Gene loci information

Isoforms of this gene

  • There are 8 isoforms that are expressed from this gene.
  • The longest transcript is g2835.t1
  • List of isoforms

g2835.t1, g2835.t2, g2835.t3, g2835.t4, g2835.t5, g2835.t6, g2835.t7, g2835.t8

The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively.

KEGG

Pathway

  • This gene belongs to the following 1 pathways
ko00230
ko00240
ko01100

Gene conservation patterns

Diptera wide analysis

The Orthogroup for the longest transcript (g2835.t1) is OG0000213. Other genes in this orthogroup contains the following. This list is ordered by phylogeny determined by OrthoFinder analysis. Genes from ENSEMBL are linked to their corresponding pages. For P. nubifer and P. vanderplanki, they are linked to the Midgebase1 and Midgebase2 pages.

Conservation

Organism Abb. ID No. Orthologs Ortholog ID
Atta cephalotes ACEPH 1 XP_012060604.1
Apis mellifera AMELL 1 GB52756-PA
Culicoides sonorensis CSONO 7 CSON007700-1, CSON007626-1, CSON000238-1, CSON003271-1, CSON000229-1, CSON003272-2, CSON000233-1
Polypedilum nubifer PNUBI 5 Pn.10306, Pn.14415, Pn.01277, Pn.01276, Pn.14411
Polypedilum vanderplanki PVAND 7 g348.t1, g2835.t1, g350.t1, g6226.t1, g346.t1, g345.t1, g2831.t1
Polypedilum pembai PPEMB 4 g11203.t1, g6388.t1, g11208.t1, g10721.t1
Belgica antarctica BANTA 4 IU25_11173-mRNA-1, IU25_09706-mRNA-1, IU25_03922-mRNA-1, IU25_11493-mRNA-1
Clunio marinus CMARI 3 CRL07285.1, CRK87057.1, CRK89351.1
Aedes aegypti lvpagwg AAEGYL 4 AAEL011346-PA, AAEL009968-PB, AAEL000575-PA, AAEL011348-PB
Culex quinquefasciatus quinquefasciatus CQUINQ 3 EDS28861.1, EDS27505.1, EDS27504.1
Culex quinquefasciatus CQUIN 3 CPIJ018314-PA, CPIJ018313-PA, CPIJ007316-PA
Anopheles atroparvus AATRO 5 AATE006178-PA, AATE005295-PA, AATE009237-PA, AATE004883-PA, AATE021077-PA
Anopheles sinensis china ASINEC 5 ASIC008758-PA, ASIC016659-PA, ASIC008769-PA, ASIC016658-PA, ASIC012419-PA
Anopheles dirus ADIRU 4 ADIR008786-PA, ADIR008020-PA, ADIR010497-PA, ADIR010498-PA
Anopheles farauti AFARA 5 AFAF008693-PA, AFAF016548-PA, AFAF002148-PA, AFAF020689-PA, AFAF004669-PA
Anopheles epiroticus AEPIR 4 AEPI006113-PA, AEPI008425-PA, AEPI006112-PA, AEPI004737-PA
Anopheles christyi ACHRI 3 ACHR005645-PA, ACHR005644-PA, ACHR000291-PA
Anopheles merus AMERU 6 AMEM012813-PA, AMEM011843-PA, AMEM012458-PA, AMEM011390-PA, AMEM011361-PA, AMEM006985-PA
Anopheles melas AMELA 4 AMEC011953-PA, AMEC006460-PA, AMEC005346-PA, AMEC003665-PA
Anopheles arabiensis AARAB 5 AARA017341-PA, AARA017340-PA, AARA002343-PA, AARA002044-PA, AARA002043-PA
Anopheles coluzzii ACOLU 6 ACOM042538-PA, ACOM039133-PA, ACOM039141-PA, ACOM042537-PA, ACOM034357-PA, ACOM034354-PA
Anopheles coluzzii ngousso ACOLUN 6 ACON005458-PA, ACON007139-PA, ACON005457-PA, ACON007140-PA, ACON001601-PA, ACON001600-PA
Anopheles gambiae AGAMB 6 AGAP005458-PA, AGAP001600-PA, AGAP007139-PA, AGAP007140-PA, AGAP005457-PA, AGAP001601-PA
Anopheles quadriannulatus AQUAD 3 AQUA002070-PA, AQUA000466-PA, AQUA000467-PA
Anopheles minimus AMINI 4 AMIN010791-PA, AMIN003411-PA, AMIN003410-PA, AMIN011281-PA
Anopheles culicifacies ACULI 4 ACUA011791-PA, ACUA024891-PA, ACUA018037-PA, ACUA012622-PA
Anopheles funestus AFUNE 5 AFUN008441-PA, AFUN021441-PA, AFUN001632-PA, AFUN001633-PA, AFUN021440-PA
Anopheles stephensi indian ASTEPI 5 ASTEI05501-PA, ASTEI02078-PA, ASTEI09063-PA, ASTEI09062-PA, ASTEI05502-PA
Anopheles stephensi ASTEP 4 ASTE006240-PA, ASTE011471-PA, ASTE011472-PA, ASTE010724-PA
Anopheles albimanus AALBI 3 AALB006077-PA, AALB003406-PA, AALB003405-PA
Anopheles darlingi ADARL 5 ADAC001176-PA, ADAC010308-PA, ADAC001175-PA, ADAC010439-PA, ADAC010438-PA
Drosophila willistoni DWILL 1 FBpp0375177
Drosophila pseudoobscura DPSEU 1 FBpp0335126
Drosophila persimilis DPERS 2 FBpp0182367, FBpp0182366
Drosophila ananassae DANAN 1 FBpp0123485
Drosophila melanogaster DMELA 1 FBpp0288788
Drosophila sechellia DSECH 2 FBpp0192932, FBpp0192933
Drosophila simulans DSIMU 1 FBpp0312806
Drosophila erecta DEREC 1 FBpp0371905
Drosophila yakuba DYAKU 1 FBpp0352496
Drosophila virilis DVIRI 2 FBpp0230055, FBpp0230056
Drosophila mojavensis DMOJA 1 FBpp0380306
Drosophila grimshawi DGRIM 1 FBpp0407944
Lucilia cuprina LCUPR 0 none
Musca domestica MDOME 2 MDOA013872-PE, MDOA014972-PA
Stomoxys calcitrans SCALC 5 SCAU010812-PA, SCAU008983-PA, SCAU006447-PA, SCAU006002-PA, SCAU000392-PA
Glossina brevipalpis GBREV 2 GBRI038360-PA, GBRI038363-PA
Glossina palpalis GPALP 3 GPPI007381-PA, GPPI007382-PA, GPPI007383-PA
Glossina austeni GAUST 3 GAUT016355-PA, GAUT016338-PA, GAUT016335-PA
Glossina pallidipes GPALL 3 GPAI018619-PA, GPAI018626-PA, GPAI018620-PA
Glossina morsitans GMORS 3 GMOY012313-PA, GMOY003214-PA, GMOY012312-PA

