Gene loci information

Isoforms of this gene

  • There are 47 isoforms that are expressed from this gene.
  • The longest transcript is g3418.t1
  • List of isoforms

g3418.t1, g3418.t2, g3418.t3, g3418.t4, g3418.t5, g3418.t6, g3418.t7, g3418.t8, g3418.t9, g3418.t10, g3418.t11, g3418.t12, g3418.t13, g3418.t14, g3418.t15, g3418.t16, g3418.t17, g3418.t18, g3418.t19, g3418.t20, g3418.t21, g3418.t22, g3418.t23, g3418.t24, g3418.t25, g3418.t26, g3418.t27, g3418.t28, g3418.t29, g3418.t30, g3418.t31, g3418.t32, g3418.t33, g3418.t34, g3418.t35, g3418.t36, g3418.t37, g3418.t38, g3418.t39, g3418.t41, g3418.t42, g3418.t43, g3418.t44, g3418.t45, g3418.t46, g3418.t47, g3418.t48

The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively.

KEGG

Orthology

Pathway

  • This gene belongs to the following 1 pathways
ko00480
ko00980
ko00982
ko00983
ko01100
ko01524
ko04212
ko05200
ko05204
ko05207
ko05208
ko05225
ko05418

This gene has too many mapped pathways (>3). Please look at the original KEGG entry above for pathway visualization.

Gene conservation patterns

Diptera wide analysis

The Orthogroup for the longest transcript (g3418.t1) is OG0000025. Other genes in this orthogroup contains the following. This list is ordered by phylogeny determined by OrthoFinder analysis. Genes from ENSEMBL are linked to their corresponding pages. For P. nubifer and P. vanderplanki, they are linked to the Midgebase1 and Midgebase2 pages.

