Gene loci information

Transcript annotation

  • This transcript has been annotated as GDP-Man:Man(3)GlcNAc(2)-PP-Dol alpha-1,2-mannosyltransferase.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_3 g194 g194.t3 TSS g194.t3 1640059 1640059
chr_3 g194 g194.t3 isoform g194.t3 1640190 1641991
chr_3 g194 g194.t3 exon g194.t3.exon1 1640190 1640403
chr_3 g194 g194.t3 exon g194.t3.exon2 1640497 1641630
chr_3 g194 g194.t3 cds g194.t3.CDS1 1640693 1641630
chr_3 g194 g194.t3 exon g194.t3.exon3 1641941 1641991
chr_3 g194 g194.t3 cds g194.t3.CDS2 1641941 1641989
chr_3 g194 g194.t3 TTS g194.t3 1642202 1642202

Sequences

>g194.t3 Gene=g194 Length=1399
ATGTTGTTTTGTCCGTGTGCTTTGTTAAATCTCGTATATATAGGAATTTTCATCGGAAGT
TTACTGATTTTCGCATTAATTTTCCTCGTCATCATATTAAAACAAATTATCAGTAAAGAG
AAAAATAAAAGACTTGCAACATCATCACAGCAATGTATTGGCATTTTTCATCCATATTGT
AATGCTGGTGGAGGAGGCGAAAGAGTTTTATGGTATATGAAGGAACTCGATTCATATTGT
ACACAGGCGATAAAGAAGCGTCACCCAAACAAATTTTATCAAAATGCCGTAACAATTTTA
ATATCGAAATTGATGCTAATCGATTAGAATTTATCTTTTTAAACCAAAGAAAATGGGTTG
AAGCAGAAAAATATCCCTTTTTCACTCTTCTTGGTCAAAGTTTAGGATCGATGATTTTAG
GCTTTGAAGCATTACTTAAGTTTCAACCTGATATTTATATTGATACAATGGGTTATGCAT
TTACGTATCCTATTTTTAAATACATTGGTAAAGCTCGTGTTTCTTCATATACACACTATC
CGACAATAAGTACTGACATGTTAAGACGAGTGGCAAATAGAACGTTAACTTATAATAATC
GAAGTCATGTAGCAAGAAATCCATTCCTCACATGGGCAAAACTTTCATATTATCGTCTCT
TTGCATCATTCTATGGTATTGTTGGACGATGCGCAGAAACAGTCATGGTAAATTCTTCAT
GGACTGAAAATCACATCAATTCTATATGGAATATACCACTTAAAACGCATCGCGTTTATC
CACCATGTGAAGTATCTCATTTGAAAGAGATTCAACATGTACCAAGTAGTGATGGAAACA
TTTATATTCTGTCAGTTGGACAATATCGGCCTGAAAAAGATCATCCTTTGATTCTCCAAA
GCCTCTACGAACTGAGAACTTTGCTTGAGCGTGATGAAGAGCTATGGGAAAGAATTCGTT
TAATTTTTGTCGGCTCATGTCGTAATGATGAGGATCTCGAACGTGTTCAGAATTTGCGAG
ATTTCAGTCGACACTTGGCATTAGATGAACATGTTGAATTCAAAGTGAATGCCTCTTATC
AAGAATTGATTCAATGTTACCAAAAATCGCTAATTGGTATTCATGCAATGTGGAATGAAC
ATTTCGGCATAAGTGTTGTTGAACTAATGGCTGCTGGTCTTATCATGATTGCGAATAGAT
CGGGTGGACCGAGAATGGATATAATTGAAACATCAGAAGGTAGTCAAACTGGTTACCTTG
CCGATAGCGCTGAAGACTATGCTCGCTGTCTAGAAACAATTTTATACAACAGCAGAGAGC
AAAATGATAAAATTAGAAATGCTGCAAGGTGGAATTTGAAAAGAATTTTCTACGAGTCGT
CGGTCCGATGTTTGACTAA

>g194.t3 Gene=g194 Length=329
MILGFEALLKFQPDIYIDTMGYAFTYPIFKYIGKARVSSYTHYPTISTDMLRRVANRTLT
YNNRSHVARNPFLTWAKLSYYRLFASFYGIVGRCAETVMVNSSWTENHINSIWNIPLKTH
RVYPPCEVSHLKEIQHVPSSDGNIYILSVGQYRPEKDHPLILQSLYELRTLLERDEELWE
RIRLIFVGSCRNDEDLERVQNLRDFSRHLALDEHVEFKVNASYQELIQCYQKSLIGIHAM
WNEHFGISVVELMAAGLIMIANRSGGPRMDIIETSEGSQTGYLADSAEDYARCLETILYN
SREQNDKIRNAARWNLKRIFYESSVRCLT

Protein features from InterProScan

Transcript Database ID Name Start End E.value
5 g194.t3 Gene3D G3DSA:3.40.50.2000 Glycogen Phosphorylase B; 126 320 0
3 g194.t3 PANTHER PTHR45919 GDP-MAN:MAN(3)GLCNAC(2)-PP-DOL ALPHA-1,2-MANNOSYLTRANSFERASE 1 319 0
2 g194.t3 Pfam PF15924 ALG11 mannosyltransferase N-terminus 1 113 0
1 g194.t3 Pfam PF00534 Glycosyl transferases group 1 135 313 0
4 g194.t3 SUPERFAMILY SSF53756 UDP-Glycosyltransferase/glycogen phosphorylase 6 316 0

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0004377 GDP-Man:Man3GlcNAc2-PP-Dol alpha-1,2-mannosyltransferase activity MF
GO:0016757 glycosyltransferase activity MF

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed