TRINITY_DN24082_c0_g1_i1.p1
Cricotopus draysoni CDRAY TRINITY_DN40204_c0_g1_i1.p1, TRINITY_DN92379_c0_g1_i1.p1, TRINITY_DN10862_c0_g1_i1.p1, TRINITY_DN97155_c0_g1_i1.p1, TRINITY_DN90271_c0_g1_i1.p1
Clunio marinus CMARI CRL08279.1
Cardiocladius sp CARDI TRINITY_DN646_c0_g2_i2.p1
Belgica antarctica BANTA IU25_08898-mRNA-1
Kiefferophyes invenustulus KINVE TRINITY_DN47751_c0_g2_i4.p1, TRINITY_DN210928_c0_g1_i1.p1
Chironomus riparius CRIPA g15259.t1, g13944.t1
Chironomus columbiensis CCOLU TRINITY_DN57909_c0_g1_i1.p1, TRINITY_DN8724_c0_g1_i2.p1, TRINITY_DN75644_c0_g1_i1.p1
Chironomus tentans CTENT g1790.t1, g15308.t1
Chironomus dilutus CDILU TRINITY_DN3650_c0_g2_i1.p1, TRINITY_DN3650_c0_g1_i1.p1
Polypedilum nubifer PNUBI Pn.09317, Pn.16546
Polypedilum vanderplanki PVAND g17451.t1
Polypedilum pembai PPEMB g2387.t1
Culicoides sonorensis CSONO none
Aedes aegypti lvpagwg AAEGYL AAEL007061-PA
Anopheles gambiae AGAMB AGAP012376-PA

Gene tree

Expression profile for this gene

Gene-level expression profile

Raw TPM values

Expression profile of isoforms

A heatmap representing isoforms with TPM > 0 in at least one sample. Expression profiles were are clustered based on the spearman correlation