General information for g3418.t11
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Putative Glutathione S-transferase 1, isoform D.
Parent gene
- The parent gene g3418 is located on chr_3: 25264179..25266972 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_3 | g3418 | g3418.t11 | isoform | g3418.t11 | 25262900 | 25264673 |
| chr_3 | g3418 | g3418.t11 | exon | g3418.t11.exon1 | 25262900 | 25262986 |
| chr_3 | g3418 | g3418.t11 | exon | g3418.t11.exon2 | 25263105 | 25263176 |
| chr_3 | g3418 | g3418.t11 | exon | g3418.t11.exon3 | 25263334 | 25263434 |
| chr_3 | g3418 | g3418.t11 | exon | g3418.t11.exon4 | 25264185 | 25264673 |
| chr_3 | g3418 | g3418.t11 | cds | g3418.t11.CDS1 | 25264347 | 25264673 |
| chr_3 | g3418 | g3418.t11 | TTS | g3418.t11 | 25264797 | 25264797 |
| chr_3 | g3418 | g3418.t11 | TSS | g3418.t11 | NA | NA |
Sequences
>g3418.t11 Gene=g3418 Length=749
AGTATTTAGTATGTTGCTCTCGCATGTTGGTCGCTCAGTTTGTTGAATTCAACCGTCTTG
TTCGGAGGCTTTCCAAGCAATTCAAAGTATTACTTTAGTGTCTAAATAATCACTTTTCAA
ATCAAGATCAAAAATGGATTTCTACTATATGCCAGGTTAAGCCGTTCAAATGACAGCTGC
AGCTGTAGGTGCTGAATTAAACCTTAAGTTCCTCAATTTGATGGCCGGCGAACACATGAA
ACCAGATTTTTTAGCAGTAAATCAATCCTCAACACACTATTCCAACTTTGGTTGACAATG
GATTTGGTCTTTGGGAATCACGTGCTATTTGCACATATTTGATCGAGAAATACGGAAAGG
AAAGTCTTTTCCCAAAAGATCCAAAGACTCGTGCAATTATAAATCAACGTTTATACTTTG
ATATGGGCACGCTCTATCAAAAATTTGCCGACTACTACTATCCACAATTGTTTGCTAAGG
CACCAGCAGATCCAGAAAAATTCAAAGCAATGGAAACTGCCATGGGATTTTTCAATACAT
TTTTGGAAGGAAATAAATATGCTGCCGGAAATGATCTTACTGTTGCAGACATTTGTTTGG
TTGCAACCATTTCCACTTATGATGCTGCCGGTTTCGATTTGAGCAAATTCCCAAATGTTG
CAAAATGGTTCGAATTGTGCAAAAAAACTGTTCCTGGCTATGCAATCAATCAGGCTGGTG
TTGATGAATTCAAGAAATTCTTCAATTAA
>g3418.t11 Gene=g3418 Length=108
MGTLYQKFADYYYPQLFAKAPADPEKFKAMETAMGFFNTFLEGNKYAAGNDLTVADICLV
ATISTYDAAGFDLSKFPNVAKWFELCKKTVPGYAINQAGVDEFKKFFN
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 7 | g3418.t11 | CDD | cd03177 | GST_C_Delta_Epsilon | 1 | 104 | 0.000 |
| 5 | g3418.t11 | Gene3D | G3DSA:1.20.1050.10 | - | 1 | 108 | 0.000 |
| 2 | g3418.t11 | PANTHER | PTHR43969:SF9 | GLUTATHIONE S TRANSFERASE D10, ISOFORM A-RELATED | 1 | 107 | 0.000 |
| 3 | g3418.t11 | PANTHER | PTHR43969 | GLUTATHIONE S TRANSFERASE D10, ISOFORM A-RELATED | 1 | 107 | 0.000 |
| 1 | g3418.t11 | Pfam | PF00043 | Glutathione S-transferase, C-terminal domain | 18 | 84 | 0.000 |
| 6 | g3418.t11 | ProSiteProfiles | PS50405 | Soluble glutathione S-transferase C-terminal domain profile. | 1 | 107 | 19.486 |
| 4 | g3418.t11 | SUPERFAMILY | SSF47616 | GST C-terminal domain-like | 1 | 93 | 0.000 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed