Gene loci information

Isoforms of this gene

  • There are 15 isoforms that are expressed from this gene.
  • The longest transcript is g4516.t1
  • List of isoforms

g4516.t1, g4516.t3, g4516.t4, g4516.t5, g4516.t6, g4516.t7, g4516.t8, g4516.t9, g4516.t10, g4516.t11, g4516.t12, g4516.t13, g4516.t14, g4516.t15, g4516.t16

The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively.

KEGG

Orthology

Pathway

  • This gene belongs to the following 2 pathways
## Warning in keggs == k_to_ko$V1: longer object length is not a multiple of
## shorter object length
ko00020
ko00270
ko00620
ko00630
ko00680
ko00710
ko00720
ko01100
ko01110
ko01120
ko01200
ko00020
ko00270
ko00620
ko00630
ko00710
ko01100
ko01110
ko01120
ko01200
ko04964

This gene has too many mapped pathways (>3). Please look at the original KEGG entry above for pathway visualization.

Gene conservation patterns

Diptera wide analysis

The Orthogroup for the longest transcript (g4516.t1) is OG0003247. Other genes in this orthogroup contains the following. This list is ordered by phylogeny determined by OrthoFinder analysis. Genes from ENSEMBL are linked to their corresponding pages. For P. nubifer and P. vanderplanki, they are linked to the Midgebase1 and Midgebase2 pages.

Conservation

Organism Abb. ID No. Orthologs Ortholog ID
Atta cephalotes ACEPH 1 XP_012057336.1
Apis mellifera AMELL 3 GB44389-PA, GB48316-PA, GB44039-PA
Culicoides sonorensis CSONO 3 CSON011960-1, CSON010485-1, CSON009907-1
Polypedilum nubifer PNUBI 1 Pn.03008
Polypedilum vanderplanki PVAND 1 g4516.t1
Polypedilum pembai PPEMB 1 g2907.t1
Belgica antarctica BANTA 1 IU25_00215-mRNA-1
Clunio marinus CMARI 2 CRK99232.1, CRL03665.1
Aedes aegypti lvpagwg AAEGYL 1 AAEL007707-PA
Culex quinquefasciatus quinquefasciatus CQUINQ 1 EDS35738.1
Culex quinquefasciatus CQUIN 1 CPIJ002460-PA
Anopheles atroparvus AATRO 1 AATE008501-PA
Anopheles sinensis china ASINEC 1 ASIC007231-PA
Anopheles dirus ADIRU 1 ADIR006019-PA
Anopheles farauti AFARA 1 AFAF000479-PA
Anopheles epiroticus AEPIR 1 AEPI004894-PA
Anopheles christyi ACHRI 0 none
Anopheles merus AMERU 1 AMEM006436-PA
Anopheles melas AMELA 2 AMEC018382-PA, AMEC018000-PA
Anopheles arabiensis AARAB 1 AARA011870-PA
Anopheles coluzzii ACOLU 1 ACOM032411-PA
Anopheles coluzzii ngousso ACOLUN 1 ACON009510-PA
Anopheles gambiae AGAMB 1 AGAP009510-PA
Anopheles quadriannulatus AQUAD 1 AQUA005808-PA
Anopheles minimus AMINI 1 AMIN001882-PA
Anopheles culicifacies ACULI 1 ACUA002776-PA
Anopheles funestus AFUNE 1 AFUN005297-PA
Anopheles stephensi indian ASTEPI 1 ASTEI03832-PA
Anopheles stephensi ASTEP 1 ASTE011383-PA
Anopheles albimanus AALBI 1 AALB000196-PA
Anopheles darlingi ADARL 1 ADAC006053-PA
Drosophila willistoni DWILL 1 FBpp0376682
Drosophila pseudoobscura DPSEU 0 none
Drosophila persimilis DPERS 1 FBpp0183265
Drosophila ananassae DANAN 1 FBpp0117294
Drosophila melanogaster DMELA 1 FBpp0079640
Drosophila sechellia DSECH 1 FBpp0193169
Drosophila simulans DSIMU 1 FBpp0220665
Drosophila erecta DEREC 1 FBpp0142483
Drosophila yakuba DYAKU 1 FBpp0271008
Drosophila virilis DVIRI 1 FBpp0392717
Drosophila mojavensis DMOJA 1 FBpp0383319
Drosophila grimshawi DGRIM 1 FBpp0147263
Lucilia cuprina LCUPR 1 KNC31756
Musca domestica MDOME 1 MDOA014908-PA
Stomoxys calcitrans SCALC 1 SCAU003449-PA
Glossina brevipalpis GBREV 1 GBRI006913-PA
Glossina palpalis GPALP 1 GPPI003392-PA
Glossina austeni GAUST 1 GAUT023469-PA
Glossina pallidipes GPALL 1 GPAI034472-PA
Glossina morsitans GMORS 1 GMOY002786-PA

Gene tree

Chironomidae-wide analysis

The Orthogroup for the longest transcript (g4516.t1) is OG0003341. Other genes in this orthogroup contains the following. [This data uses ab initio gene models predicted in Yoshida et al 2022, so most genes are not registered in public databases. Please contact the authors for more information on these data.]

Conservation

Organism Abb. ID Ortholog ID
Podonomus sp PODON TRINITY_DN2743_c0_g1_i6.p1
Parochlus steinenii PSTEI PSG05685
Trissopelopia nemorum TNEMO TRINITY_DN13602_c0_g1_i1.p1, TRINITY_DN1234_c0_g3_i1.p1
Paraheptagyia tonnoiri PTONN TRINITY_DN245_c0_g3_i2.p1
Telmatogeton pecinata TPECI TRINITY_DN0_c11949_g1_i1.p1
Cricotopus draysoni CDRAY TRINITY_DN94649_c0_g1_i1.p1, TRINITY_DN1122_c0_g1_i4.p1
Clunio marinus CMARI CRK99232.1, CRL03665.1
Cardiocladius sp CARDI TRINITY_DN1169_c0_g1_i1.p1, TRINITY_DN19382_c0_g1_i1.p1
Belgica antarctica BANTA IU25_00215-mRNA-1
Kiefferophyes invenustulus KINVE TRINITY_DN47809_c0_g1_i1.p1, TRINITY_DN328_c0_g3_i1.p1, TRINITY_DN328_c0_g4_i5.p1, TRINITY_DN328_c0_g1_i8.p1
Chironomus riparius CRIPA g2723.t1
Chironomus columbiensis CCOLU TRINITY_DN13477_c0_g2_i1.p1, TRINITY_DN4899_c0_g1_i2.p1, TRINITY_DN13477_c0_g3_i1.p1, TRINITY_DN27376_c0_g1_i1.p1
Chironomus tentans CTENT g2384.t1
Chironomus dilutus CDILU TRINITY_DN727_c0_g2_i3.p1
Polypedilum nubifer PNUBI Pn.03008
Polypedilum vanderplanki PVAND g4516.t1
Polypedilum pembai PPEMB g2907.t1
Culicoides sonorensis CSONO CSON011960-1, CSON010485-1, CSON009907-1
Aedes aegypti lvpagwg AAEGYL AAEL007707-PA
Anopheles gambiae AGAMB AGAP009510-PA

Gene tree

Expression profile for this gene

Gene-level expression profile

Raw TPM values

Expression profile of isoforms

A heatmap representing isoforms with TPM > 0 in at least one sample. Expression profiles were are clustered based on the spearman correlation