Gene tree

Chironomidae-wide analysis

The Orthogroup for the longest transcript (g2835.t1) is OG0000286. Other genes in this orthogroup contains the following. [This data uses ab initio gene models predicted in Yoshida et al 2022, so most genes are not registered in public databases. Please contact the authors for more information on these data.]

Conservation

Organism Abb. ID Ortholog ID
Podonomus sp PODON TRINITY_DN4476_c0_g1_i20.p1, TRINITY_DN2050_c0_g1_i13.p1
Parochlus steinenii PSTEI PSG01690, PSG11245, PSG01705
Trissopelopia nemorum TNEMO TRINITY_DN3057_c0_g2_i1.p1, TRINITY_DN15722_c0_g2_i1.p1, TRINITY_DN14173_c0_g1_i1.p1, TRINITY_DN1533_c0_g1_i7.p1, TRINITY_DN3057_c0_g1_i7.p1, TRINITY_DN3057_c0_g3_i1.p1, TRINITY_DN10512_c0_g1_i2.p1, TRINITY_DN2635_c0_g1_i6.p1
Paraheptagyia tonnoiri PTONN TRINITY_DN27876_c0_g1_i1.p1, TRINITY_DN3695_c0_g1_i7.p1, TRINITY_DN12767_c0_g1_i1.p1, TRINITY_DN704_c0_g1_i5.p1
Telmatogeton pecinata TPECI TRINITY_DN3020_c0_g1_i1.p1, TRINITY_DN3020_c0_g5_i1.p1, TRINITY_DN3020_c0_g10_i1.p1, TRINITY_DN515_c0_g1_i3.p1, TRINITY_DN3020_c0_g9_i1.p1
Cricotopus draysoni CDRAY TRINITY_DN2959_c0_g1_i1.p1, TRINITY_DN22625_c0_g1_i2.p1, TRINITY_DN84395_c0_g1_i1.p1, TRINITY_DN56391_c0_g1_i1.p1, TRINITY_DN2626_c0_g1_i10.p1, TRINITY_DN1418_c0_g1_i2.p1
Clunio marinus CMARI CRL07277.1, CRK87057.1, CRK89351.1
Cardiocladius sp CARDI TRINITY_DN18767_c0_g1_i1.p1, TRINITY_DN7011_c0_g1_i3.p1, TRINITY_DN64081_c0_g1_i1.p1, TRINITY_DN60952_c0_g1_i1.p1
Belgica antarctica BANTA IU25_09706-mRNA-1, IU25_11494-mRNA-1, IU25_03922-mRNA-1
Kiefferophyes invenustulus KINVE TRINITY_DN26563_c0_g1_i1.p1, TRINITY_DN217841_c0_g1_i1.p2, TRINITY_DN40049_c0_g1_i1.p1, TRINITY_DN224700_c0_g1_i1.p1, TRINITY_DN64115_c0_g1_i1.p1, TRINITY_DN5510_c0_g1_i5.p1, TRINITY_DN4333_c0_g1_i17.p1, TRINITY_DN197032_c0_g1_i1.p1, TRINITY_DN254548_c0_g1_i1.p1, TRINITY_DN206131_c0_g1_i1.p2, TRINITY_DN8907_c0_g1_i2.p1
Chironomus riparius CRIPA g15271.t1, g11611.t1, g12279.t1, g9889.t1, g7225.t1, g2164.t1
Chironomus columbiensis CCOLU TRINITY_DN3562_c0_g1_i1.p1, TRINITY_DN6505_c0_g1_i1.p1, TRINITY_DN3323_c0_g1_i3.p1, TRINITY_DN73271_c0_g1_i1.p1
Chironomus tentans CTENT g4660.t1, g10400.t1, g4662.t1, g5077.t1, g13772.t1, g14480.t1
Chironomus dilutus CDILU TRINITY_DN8680_c0_g1_i1.p1, TRINITY_DN2924_c0_g1_i2.p1, TRINITY_DN4883_c0_g1_i1.p1, TRINITY_DN26_c1_g1_i1.p1, TRINITY_DN8863_c0_g1_i1.p1
Polypedilum nubifer PNUBI Pn.10306, Pn.14415, Pn.01277
Polypedilum vanderplanki PVAND g2835.t1, g350.t1, g6226.t1, g349.t1, g346.t1, g345.t1, g347.t1
Polypedilum pembai PPEMB g11203.t1, g6388.t1, g10721.t1
Culicoides sonorensis CSONO CSON007700-1, CSON007626-1, CSON000238-1, CSON003271-1, CSON000229-1, CSON003272-2, CSON000233-1
Aedes aegypti lvpagwg AAEGYL AAEL011346-PA, AAEL009968-PB, AAEL000575-PA, AAEL011348-PB
Anopheles gambiae AGAMB AGAP001600-PA, AGAP007140-PA, AGAP001601-PA

Gene tree

Expression profile for this gene

Gene-level expression profile

Raw TPM values

Expression profile of isoforms

A heatmap representing isoforms with TPM > 0 in at least one sample. Expression profiles were are clustered based on the spearman correlation