Conservation

Organism Abb. ID No. Orthologs Ortholog ID
Atta cephalotes ACEPH 4 XP_012061926.1, XP_012056448.1, XP_012056604.1, XP_012061889.1
Apis mellifera AMELL 2 GB50265-PA, GB50266-PA
Culicoides sonorensis CSONO 20 CSON014933-1, CSON005724-1, CSON001667-1, CSON010979-1, CSON005723-1, CSON005725-1, CSON011559-1, CSON002661-1, CSON005721-1, CSON007063-1, CSON010980-1, CSON003670-1, CSON010977-1, CSON001574-1, CSON002662-1, CSON010982-1, CSON005722-1, CSON002782-1, CSON010973-1, CSON005581-1
Polypedilum nubifer PNUBI 10 Pn.12183, Pn.13743, Pn.13207, Pn.00891, Pn.07637, Pn.07661, Pn.15956, Pn.06914, Pn.12182, Pn.07636
Polypedilum vanderplanki PVAND 13 g9134.t1, g1720.t1, g6244.t1, g3417.t1, g6245.t1, g4745.t1, g4743.t1, g5858.t1, g3543.t4, g3540.t1, g3541.t1, g5501.t1, g3418.t1
Polypedilum pembai PPEMB 13 g3935.t1, g7447.t1, g7446.t1, g3198.t1, g10734.t1, g3479.t1, g13806.t1, g3478.t1, g3936.t1, g11270.t1, g3200.t1, g3934.t1, g3197.t1
Belgica antarctica BANTA 11 IU25_09538-mRNA-1, IU25_12888-mRNA-1, IU25_00733-mRNA-1, IU25_03280-mRNA-1, IU25_02672-mRNA-1, IU25_11196-mRNA-1, IU25_00732-mRNA-1, IU25_09978-mRNA-1, IU25_06817-mRNA-1, IU25_02671-mRNA-1, IU25_13337-mRNA-1
Clunio marinus CMARI 10 CRL07086.1, CRL01066.1, CRK97493.1, CRL07089.1, CRL07094.1, CRL07092.1, CRL00424.1, CRL07087.1, CRL07090.1, CRK97501.1
Aedes aegypti lvpagwg AAEGYL 8 AAEL001059-PA, AAEL001071-PA, AAEL001054-PB, AAEL010500-PA, AAEL010582-PA, AAEL001061-PA, AAEL001090-PA, AAEL026530-PA
Culex quinquefasciatus quinquefasciatus CQUINQ 12 EDS36604.1, EDS34950.1, EDS41105.1, EDS36598.1, EDS36586.1, EDS36583.1, EDS36584.1, EDS36597.1, EDS36602.1, EDS36605.1, EDS36603.1, EDS36601.1
Culex quinquefasciatus CQUIN 12 CPIJ002663-PA, CPIJ010814-PA, CPIJ002679-PA, CPIJ002661-PA, CPIJ002674-PA, CPIJ002678-PA, CPIJ002681-PA, CPIJ002660-PA, CPIJ002675-PA, CPIJ002682-PA, CPIJ002680-PA, CPIJ014694-PA
Anopheles atroparvus AATRO 11 AATE005639-PA, AATE019743-PA, AATE013600-PA, AATE001370-PA, AATE014321-PA, AATE007401-PA, AATE015577-PA, AATE010905-PA, AATE005828-PA, AATE010377-PA, AATE004497-PA
Anopheles sinensis china ASINEC 12 ASIC021773-PA, ASIC021755-PA, ASIC021751-PA, ASIC021752-PA, ASIC021746-PA, ASIC006736-PA, ASIC021774-PA, ASIC021748-PA, ASIC021753-PA, ASIC021769-PA, ASIC021749-PA, ASIC021770-PA
Anopheles dirus ADIRU 3 ADIR006123-PA, ADIR005440-PA, ADIR003004-PA
Anopheles farauti AFARA 11 AFAF007182-PA, AFAF008491-PA, AFAF004869-PA, AFAF018131-PA, AFAF009572-PA, AFAF002199-PA, AFAF009116-PA, AFAF001232-PA, AFAF000220-PA, AFAF002998-PA, AFAF003060-PA
Anopheles epiroticus AEPIR 12 AEPI015091-PA, AEPI015134-PA, AEPI015111-PD, AEPI015092-PA, AEPI002405-PA, AEPI002620-PA, AEPI015112-PA, AEPI015095-PA, AEPI002630-PA, AEPI015051-PA, AEPI015093-PA, AEPI015094-PA
Anopheles christyi ACHRI 6 ACHR002762-PA, ACHR002761-PA, ACHR001931-PA, ACHR001930-PA, ACHR001765-PA, ACHR002079-PA
Anopheles merus AMERU 12 AMEM018201-PA, AMEM008574-PA, AMEM008441-PA, AMEM005139-PA, AMEM017721-PA, AMEM011337-PA, AMEM015636-PA, AMEM007476-PA, AMEM016928-PA, AMEM018991-PC, AMEM018990-PA, AMEM006601-PA
Anopheles melas AMELA 8 AMEC015474-PA, AMEC013711-PA, AMEC002179-PA, AMEC021724-PA, AMEC019707-PA, AMEC011226-PA, AMEC008068-PA, AMEC002447-PA
Anopheles arabiensis AARAB 11 AARA015764-PA, AARA015748-PA, AARA015763-PA, AARA015840-PB, AARA009622-PA, AARA015765-PA, AARA015762-PA, AARA000260-PA, AARA009632-PA, AARA015841-PA, AARA015665-PA
Anopheles coluzzii ACOLU 11 ACOM029740-PA, ACOM033215-PA, ACOM029746-PA, ACOM033231-PA, ACOM033214-PA, ACOM029751-PA, ACOM029745-PA, ACOM033228-PA, ACOM032869-PA, ACOM033224-PA, ACOM029739-PA
Anopheles coluzzii ngousso ACOLUN 13 ACON012702-PA, ACON004163-PA, ACON004378-PA, ACON004173-PA, ACON004171-PA, ACON004381-PA, ACON009342-PA, ACON004380-PA, ACON004383-PA, ACON012838-PA, ACON004382-PA, ACON004165-PA, ACON004164-PB
Anopheles gambiae AGAMB 13 AGAP004380-PA, AGAP004164-PC, AGAP004165-PA, AGAP012702-PA, AGAP004173-PA, AGAP009342-PA, AGAP004381-PA, AGAP004163-PB, AGAP004171-PA, AGAP004378-PA, AGAP004382-PA, AGAP012838-PA, AGAP004383-PA
Anopheles quadriannulatus AQUAD 11 AQUA016041-PA, AQUA015972-PA, AQUA016040-PA, AQUA015867-PA, AQUA015999-PA, AQUA003338-PA, AQUA009869-PD, AQUA009877-PA, AQUA015920-PA, AQUA015971-PA, AQUA009868-PA
Anopheles minimus AMINI 6 AMIN001771-PA, AMIN004770-PA, AMIN004190-PA, AMIN004191-PA, AMIN004771-PA, AMIN004180-PA
Anopheles culicifacies ACULI 9 ACUA003655-PA, ACUA022094-PA, ACUA006537-PA, ACUA025128-PA, ACUA014512-PA, ACUA009797-PA, ACUA015755-PA, ACUA017830-PA, ACUA018271-PA
Anopheles funestus AFUNE 11 AFUN015842-PA, AFUN011420-PA, AFUN015840-PA, AFUN015768-PA, AFUN015834-PA, AFUN016010-PA, AFUN015839-PA, AFUN011410-PA, AFUN015767-PA, AFUN015841-PA, AFUN003303-PA
Anopheles stephensi indian ASTEPI 6 ASTEI11439-PA, ASTEI07627-PA, ASTEI08703-PA, ASTEI07618-PA, ASTEI08702-PA, ASTEI07617-PA
Anopheles stephensi ASTEP 10 ASTE015937-PA, ASTE015883-PA, ASTE015977-PA, ASTE004119-PA, ASTE004109-PA, ASTE015936-PA, ASTE015938-PA, ASTE016000-PD, ASTE007589-PA, ASTE015999-PA
Anopheles albimanus AALBI 10 AALB015683-PA, AALB015607-PA, AALB001952-PA, AALB015600-PA, AALB015722-PA, AALB002086-PA, AALB015675-PA, AALB015601-PA, AALB015682-PA, AALB015606-PC
Anopheles darlingi ADARL 11 ADAC007467-PA, ADAC000834-PA, ADAC000833-PA, ADAC000835-PA, ADAC000802-PA, ADAC007981-PA, ADAC008796-PA, ADAC000804-PA, ADAC000803-PA, ADAC004770-PA, ADAC008798-PA
Drosophila willistoni DWILL 11 FBpp0241014, FBpp0240349, FBpp0241022, FBpp0240348, FBpp0240347, FBpp0241021, FBpp0243169, FBpp0241016, FBpp0240345, FBpp0241018, FBpp0241019
Drosophila pseudoobscura DPSEU 7 FBpp0282631, FBpp0283395, FBpp0283397, FBpp0283393, FBpp0283392, FBpp0334477, FBpp0282633
Drosophila persimilis DPERS 8 FBpp0191411, FBpp0191291, FBpp0191407, FBpp0191408, FBpp0191409, FBpp0191410, FBpp0191293, FBpp0191292
Drosophila ananassae DANAN 8 FBpp0121139, FBpp0121140, FBpp0342761, FBpp0121133, FBpp0350089, FBpp0121137, FBpp0344769, FBpp0120244
Drosophila melanogaster DMELA 11 FBpp0082044, FBpp0082077, FBpp0113057, FBpp0082041, FBpp0082047, FBpp0082042, FBpp0082045, FBpp0082079, FBpp0082043, FBpp0082078, FBpp0082046
Drosophila sechellia DSECH 11 FBpp0207498, FBpp0205494, FBpp0205491, FBpp0207496, FBpp0205497, FBpp0205495, FBpp0205496, FBpp0207499, FBpp0205492, FBpp0205498, FBpp0205499
Drosophila simulans DSIMU 8 FBpp0315149, FBpp0318897, FBpp0218981, FBpp0217218, FBpp0319035, FBpp0217223, FBpp0218979, FBpp0217224
Drosophila erecta DEREC 7 FBpp0372544, FBpp0137307, FBpp0135683, FBpp0137363, FBpp0135685, FBpp0135684, FBpp0135681
Drosophila yakuba DYAKU 7 FBpp0271191, FBpp0269537, FBpp0354502, FBpp0269538, FBpp0271190, FBpp0271192, FBpp0269539
Drosophila virilis DVIRI 8 FBpp0237269, FBpp0237272, FBpp0238802, FBpp0237274, FBpp0237271, FBpp0238803, FBpp0228863, FBpp0237273
Drosophila mojavensis DMOJA 6 FBpp0172413, FBpp0172412, FBpp0173596, FBpp0172410, FBpp0172411, FBpp0171571
Drosophila grimshawi DGRIM 8 FBpp0152876, FBpp0416169, FBpp0404306, FBpp0147009, FBpp0154092, FBpp0418731, FBpp0154103, FBpp0147019
Lucilia cuprina LCUPR 3 KNC25051, KNC25052, KNC25048
Musca domestica MDOME 7 MDOA011215-PA, MDOA011453-PA, MDOA012670-PA, MDOA009813-PA, MDOA006158-PB, MDOA015560-PA, MDOA004450-PA
Stomoxys calcitrans SCALC 16 SCAU013271-PA, SCAU006592-PA, SCAU010415-PA, SCAU014717-PA, SCAU011791-PA, SCAU014989-PA, SCAU008450-PA, SCAU008534-PA, SCAU006092-PA, SCAU004223-PA, SCAU008424-PA, SCAU003154-PA, SCAU001128-PA, SCAU010764-PA, SCAU002678-PA, SCAU013637-PA
Glossina brevipalpis GBREV 2 GBRI008723-PA, GBRI008717-PA
Glossina palpalis GPALP 2 GPPI016969-PA, GPPI016964-PA
Glossina austeni GAUST 3 GAUT035968-PA, GAUT035969-PA, GAUT041784-PA
Glossina pallidipes GPALL 2 GPAI029371-PA, GPAI029367-PA
Glossina morsitans GMORS 2 GMOY002002-PA, GMOY002000-PA

