Gene loci information

Isoforms of this gene

  • There are 3 isoforms that are expressed from this gene.
  • The longest transcript is g4877.t1
  • List of isoforms

g4877.t1, g4877.t3, g4877.t4

The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively.

KEGG

Orthology

Pathway

  • This gene belongs to the following 1 pathways
ko00480
ko00980
ko00982
ko00983
ko01100
ko01524
ko04212
ko05200
ko05204
ko05207
ko05208
ko05225
ko05418

This gene has too many mapped pathways (>3). Please look at the original KEGG entry above for pathway visualization.

Gene conservation patterns

Diptera wide analysis

The Orthogroup for the longest transcript (g4877.t1) is OG0000038. Other genes in this orthogroup contains the following. This list is ordered by phylogeny determined by OrthoFinder analysis. Genes from ENSEMBL are linked to their corresponding pages. For P. nubifer and P. vanderplanki, they are linked to the Midgebase1 and Midgebase2 pages.

Conservation

Organism Abb. ID No. Orthologs Ortholog ID
Atta cephalotes ACEPH 0 none
Apis mellifera AMELL 0 none
Culicoides sonorensis CSONO 1 CSON014103-1
Polypedilum nubifer PNUBI 5 Pn.16371, Pn.00653, Pn.15881, Pn.01309, Pn.02895
Polypedilum vanderplanki PVAND 6 g4877.t1, g15722.t1, g11946.t4, g11945.t1, g17514.t1, g14157.t1
Polypedilum pembai PPEMB 4 g10249.t1, g14541.t1, g12560.t1, g10062.t1
Belgica antarctica BANTA 4 IU25_09832-mRNA-1, IU25_06796-mRNA-1, IU25_08975-mRNA-1, IU25_08974-mRNA-1
Clunio marinus CMARI 3 CRL08282.1, CRL04184.1, CRK93117.1
Aedes aegypti lvpagwg AAEGYL 14 AAEL027519-PA, AAEL025173-PA, AAEL007962-PA, AAEL007946-PB, AAEL022511-PA, AAEL020409-PA, AAEL024134-PA, AAEL007954-PB, AAEL007951-PB, AAEL007948-PA, AAEL007964-PA, AAEL023692-PA, AAEL007947-PA, AAEL027003-PA
Culex quinquefasciatus quinquefasciatus CQUINQ 9 EDS27663.1, EDS27667.1, EDS27662.1, EDS27665.1, EDS27664.1, EDS27660.1, EDS27659.1, EDS27666.1, EDS27661.1
Culex quinquefasciatus CQUIN 9 CPIJ018632-PA, CPIJ018630-PA, CPIJ018624-PA, CPIJ018631-PA, CPIJ018629-PA, CPIJ018628-PA, CPIJ018627-PA, CPIJ018626-PA, CPIJ018625-PA
Anopheles atroparvus AATRO 12 AATE001021-PA, AATE015448-PA, AATE013952-PA, AATE017051-PA, AATE014169-PA, AATE014309-PA, AATE014234-PA, AATE002547-PA, AATE007877-PA, AATE002249-PA, AATE005619-PA, AATE020439-PA
Anopheles sinensis china ASINEC 6 ASIC006697-PA, ASIC020795-PA, ASIC006698-PA, ASIC020698-PA, ASIC006696-PA, ASIC020699-PA
Anopheles dirus ADIRU 6 ADIR015664-PA, ADIR015884-PA, ADIR015885-PA, ADIR015676-PA, ADIR015887-PA, ADIR015886-PA
