Gene loci information

Isoforms of this gene

  • There are 7 isoforms that are expressed from this gene.
  • The longest transcript is g4851.t1
  • List of isoforms

g4851.t1, g4851.t2, g4851.t3, g4851.t4, g4851.t5, g4851.t6, g4851.t7

The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively.

KEGG

Orthology

Pathway

  • This gene belongs to the following 1 pathways
ko00040
ko00053
ko00140
ko00830
ko00860
ko00980
ko00982
ko00983
ko01100
ko01110
ko01240
ko04976
ko05204
ko05207

This gene has too many mapped pathways (>3). Please look at the original KEGG entry above for pathway visualization.

Gene conservation patterns

Diptera wide analysis

The Orthogroup for the longest transcript (g4851.t1) is OG0000017. Other genes in this orthogroup contains the following. This list is ordered by phylogeny determined by OrthoFinder analysis. Genes from ENSEMBL are linked to their corresponding pages. For P. nubifer and P. vanderplanki, they are linked to the Midgebase1 and Midgebase2 pages.

Conservation

Organism Abb. ID No. Orthologs Ortholog ID
Atta cephalotes ACEPH 1 XP_012063341.1
Apis mellifera AMELL 4 GB47302-PA, GB47303-PA, GB55864-PA, GB40997-PA
Culicoides sonorensis CSONO 20 CSON005952-1, CSON003731-1, CSON000701-1, CSON014873-1, CSON003227-1, CSON009806-1, CSON005964-1, CSON000634-1, CSON011312-1, CSON012857-1, CSON003233-1, CSON001305-1, CSON001689-4, CSON004396-1, CSON007721-1, CSON003910-1, CSON009380-1, CSON002279-1, CSON014874-1, CSON001318-1
Polypedilum nubifer PNUBI 15 Pn.00964, Pn.09780, Pn.08034, Pn.07869, Pn.15039, Pn.07537, Pn.09779, Pn.12834, Pn.01566, Pn.00625, Pn.11022, Pn.00963, Pn.06959, Pn.11021, Pn.15038
Polypedilum vanderplanki PVAND 15 g876.t1, g4658.t1, g3643.t1, g2722.t1, g14790.t1, g877.t1, g4851.t1, g2723.t1, g2721.t1, g1893.t1, g5396.t1, g13413.t1, g803.t1, g10244.t1, g3645.t1
Polypedilum pembai PPEMB 11 g5374.t1, g3006.t1, g10043.t1, g1610.t1, g2408.t1, g14884.t1, g7369.t1, g6465.t1, g11230.t1, g13335.t1, g1379.t1
Belgica antarctica BANTA 11 IU25_11768-mRNA-1, IU25_11227-mRNA-1, IU25_02624-mRNA-1, IU25_11900-mRNA-1, IU25_11899-mRNA-1, IU25_05426-mRNA-1, IU25_10249-mRNA-1, IU25_10250-mRNA-1, IU25_11226-mRNA-1, IU25_11901-mRNA-1, IU25_05331-mRNA-1
Clunio marinus CMARI 4 CRK99007.1, CRK94411.1, CRK94936.1, CRK94520.1
Aedes aegypti lvpagwg AAEGYL 15 AAEL018041-PB, AAEL014244-PB, AAEL001822-PA, AAEL003098-PA, AAEL010386-PB, AAEL010381-PA, AAEL001816-PA, AAEL001533-PA, AAEL029008-PA, AAEL010390-PA, AAEL018042-PB, AAEL014246-PB, AAEL001548-PA, AAEL001586-PC, AAEL010366-PA
Culex quinquefasciatus quinquefasciatus CQUINQ 12 EDS40646.1, EDS37559.1, EDS40042.1, EDS37560.1, EDS34942.1, EDS33967.1, EDS35199.1, EDS37557.1, EDS35198.1, EDS37912.1, EDS40645.1, EDS40643.1
Culex quinquefasciatus CQUIN 12 CPIJ000352-PA, CPIJ003692-PA, CPIJ000351-PA, CPIJ000226-PA, CPIJ010762-PA, CPIJ012943-PA, CPIJ000225-PA, CPIJ003694-PA, CPIJ020264-PA, CPIJ000349-PA, CPIJ013923-PA, CPIJ003695-PA
Anopheles atroparvus AATRO 9 AATE016902-PA, AATE005807-PA, AATE008924-PA, AATE000458-PA, AATE003977-PA, AATE007342-PA, AATE005738-PA, AATE007102-PA, AATE012846-PA
Anopheles sinensis china ASINEC 6 ASIC017750-PA, ASIC016343-PA, ASIC019678-PA, ASIC018916-PA, ASIC018917-PA, ASIC020563-PA
Anopheles dirus ADIRU 10 ADIR015997-PA, ADIR007845-PA, ADIR015851-PA, ADIR007844-PA, ADIR007100-PA, ADIR015849-PA, ADIR007300-PA, ADIR000175-PA, ADIR004180-PA, ADIR015996-PA
Anopheles farauti AFARA 8 AFAF021617-PA, AFAF009431-PA, AFAF008301-PA, AFAF020852-PA, AFAF017289-PA, AFAF005740-PA, AFAF017045-PA, AFAF009919-PA
Anopheles epiroticus AEPIR 6 AEPI001524-PA, AEPI009252-PA, AEPI007901-PA, AEPI009264-PA, AEPI009263-PA, AEPI000260-PA
Anopheles christyi ACHRI 7 ACHR014337-PA, ACHR007251-PA, ACHR007864-PA, ACHR002264-PA, ACHR009048-PA, ACHR002265-PA, ACHR000729-PA
Anopheles merus AMERU 8 AMEM009259-PA, AMEM009018-PA, AMEM011708-PA, AMEM019586-PA, AMEM013047-PA, AMEM009073-PA, AMEM019587-PA, AMEM015138-PA
Anopheles melas AMELA 8 AMEC013329-PA, AMEC010882-PA, AMEC003194-PA, AMEC012506-PA, AMEC000026-PA, AMEC005887-PA, AMEC006960-PA, AMEC012293-PA
Anopheles arabiensis AARAB 10 AARA017895-PA, AARA011164-PA, AARA017520-PA, AARA017519-PA, AARA015807-PA, AARA018029-PA, AARA007987-PA, AARA009344-PA, AARA002731-PA, AARA009345-PA
Anopheles coluzzii ACOLU 10 ACOM030029-PA, ACOM041304-PA, ACOM031387-PA, ACOM030031-PA, ACOM025862-PA, ACOM040012-PA, ACOM030036-PA, ACOM025632-PA, ACOM025860-PA, ACOM031386-PA
Anopheles coluzzii ngousso ACOLUN 11 ACON007588-PA, ACON006222-PA, ACON028060-PA, ACON011564-PA, ACON008404-PA, ACON007374-PA, ACON007589-PA, ACON006223-PA, ACON007028-PA, ACON028212-PA, ACON007029-PA
Anopheles gambiae AGAMB 11 AGAP006222-PA, AGAP007374-PA, AGAP028060-PA, AGAP007589-PA, AGAP011564-PA, AGAP007588-PA, AGAP007029-PA, AGAP028212-PA, AGAP007028-PA, AGAP008404-PA, AGAP006223-PA
Anopheles quadriannulatus AQUAD 8 AQUA004506-PA, AQUA001963-PA, AQUA001962-PA, AQUA017231-PA, AQUA008725-PA, AQUA004052-PA, AQUA006139-PA, AQUA017230-PA
Anopheles minimus AMINI 8 AMIN010499-PA, AMIN016192-PA, AMIN011115-PA, AMIN005906-PA, AMIN008875-PA, AMIN016193-PA, AMIN011114-PA, AMIN010221-PA
Anopheles culicifacies ACULI 7 ACUA009306-PA, ACUA012284-PA, ACUA001022-PA, ACUA015546-PA, ACUA014976-PA, ACUA024744-PA, ACUA001740-PA
Anopheles funestus AFUNE 8 AFUN016158-PA, AFUN002058-PA, AFUN005786-PA, AFUN016302-PA, AFUN016159-PA, AFUN011189-PA, AFUN019845-PA, AFUN004354-PA