Gene tree

Chironomidae-wide analysis

The Orthogroup for the longest transcript (g3418.t1) is OG0000224. Other genes in this orthogroup contains the following. [This data uses ab initio gene models predicted in Yoshida et al 2022, so most genes are not registered in public databases. Please contact the authors for more information on these data.]

Conservation

Organism Abb. ID Ortholog ID
Podonomus sp PODON TRINITY_DN20247_c4_g1_i1.p1, TRINITY_DN44748_c1_g1_i1.p1, TRINITY_DN5338_c1_g3_i1.p2, TRINITY_DN120248_c0_g1_i1.p1, TRINITY_DN17408_c0_g1_i10.p1, TRINITY_DN276_c6_g1_i2.p2, TRINITY_DN44748_c0_g1_i1.p1, TRINITY_DN20247_c0_g1_i2.p2, TRINITY_DN103914_c0_g1_i1.p1, TRINITY_DN20247_c1_g1_i1.p2, TRINITY_DN146854_c0_g1_i1.p1
Parochlus steinenii PSTEI PSG02777, PSG01741, PSG02776
Trissopelopia nemorum TNEMO TRINITY_DN13_c0_g1_i2.p1, TRINITY_DN6571_c0_g1_i1.p1, TRINITY_DN3123_c0_g1_i5.p1, TRINITY_DN1473_c0_g1_i3.p1, TRINITY_DN1874_c0_g1_i3.p1, TRINITY_DN3892_c0_g2_i1.p1, TRINITY_DN16606_c0_g1_i4.p1, TRINITY_DN3892_c0_g1_i2.p1, TRINITY_DN929_c0_g1_i3.p1, TRINITY_DN724_c4_g1_i18.p1, TRINITY_DN1582_c0_g1_i4.p1, TRINITY_DN4718_c0_g1_i3.p1, TRINITY_DN22479_c0_g1_i6.p1, TRINITY_DN5045_c0_g1_i11.p1
Paraheptagyia tonnoiri PTONN TRINITY_DN8384_c0_g1_i2.p1, TRINITY_DN5442_c0_g1_i1.p1, TRINITY_DN2804_c0_g1_i2.p1, TRINITY_DN7071_c0_g1_i1.p1, TRINITY_DN2804_c0_g2_i1.p1
Telmatogeton pecinata TPECI TRINITY_DN0_c398_g1_i1.p1, TRINITY_DN36938_c0_g1_i1.p1, TRINITY_DN5442_c0_g1_i8.p1, TRINITY_DN389_c2_g1_i1.p1
Cricotopus draysoni CDRAY TRINITY_DN88373_c0_g1_i1.p2, TRINITY_DN1559_c0_g1_i1.p1, TRINITY_DN1550_c0_g1_i1.p1, TRINITY_DN75276_c0_g1_i1.p1, TRINITY_DN84838_c0_g1_i1.p1, TRINITY_DN88373_c1_g1_i1.p1, TRINITY_DN740_c0_g1_i1.p1, TRINITY_DN176_c0_g1_i1.p1, TRINITY_DN29365_c0_g1_i1.p1, TRINITY_DN6688_c0_g1_i1.p2
Clunio marinus CMARI CRL07087.1, CRL07089.1
Cardiocladius sp CARDI TRINITY_DN3209_c0_g1_i2.p1, TRINITY_DN12144_c0_g2_i1.p1, TRINITY_DN39699_c0_g1_i1.p1
Belgica antarctica BANTA IU25_02671-mRNA-1, IU25_13337-mRNA-1, IU25_12888-mRNA-1, IU25_02672-mRNA-1
Kiefferophyes invenustulus KINVE TRINITY_DN45526_c0_g1_i1.p1, TRINITY_DN4637_c0_g1_i12.p1, TRINITY_DN39111_c1_g1_i1.p1, TRINITY_DN39111_c0_g2_i4.p1, TRINITY_DN24095_c0_g1_i4.p1, TRINITY_DN34702_c0_g1_i1.p1, TRINITY_DN216624_c0_g1_i1.p1, TRINITY_DN287604_c0_g1_i1.p2, TRINITY_DN9055_c0_g1_i3.p1, TRINITY_DN46523_c0_g1_i1.p1, TRINITY_DN231197_c0_g1_i1.p1, TRINITY_DN52019_c0_g2_i1.p1, TRINITY_DN198416_c0_g1_i1.p1
Chironomus riparius CRIPA g6487.t1, g6488.t1, g4484.t1, g346.t1, g6188.t1
Chironomus columbiensis CCOLU TRINITY_DN4081_c0_g4_i1.p1, TRINITY_DN3708_c0_g1_i1.p1, TRINITY_DN5089_c0_g1_i2.p1, TRINITY_DN4081_c0_g1_i4.p1, TRINITY_DN73360_c0_g1_i1.p1, TRINITY_DN2055_c0_g1_i6.p1
Chironomus tentans CTENT g3643.t1, g7414.t1
Chironomus dilutus CDILU TRINITY_DN5482_c0_g1_i1.p1, TRINITY_DN595_c0_g1_i22.p1, TRINITY_DN2969_c0_g1_i1.p1
Polypedilum nubifer PNUBI Pn.07661, Pn.12182, Pn.06914, Pn.12183
Polypedilum vanderplanki PVAND g1720.t1, g6244.t1, g6245.t1, g3418.t1
Polypedilum pembai PPEMB g7447.t1, g7446.t1, g10734.t1
Culicoides sonorensis CSONO CSON011559-1, CSON007063-1
Aedes aegypti lvpagwg AAEGYL AAEL001061-PA, AAEL010591-PA, AAEL001071-PA, AAEL010582-PA
Anopheles gambiae AGAMB AGAP004378-PA, AGAP004171-PA, AGAP004164-PC, AGAP004165-PA, AGAP004379-PA

Gene tree

Expression profile for this gene

Gene-level expression profile

Raw TPM values

Expression profile of isoforms

A heatmap representing isoforms with TPM > 0 in at least one sample. Expression profiles were are clustered based on the spearman correlation