Anopheles farauti AFARA 6 AFAF021740-PA, AFAF021739-PA, AFAF004623-PA, AFAF001166-PA, AFAF021731-PA, AFAF021732-PA
Anopheles epiroticus AEPIR 8 AEPI005790-PA, AEPI015109-PA, AEPI015108-PA, AEPI015074-PA, AEPI015110-PA, AEPI005789-PA, AEPI015107-PA, AEPI015105-PA
Anopheles christyi ACHRI 5 ACHR014953-PA, ACHR014938-PA, ACHR008592-PA, ACHR008593-PA, ACHR014944-PA
Anopheles merus AMERU 6 AMEM006239-PA, AMEM006110-PA, AMEM019006-PA, AMEM009375-PA, AMEM019005-PA, AMEM018057-PA
Anopheles melas AMELA 6 AMEC008007-PA, AMEC005414-PA, AMEC000534-PA, AMEC007694-PA, AMEC011110-PA, AMEC001556-PA
Anopheles arabiensis AARAB 6 AARA015648-PA, AARA008734-PA, AARA015729-PA, AARA015649-PA, AARA008732-PA, AARA015728-PA
Anopheles coluzzii ACOLU 6 ACOM042595-PA, ACOM042596-PA, ACOM042593-PA, ACOM027094-PA, ACOM042594-PA, ACOM027095-PA
Anopheles coluzzii ngousso ACOLUN 6 ACON009196-PA, ACON009192-PA, ACON009193-PA, ACON009195-PA, ACON009194-PA, ACON009197-PA
Anopheles gambiae AGAMB 6 AGAP009192-PA, AGAP009197-PA, AGAP009193-PA, AGAP009196-PA, AGAP009195-PA, AGAP009194-PA
Anopheles quadriannulatus AQUAD 6 AQUA016037-PA, AQUA010502-PA, AQUA016039-PA, AQUA016036-PA, AQUA010501-PA, AQUA016038-PA
Anopheles minimus AMINI 6 AMIN016011-PA, AMIN016017-PA, AMIN016014-PA, AMIN016013-PA, AMIN016015-PA, AMIN016016-PA
Anopheles culicifacies ACULI 5 ACUA009397-PA, ACUA022221-PA, ACUA016610-PA, ACUA004017-PA, ACUA028189-PA
Anopheles funestus AFUNE 6 AFUN015811-PA, AFUN015809-PA, AFUN015808-PA, AFUN015810-PA, AFUN001774-PA, AFUN015807-PA
Anopheles stephensi indian ASTEPI 7 ASTEI05225-PA, ASTEI11664-PA, ASTEI11729-PA, ASTEI05223-PA, ASTEI11636-PA, ASTEI05226-PA, ASTEI11637-PA
Anopheles stephensi ASTEP 6 ASTE016035-PA, ASTE016034-PA, ASTE016036-PA, ASTE016032-PA, ASTE015909-PA, ASTE016033-PA
Anopheles albimanus AALBI 5 AALB015734-PA, AALB015731-PA, AALB015732-PA, AALB015733-PA, AALB001441-PA
Anopheles darlingi ADARL 5 ADAC008205-PA, ADAC008200-PA, ADAC008211-PA, ADAC008212-PA, ADAC008209-PA
Drosophila willistoni DWILL 14 FBpp0252132, FBpp0252376, FBpp0252133, FBpp0252147, FBpp0252135, FBpp0252126, FBpp0252125, FBpp0252130, FBpp0252124, FBpp0252127, FBpp0250797, FBpp0252128, FBpp0252131, FBpp0252134
Drosophila pseudoobscura DPSEU 11 FBpp0278192, FBpp0278041, FBpp0278198, FBpp0278191, FBpp0278193, FBpp0278127, FBpp0276284, FBpp0278208, FBpp0278195, FBpp0278196, FBpp0278197
Drosophila persimilis DPERS 11 FBpp0181890, FBpp0181878, FBpp0181876, FBpp0181730, FBpp0181875, FBpp0181879, FBpp0181880, FBpp0181809, FBpp0180811, FBpp0181877, FBpp0181881
Drosophila ananassae DANAN 19 FBpp0115352, FBpp0115366, FBpp0115353, FBpp0115364, FBpp0115365, FBpp0115354, FBpp0115359, FBpp0115150, FBpp0115357, FBpp0115356, FBpp0115361, FBpp0350385, FBpp0115355, FBpp0115358, FBpp0115958, FBpp0115367, FBpp0115363, FBpp0116485, FBpp0115360
Drosophila melanogaster DMELA 13 FBpp0085905, FBpp0085876, FBpp0085858, FBpp0085853, FBpp0087660, FBpp0085852, FBpp0072341, FBpp0085856, FBpp0085851, FBpp0085857, FBpp0085854, FBpp0085850, FBpp0085855
Drosophila sechellia DSECH 15 FBpp0203354, FBpp0203368, FBpp0203357, FBpp0203356, FBpp0201385, FBpp0204570, FBpp0193273, FBpp0203351, FBpp0203352, FBpp0202575, FBpp0203355, FBpp0203359, FBpp0203360, FBpp0203353, FBpp0203358
Drosophila simulans DSIMU 16 FBpp0209779, FBpp0209777, FBpp0316462, FBpp0318879, FBpp0209778, FBpp0209780, FBpp0209035, FBpp0318190, FBpp0209773, FBpp0209776, FBpp0316164, FBpp0209772, FBpp0209775, FBpp0323308, FBpp0315945, FBpp0209774
Drosophila erecta DEREC 15 FBpp0140429, FBpp0140426, FBpp0140437, FBpp0141962, FBpp0140428, FBpp0140435, FBpp0138442, FBpp0140447, FBpp0140427, FBpp0140434, FBpp0139519, FBpp0140436, FBpp0140433, FBpp0140431, FBpp0140432
Drosophila yakuba DYAKU 14 FBpp0360351, FBpp0256985, FBpp0256973, FBpp0256976, FBpp0256430, FBpp0256972, FBpp0256968, FBpp0258924, FBpp0256974, FBpp0256971, FBpp0264267, FBpp0256975, FBpp0256970, FBpp0256967
Drosophila virilis DVIRI 10 FBpp0234310, FBpp0234320, FBpp0234309, FBpp0234308, FBpp0235774, FBpp0227296, FBpp0229379, FBpp0235501, FBpp0236867, FBpp0234311
Drosophila mojavensis DMOJA 11 FBpp0169350, FBpp0165841, FBpp0169340, FBpp0168732, FBpp0169281, FBpp0168605, FBpp0169341, FBpp0169339, FBpp0389250, FBpp0165840, FBpp0169338
Drosophila grimshawi DGRIM 10 FBpp0154124, FBpp0154302, FBpp0155577, FBpp0149880, FBpp0153620, FBpp0420639, FBpp0147475, FBpp0147474, FBpp0155575, FBpp0155448
Lucilia cuprina LCUPR 5 KNC32819, KNC29243, KNC29542, KNC26194, KNC29245
Musca domestica MDOME 10 MDOA007661-PA, MDOA001888-PA, MDOA012079-PA, MDOA011831-PA, MDOA001722-PA, MDOA002891-PA, MDOA014346-PA, MDOA004477-PA, MDOA004933-PA, MDOA009496-PA
Stomoxys calcitrans SCALC 8 SCAU009297-PA, SCAU007541-PA, SCAU007409-PA, SCAU013034-PA, SCAU002848-PA, SCAU013413-PA, SCAU004835-PA, SCAU004322-PA
Glossina brevipalpis GBREV 3 GBRI020663-PA, GBRI037692-PA, GBRI020614-PA
Glossina palpalis GPALP 3 GPPI042315-PA, GPPI001881-PA, GPPI037715-PA
Glossina austeni GAUST 4 GAUT037965-PA, GAUT037967-PA, GAUT012841-PA, GAUT027355-PA
Glossina pallidipes GPALL 3 GPAI006178-PA, GPAI044284-PA, GPAI006240-PA
Glossina morsitans GMORS 3 GMOY004361-PA, GMOY010887-PA, GMOY006685-PA

Gene tree

Chironomidae-wide analysis

The Orthogroup for the longest transcript (g4877.t1) is OG0000171. Other genes in this orthogroup contains the following. [This data uses ab initio gene models predicted in Yoshida et al 2022, so most genes are not registered in public databases. Please contact the authors for more information on these data.]

Conservation

Organism Abb. ID Ortholog ID
Podonomus sp PODON TRINITY_DN127333_c0_g1_i1.p1, TRINITY_DN9647_c0_g1_i5.p1, TRINITY_DN13210_c0_g1_i12.p1, TRINITY_DN0_c2116_g1_i1.p2
Parochlus steinenii PSTEI PSG04832, PSG02155
Trissopelopia nemorum TNEMO TRINITY_DN485_c0_g2_i1.p1, TRINITY_DN49_c5_g3_i1.p1, TRINITY_DN485_c0_g1_i1.p1
Paraheptagyia tonnoiri PTONN TRINITY_DN5815_c0_g1_i1.p1
Telmatogeton pecinata TPECI TRINITY_DN66727_c0_g1_i1.p1, TRINITY_DN25927_c0_g1_i1.p1, TRINITY_DN5742_c0_g1_i27.p1, TRINITY_DN48026_c0_g1_i1.p1, TRINITY_DN5104_c0_g1_i1.p1, TRINITY_DN8260_c0_g1_i3.p1
Cricotopus draysoni CDRAY TRINITY_DN45104_c0_g1_i1.p1, TRINITY_DN98978_c0_g1_i1.p1, TRINITY_DN45650_c0_g1_i1.p1, TRINITY_DN78111_c0_g1_i1.p1, TRINITY_DN1204_c0_g1_i1.p1, TRINITY_DN2413_c0_g1_i3.p1, TRINITY_DN9325_c0_g1_i2.p1, TRINITY_DN16696_c0_g1_i1.p1, TRINITY_DN56576_c0_g1_i1.p2, TRINITY_DN8333_c0_g1_i6.p1, TRINITY_DN8046_c0_g1_i1.p1
Clunio marinus CMARI CRL08282.1, CRL04184.1, CRK93117.1
Cardiocladius sp CARDI TRINITY_DN52009_c0_g1_i1.p1, TRINITY_DN4106_c0_g1_i1.p1, TRINITY_DN11048_c0_g1_i1.p1, TRINITY_DN53441_c0_g1_i1.p1, TRINITY_DN173_c0_g1_i7.p1, TRINITY_DN43809_c0_g1_i1.p1, TRINITY_DN8237_c0_g1_i1.p1, TRINITY_DN173_c0_g3_i2.p1
Belgica antarctica BANTA IU25_09832-mRNA-1, IU25_06796-mRNA-1, IU25_08975-mRNA-1, IU25_08974-mRNA-1
Kiefferophyes invenustulus KINVE TRINITY_DN38028_c0_g1_i1.p1, TRINITY_DN229519_c0_g1_i1.p1, TRINITY_DN231196_c0_g1_i1.p1, TRINITY_DN4301_c1_g1_i1.p1, TRINITY_DN19645_c0_g4_i1.p1, TRINITY_DN172045_c0_g1_i1.p2, TRINITY_DN60127_c0_g1_i1.p1, TRINITY_DN184739_c0_g1_i1.p1, TRINITY_DN78061_c1_g1_i1.p1, TRINITY_DN214030_c0_g1_i1.p1, TRINITY_DN63188_c0_g1_i1.p1, TRINITY_DN5394_c0_g1_i12.p1, TRINITY_DN4301_c0_g1_i1.p1, TRINITY_DN88731_c0_g1_i1.p1, TRINITY_DN89215_c0_g1_i1.p1, TRINITY_DN218391_c0_g1_i1.p1
Chironomus riparius CRIPA g13945.t1, g5698.t1, g383.t1, g15380.t1
Chironomus columbiensis CCOLU TRINITY_DN7306_c0_g1_i1.p1, TRINITY_DN10174_c0_g1_i1.p1, TRINITY_DN8052_c0_g1_i2.p1, TRINITY_DN76836_c0_g1_i1.p1, TRINITY_DN2099_c1_g1_i4.p1, TRINITY_DN5160_c0_g1_i1.p1, TRINITY_DN697_c0_g1_i1.p1
Chironomus tentans CTENT g3513.t1, g12112.t1, g9451.t1, g14191.t1, g16856.t1, g15573.t1
Chironomus dilutus CDILU TRINITY_DN2606_c0_g1_i1.p1, TRINITY_DN24132_c0_g1_i1.p1, TRINITY_DN7750_c0_g1_i1.p1, TRINITY_DN232_c1_g1_i2.p1
Polypedilum nubifer PNUBI Pn.02894, Pn.16371, Pn.00653, Pn.15881, Pn.01309, Pn.02895
Polypedilum vanderplanki PVAND g4877.t1, g17450.t1, g15722.t1, g11946.t4, g11945.t1, g17514.t1, g14157.t1
Polypedilum pembai PPEMB g10249.t1, g14541.t1, g12560.t1, g10062.t1, g2386.t1, g10248.t1
Culicoides sonorensis CSONO CSON014103-1
Aedes aegypti lvpagwg AAEGYL AAEL027519-PA, AAEL025173-PA, AAEL007962-PA, AAEL007946-PB, AAEL022511-PA, AAEL020409-PA, AAEL024134-PA, AAEL007954-PB, AAEL007951-PB, AAEL007948-PA, AAEL007964-PA, AAEL023692-PA, AAEL007947-PA, AAEL027003-PA
Anopheles gambiae AGAMB AGAP009192-PA, AGAP009197-PA, AGAP009193-PA, AGAP009196-PA, AGAP009191-PA, AGAP009195-PA, AGAP009194-PA

Gene tree

Expression profile for this gene

Gene-level expression profile

Raw TPM values

Expression profile of isoforms

A heatmap representing isoforms with TPM > 0 in at least one sample. Expression profiles were are clustered based on the spearman correlation