Anopheles stephensi indian ASTEPI 8 ASTEI11135-PA, ASTEI03891-PA, ASTEI01492-PA, ASTEI01329-PA, ASTEI11082-PA, ASTEI02575-PA, ASTEI02576-PA, ASTEI06614-PA
Anopheles stephensi ASTEP 7 ASTE008724-PA, ASTE008328-PA, ASTE004969-PA, ASTE005869-PA, ASTE001804-PA, ASTE008329-PA, ASTE008721-PA
Anopheles albimanus AALBI 8 AALB001015-PA, AALB004669-PA, AALB010106-PA, AALB004668-PA, AALB004537-PA, AALB015748-PA, AALB006205-PA, AALB015747-PA
Anopheles darlingi ADARL 10 ADAC005066-PA, ADAC007139-PA, ADAC007141-PA, ADAC002946-PA, ADAC007872-PA, ADAC000325-PA, ADAC007870-PA, ADAC000324-PA, ADAC007143-PA, ADAC007875-PA
Drosophila willistoni DWILL 22 FBpp0243888, FBpp0377659, FBpp0247300, FBpp0375812, FBpp0247377, FBpp0243890, FBpp0242418, FBpp0380017, FBpp0247380, FBpp0244696, FBpp0379179, FBpp0243889, FBpp0377709, FBpp0373842, FBpp0244947, FBpp0380079, FBpp0377928, FBpp0379834, FBpp0242420, FBpp0374787, FBpp0243885, FBpp0375949
Drosophila pseudoobscura DPSEU 16 FBpp0281079, FBpp0280100, FBpp0284858, FBpp0285615, FBpp0284860, FBpp0281082, FBpp0281078, FBpp0281077, FBpp0284859, FBpp0280099, FBpp0285616, FBpp0281081, FBpp0329656, FBpp0337898, FBpp0276929, FBpp0280098
Drosophila persimilis DPERS 17 FBpp0176154, FBpp0176151, FBpp0189617, FBpp0182894, FBpp0182896, FBpp0176666, FBpp0174869, FBpp0174870, FBpp0190390, FBpp0179276, FBpp0176150, FBpp0176665, FBpp0182895, FBpp0176155, FBpp0189618, FBpp0176152, FBpp0176664
Drosophila ananassae DANAN 26 FBpp0348478, FBpp0121452, FBpp0123130, FBpp0343038, FBpp0342199, FBpp0119921, FBpp0118554, FBpp0341550, FBpp0348226, FBpp0118250, FBpp0348712, FBpp0345586, FBpp0119923, FBpp0115308, FBpp0118157, FBpp0118558, FBpp0118555, FBpp0342655, FBpp0115309, FBpp0118940, FBpp0121453, FBpp0348649, FBpp0115307, FBpp0344464, FBpp0348602, FBpp0344949
Drosophila melanogaster DMELA 21 FBpp0080467, FBpp0081851, FBpp0080468, FBpp0112233, FBpp0081850, FBpp0081814, FBpp0081854, FBpp0085174, FBpp0306935, FBpp0291574, FBpp0080466, FBpp0081813, FBpp0082126, FBpp0071550, FBpp0300388, FBpp0086224, FBpp0078872, FBpp0080904, FBpp0071551, FBpp0081852, FBpp0080618
Drosophila sechellia DSECH 23 FBpp0207605, FBpp0198686, FBpp0192485, FBpp0201504, FBpp0198755, FBpp0207600, FBpp0207608, FBpp0205396, FBpp0207601, FBpp0207459, FBpp0207602, FBpp0207460, FBpp0204808, FBpp0207604, FBpp0207610, FBpp0198685, FBpp0200091, FBpp0198684, FBpp0197217, FBpp0201505, FBpp0205395, FBpp0197216, FBpp0193566
Drosophila simulans DSIMU 21 FBpp0321874, FBpp0324498, FBpp0219086, FBpp0220108, FBpp0223620, FBpp0219084, FBpp0319069, FBpp0217133, FBpp0314544, FBpp0221798, FBpp0219083, FBpp0325109, FBpp0219085, FBpp0214849, FBpp0222485, FBpp0314567, FBpp0326257, FBpp0222486, FBpp0316846, FBpp0219088, FBpp0223915
Drosophila erecta DEREC 15 FBpp0130415, FBpp0137771, FBpp0141320, FBpp0135789, FBpp0141319, FBpp0135790, FBpp0139663, FBpp0136437, FBpp0135794, FBpp0139341, FBpp0139771, FBpp0133063, FBpp0136448, FBpp0139340, FBpp0135791
Drosophila yakuba DYAKU 24 FBpp0359804, FBpp0269988, FBpp0269655, FBpp0268328, FBpp0258742, FBpp0269656, FBpp0258744, FBpp0356463, FBpp0258743, FBpp0271081, FBpp0269499, FBpp0257779, FBpp0271230, FBpp0258746, FBpp0259043, FBpp0258741, FBpp0269654, FBpp0269657, FBpp0271082, FBpp0271231, FBpp0269660, FBpp0257777, FBpp0269658, FBpp0258201
Drosophila virilis DVIRI 17 FBpp0237757, FBpp0394368, FBpp0231725, FBpp0234700, FBpp0231724, FBpp0401191, FBpp0231726, FBpp0394355, FBpp0231728, FBpp0238292, FBpp0227135, FBpp0229804, FBpp0238291, FBpp0238290, FBpp0400424, FBpp0229793, FBpp0237758
Drosophila mojavensis DMOJA 14 FBpp0171847, FBpp0166740, FBpp0171844, FBpp0166275, FBpp0387412, FBpp0168430, FBpp0166276, FBpp0168429, FBpp0159337, FBpp0160037, FBpp0171845, FBpp0163351, FBpp0168431, FBpp0167532
Drosophila grimshawi DGRIM 19 FBpp0408014, FBpp0415562, FBpp0404261, FBpp0152078, FBpp0145474, FBpp0417707, FBpp0410951, FBpp0412132, FBpp0152073, FBpp0145472, FBpp0153328, FBpp0409741, FBpp0407318, FBpp0416590, FBpp0153329, FBpp0409884, FBpp0413085, FBpp0419197, FBpp0152071
Lucilia cuprina LCUPR 7 KNC26177, KNC34854, KNC26716, KNC29857, KNC25155, KNC25453, KNC24662
Musca domestica MDOME 25 MDOA003793-PB, MDOA007127-PC, MDOA004072-PA, MDOA000242-PA, MDOA002229-PB, MDOA014202-PB, MDOA007887-PB, MDOA014177-PA, MDOA006534-PA, MDOA007025-PA, MDOA008583-PA, MDOA007924-PB, MDOA004744-PA, MDOA006473-PA, MDOA013091-PB, MDOA013195-PA, MDOA011133-PA, MDOA000664-PA, MDOA011619-PB, MDOA003261-PA, MDOA011870-PA, MDOA007841-PA, MDOA014555-PB, MDOA002231-PA, MDOA006846-PA
Stomoxys calcitrans SCALC 26 SCAU009216-PA, SCAU007652-PB, SCAU011439-PA, SCAU014340-PA, SCAU002342-PA, SCAU016299-PC, SCAU013645-PA, SCAU007327-PA, SCAU013935-PC, SCAU000356-PB, SCAU015878-PA, SCAU005077-PA, SCAU008331-PA, SCAU008114-PA, SCAU007932-PA, SCAU000450-PA, SCAU002168-PA, SCAU003226-PA, SCAU015804-PA, SCAU006754-PA, SCAU004251-PA, SCAU005727-PA, SCAU008601-PA, SCAU011291-PA, SCAU010256-PA, SCAU004377-PA
Glossina brevipalpis GBREV 6 GBRI041409-PA, GBRI022447-PA, GBRI041408-PA, GBRI002067-PA, GBRI039828-PA, GBRI022446-PA
Glossina palpalis GPALP 4 GPPI019441-PA, GPPI006407-PA, GPPI006401-PA, GPPI018692-PA
Glossina austeni GAUST 6 GAUT047117-PA, GAUT035315-PA, GAUT050908-PA, GAUT047111-PA, GAUT035321-PA, GAUT023304-PA
Glossina pallidipes GPALL 6 GPAI016086-PA, GPAI047041-PA, GPAI047042-PA, GPAI035414-PA, GPAI008979-PA, GPAI035412-PA
Glossina morsitans GMORS 6 GMOY011671-PA, GMOY005699-PA, GMOY007046-PA, GMOY010935-PA, GMOY011670-PA, GMOY005700-PA

