General information for g4851.t6
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as hypothetical.
Parent gene
- The parent gene g4851 is located on chr_2: 5413649..5414084 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_2 | g4851 | g4851.t6 | isoform | g4851.t6 | 5413272 | 5414084 |
| chr_2 | g4851 | g4851.t6 | exon | g4851.t6.exon1 | 5413272 | 5413831 |
| chr_2 | g4851 | g4851.t6 | cds | g4851.t6.CDS1 | 5413419 | 5413649 |
| chr_2 | g4851 | g4851.t6 | exon | g4851.t6.exon2 | 5413888 | 5413998 |
| chr_2 | g4851 | g4851.t6 | exon | g4851.t6.exon3 | 5414047 | 5414084 |
| chr_2 | g4851 | g4851.t6 | TSS | g4851.t6 | NA | NA |
| chr_2 | g4851 | g4851.t6 | TTS | g4851.t6 | NA | NA |
Sequences
>g4851.t6 Gene=g4851 Length=709
AAAATTGTTGAAGAAGGTTGGGCAATTCAGATTAATTTTGAAGACTTAAATGAAGAAACA
TTGACGGAAGCAATAAATGAAATTTTGAACAATAAAAAATACAGTGATTATGTCAAAAGA
GAATCAGAATTATCAAGAGATAGACCAATGCATGCACAAGACACTGCAATTTATTGGGTT
GAATATATTTTAAGACATCATGGTGCACCGCATTTGCATTATCCTGGAGCTGATTTAAAT
TTCTTTCAAGATAATTCTATTGATGTTTTTTTATTTATTATTGCTGTTCTTTATGCAACA
TGGAAGCTATTGAAATTTATTTGTAAATTTTGCTTTTGTAGACAGAAGAAAAATATTGAA
AAACTTAAGAAAAATTAAATAAAAATAAAATTTTAAATTTTTATTTGTCACATCTTCTTC
TTATACATCTGAGCTGTCTTTGACGTGTGCATTTGCAAGCTTGACATGAATTTTTATACC
ACATTCGAGGTGTGCATTCCCATGGAACAGTATTGTCAATATCTTGAGGAAGAGTTGGCA
ATTGAACTATTGCTTCAGATATTCCTTGTTCACCAAATTCAGCTTCGAGTTCCGCATCAC
TGGTGATTTCATCACCTTCTACAGGCGCTTCATCATTGGCATTTGTTGGCACTACATCTG
AAATCAAATAAAATGCAGTGAAAATTAACACAAATAAGAAAAGTTTCAT
>g4851.t6 Gene=g4851 Length=76
MHAQDTAIYWVEYILRHHGAPHLHYPGADLNFFQDNSIDVFLFIIAVLYATWKLLKFICK
FCFCRQKKNIEKLKKN
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 1 | g4851.t6 | Pfam | PF00201 | UDP-glucoronosyl and UDP-glucosyl transferase | 4 | 66 | 3.5E-14 |
| 4 | g4851.t6 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 1 | 39 | - |
| 5 | g4851.t6 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 40 | 63 | - |
| 3 | g4851.t6 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 64 | 76 | - |
| 2 | g4851.t6 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 37 | 59 | - |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0008194 | UDP-glycosyltransferase activity | MF |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed