Gene loci information

Transcript annotation

  • This transcript has been annotated as Apyrase.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_3 g2835 g2835.t6 TTS g2835.t6 20500351 20500351
chr_3 g2835 g2835.t6 isoform g2835.t6 20500421 20501636
chr_3 g2835 g2835.t6 exon g2835.t6.exon1 20500421 20501313
chr_3 g2835 g2835.t6 cds g2835.t6.CDS1 20500421 20501313
chr_3 g2835 g2835.t6 exon g2835.t6.exon2 20501379 20501636
chr_3 g2835 g2835.t6 cds g2835.t6.CDS2 20501379 20501445
chr_3 g2835 g2835.t6 TSS g2835.t6 20502370 20502370

Sequences

>g2835.t6 Gene=g2835 Length=1151
AACGAGCAGGTAGAAAGATTGGTTTAATTGGAGCACTTGTGGTTGCAACTTTGGAAATTT
CGAGTCCAGGAAATTTAAAAATTCTAGATGAAATTGAATCTGTCAAACAGGAAGCAGCAA
GATTAAAAAGAGAAGATGACGTTGATATTATTATTGTTTTGTCACATTGTGGCCTTGTAA
TTGATCGTGAAATGGCACAAAGTGGTGATGAAATAGATATTATTGTAGGTGGACATAGTC
ATTCTCTTCTTTATACAGGTGATAATGTTCCCGGACCAGATGTTCCCGCAGATAAATATC
CAATTGAATACAAACATGAAAGCGGACATAAAACAATTATCGTACAAGCTTCAGCTTATA
CAAAATATCTCGGTGATTTAACAGTTTATTTTGATGAGAACGGAGAAATTGAGACATATG
AAGGAAATACAATTTTCTTAGAAACAAGCATTGAACCTGATCCTGAAATTGTTGAACAAT
TAGCACCATGGAAAGCTGCAGTCGATGCAATTGGACAAAGAAAAGTCGGTGATATCAAAT
CGATGCTGTATCAAAAAGATTGCGCTTTCGGAGAATGTAATATTGGCGATTTTGTGTGTG
ATGCTTTTATTAATTACATCGTGACACATGAAGATTATCAAGTTAATGATGGATGGGCAT
ATGCAGCTATTGCAATTATTAATGCTGGTAGTATTCGCAATAATTTACCACCAGGTGAAT
TAATCTTTGATGATCTTTTCACTACAATTCCATTTATCAACACACTCGATGTTTTTGAGT
TGCTTGGTCAAGACTTGTTGGATGCACTTCAATTCTCTGGTAATGCTTATAGATATTACA
ACTTTTTGCAATTTTCTGGATTAAAAGTAACATACAACATTTCAATGCCAATGAATCAGC
GAGTTATTTCAGTAGATGTTTTATGTCGAGAATGTGAAATTCCAAAATATGAGAAATTGG
ATGTAACAAAATATTATCGTTTAATTATTTCAAGTTTTTTCGGTGATGGTGGAAATGGAT
ATTTGATGTTTAAAAACAAAAGAAATACCCGCACAACTAAAGAAAAAGATATTGAAATTA
TAGAGCAATATTTCAAAAAGATGAGTCCCGTATTGCAGAAAAAGGATGGAAGAATAAAAG
TTTTAACTTGA

>g2835.t6 Gene=g2835 Length=319
MAQSGDEIDIIVGGHSHSLLYTGDNVPGPDVPADKYPIEYKHESGHKTIIVQASAYTKYL
GDLTVYFDENGEIETYEGNTIFLETSIEPDPEIVEQLAPWKAAVDAIGQRKVGDIKSMLY
QKDCAFGECNIGDFVCDAFINYIVTHEDYQVNDGWAYAAIAIINAGSIRNNLPPGELIFD
DLFTTIPFINTLDVFELLGQDLLDALQFSGNAYRYYNFLQFSGLKVTYNISMPMNQRVIS
VDVLCRECEIPKYEKLDVTKYYRLIISSFFGDGGNGYLMFKNKRNTRTTKEKDIEIIEQY
FKKMSPVLQKKDGRIKVLT

Protein features from InterProScan

Transcript Database ID Name Start End E.value
10 g2835.t6 Gene3D G3DSA:3.60.21.10 - 1 108 0
11 g2835.t6 Gene3D G3DSA:3.90.780.10 - 113 318 0
2 g2835.t6 PANTHER PTHR11575 5’-NUCLEOTIDASE-RELATED 3 317 0
3 g2835.t6 PANTHER PTHR11575:SF32 APYRASE-LIKE PROTEIN 3 317 0
6 g2835.t6 PRINTS PR01607 Apyrase family signature 1 24 0
7 g2835.t6 PRINTS PR01607 Apyrase family signature 48 68 0
5 g2835.t6 PRINTS PR01607 Apyrase family signature 176 199 0
4 g2835.t6 PRINTS PR01607 Apyrase family signature 255 274 0
1 g2835.t6 Pfam PF02872 5’-nucleotidase, C-terminal domain 112 281 0
9 g2835.t6 SUPERFAMILY SSF56300 Metallo-dependent phosphatases 2 105 0
8 g2835.t6 SUPERFAMILY SSF55816 5’-nucleotidase (syn. UDP-sugar hydrolase), C-terminal domain 110 318 0

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0016787 hydrolase activity MF
GO:0009166 nucleotide catabolic process BP

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.

Raw TPM values