Gene tree

Chironomidae-wide analysis

The Orthogroup for the longest transcript (g4851.t1) is OG0000396. Other genes in this orthogroup contains the following. [This data uses ab initio gene models predicted in Yoshida et al 2022, so most genes are not registered in public databases. Please contact the authors for more information on these data.]

Conservation

Organism Abb. ID Ortholog ID
Podonomus sp PODON TRINITY_DN20600_c0_g1_i1.p1
Parochlus steinenii PSTEI PSG03677, PSG03678, PSG03671
Trissopelopia nemorum TNEMO TRINITY_DN1339_c0_g1_i10.p1, TRINITY_DN5713_c0_g2_i1.p1, TRINITY_DN5713_c0_g1_i1.p1, TRINITY_DN1898_c0_g1_i1.p1, TRINITY_DN17829_c0_g1_i1.p1
Paraheptagyia tonnoiri PTONN TRINITY_DN1519_c0_g1_i2.p1
Telmatogeton pecinata TPECI none
Cricotopus draysoni CDRAY TRINITY_DN33936_c0_g1_i1.p1, TRINITY_DN87575_c0_g1_i1.p1, TRINITY_DN78348_c0_g1_i1.p1, TRINITY_DN14583_c0_g1_i1.p1, TRINITY_DN21316_c0_g1_i1.p1, TRINITY_DN55636_c0_g1_i1.p1, TRINITY_DN10471_c0_g1_i1.p1, TRINITY_DN909_c1_g1_i1.p1, TRINITY_DN108413_c0_g1_i1.p2
Clunio marinus CMARI CRK99007.1, CRK94936.1, CRK94520.1
Cardiocladius sp CARDI TRINITY_DN11358_c0_g1_i6.p1, TRINITY_DN4267_c0_g1_i15.p1, TRINITY_DN14174_c0_g1_i2.p1
Belgica antarctica BANTA IU25_11768-mRNA-1, IU25_10250-mRNA-1, IU25_10249-mRNA-1, IU25_05331-mRNA-1, IU25_11900-mRNA-1, IU25_11899-mRNA-1
Kiefferophyes invenustulus KINVE TRINITY_DN29000_c0_g2_i1.p1, TRINITY_DN29421_c0_g2_i3.p1, TRINITY_DN9879_c1_g1_i3.p1, TRINITY_DN158899_c0_g1_i2.p1, TRINITY_DN40589_c0_g1_i4.p1, TRINITY_DN66912_c0_g1_i8.p1, TRINITY_DN2754_c1_g1_i6.p1, TRINITY_DN40589_c0_g3_i1.p1, TRINITY_DN18328_c0_g1_i2.p1
Chironomus riparius CRIPA g3542.t1, g7870.t1, g4255.t1
Chironomus columbiensis CCOLU TRINITY_DN1130_c0_g1_i8.p1, TRINITY_DN847_c0_g1_i1.p1, TRINITY_DN15898_c0_g3_i1.p1, TRINITY_DN9381_c0_g1_i1.p1, TRINITY_DN847_c0_g2_i3.p1, TRINITY_DN15898_c0_g1_i1.p1
Chironomus tentans CTENT g3644.t1, g13717.t1, g11460.t1, g16510.t1
Chironomus dilutus CDILU TRINITY_DN29166_c0_g1_i1.p1, TRINITY_DN1760_c0_g1_i2.p1, TRINITY_DN10386_c0_g3_i2.p1, TRINITY_DN2273_c0_g1_i1.p1, TRINITY_DN7250_c0_g1_i1.p1
Polypedilum nubifer PNUBI Pn.00964, Pn.00963, Pn.07537, Pn.12834, Pn.00625
Polypedilum vanderplanki PVAND g13413.t1, g803.t1, g4851.t1
Polypedilum pembai PPEMB g6465.t1, g3006.t1, g11230.t1, g2408.t1, g1379.t1
Culicoides sonorensis CSONO CSON003227-1, CSON001305-1, CSON000701-1, CSON014874-1, CSON014873-1, CSON001318-1
Aedes aegypti lvpagwg AAEGYL AAEL001533-PA, AAEL001586-PC, AAEL001548-PA
Anopheles gambiae AGAMB AGAP011564-PA, AGAP007588-PA, AGAP007589-PA

Gene tree

Expression profile for this gene

Gene-level expression profile

Raw TPM values

Expression profile of isoforms

A heatmap representing isoforms with TPM > 0 in at least one sample. Expression profiles were are clustered based on the spearman correlation