General information for g4877.t4
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as hypothetical.
Parent gene
- The parent gene g4877 is located on chr_2: 5701336..5702126 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_2 | g4877 | g4877.t4 | TTS | g4877.t4 | 5701086 | 5701086 |
| chr_2 | g4877 | g4877.t4 | isoform | g4877.t4 | 5701336 | 5702126 |
| chr_2 | g4877 | g4877.t4 | exon | g4877.t4.exon1 | 5701336 | 5701857 |
| chr_2 | g4877 | g4877.t4 | cds | g4877.t4.CDS1 | 5701336 | 5701830 |
| chr_2 | g4877 | g4877.t4 | exon | g4877.t4.exon2 | 5701911 | 5702126 |
| chr_2 | g4877 | g4877.t4 | TSS | g4877.t4 | 5702192 | 5702192 |
Sequences
>g4877.t4 Gene=g4877 Length=738
ATGAGCAAATTGAGTTTGTATTATTCAATTATTTCACCACCATCACGATTTGCTTTGATT
GTTGCTAAAATGTTGGAATTAGATTTTGAGGAAAAGTAAGAAATTTTGTTTTAAATATTT
TTAAAAACAATTAAACTTTCTAATAACACTAGAGTTGTTGATCTTCTTTCTGGTAAACAT
TTGACTGAAGAATATCGACAAATAAATCCAAGTCAAACTGTTCCGGCTTTGGTTGATGGT
GATATGAAAATGTTTGACAGCAATGCAATTGCAATTTATTTGGTTGAAAAATATGCTAAA
GATGATTCATTGTATCCAAAAAATCTCGAACAACGTGCTAGAGTTAATGAGCAATTATTT
TACATTGCCAGCTATCTTTTTCCAAGAGGACTTATGGTAATTAAAGGTGGCTTATCTGGA
ACATTAACTGAAATTCCTCAAAAATCGATTGATGATTTTAACAGAGGCTATGAAGTAATC
GAAAGCTTTTTAAAAAATGTGGAATATCTTTCTGGATCATCTTTGACCTTGAGTGATCTT
TCATTGTGGTCTTTAATGGAATCAGGCGAACAAATTGTACCAATTGATGAAAATCGTTTT
CCGAATTTTGCTAAATGGATGAAGAAAATGAGACATGAAAACAAATTTAGTCAGCTTAAT
AAAGAAGGTGCAGATTTGCATATTAGTATTTTTAAACAATGTCTTGAAAAAAATCGAGCT
AAAGTTAATTCAAATTAA
>g4877.t4 Gene=g4877 Length=164
MKMFDSNAIAIYLVEKYAKDDSLYPKNLEQRARVNEQLFYIASYLFPRGLMVIKGGLSGT
LTEIPQKSIDDFNRGYEVIESFLKNVEYLSGSSLTLSDLSLWSLMESGEQIVPIDENRFP
NFAKWMKKMRHENKFSQLNKEGADLHISIFKQCLEKNRAKVNSN
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 5 | g4877.t4 | Gene3D | G3DSA:1.20.1050.10 | - | 19 | 161 | 0.0000000 |
| 2 | g4877.t4 | PANTHER | PTHR43969:SF3 | GLUTATHIONE S TRANSFERASE E11, ISOFORM A-RELATED | 3 | 160 | 0.0000000 |
| 3 | g4877.t4 | PANTHER | PTHR43969 | GLUTATHIONE S TRANSFERASE D10, ISOFORM A-RELATED | 3 | 160 | 0.0000000 |
| 1 | g4877.t4 | Pfam | PF14497 | Glutathione S-transferase, C-terminal domain | 76 | 134 | 0.0000017 |
| 7 | g4877.t4 | ProSiteProfiles | PS50404 | Soluble glutathione S-transferase N-terminal domain profile. | 1 | 21 | 8.9050000 |
| 6 | g4877.t4 | ProSiteProfiles | PS50405 | Soluble glutathione S-transferase C-terminal domain profile. | 27 | 161 | 15.7630000 |
| 8 | g4877.t4 | SFLD | SFLDS00019 | Glutathione Transferase (cytosolic) | 2 | 130 | 0.0000000 |
| 4 | g4877.t4 | SUPERFAMILY | SSF47616 | GST C-terminal domain-like | 22 | 142 | 0.0000000 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0006749 | glutathione metabolic process | BP |
| GO:0005515 | protein binding | MF |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed