Gene loci information

Transcript annotation

  • This transcript has been annotated as Myosin heavy chain, muscle.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_2 g5157 g5157.t1 TTS g5157.t1 7331353 7331353
chr_2 g5157 g5157.t1 isoform g5157.t1 7331486 7337635
chr_2 g5157 g5157.t1 exon g5157.t1.exon1 7331486 7331539
chr_2 g5157 g5157.t1 cds g5157.t1.CDS1 7331486 7331539
chr_2 g5157 g5157.t1 exon g5157.t1.exon2 7332104 7334185
chr_2 g5157 g5157.t1 cds g5157.t1.CDS2 7332104 7334185
chr_2 g5157 g5157.t1 exon g5157.t1.exon3 7334476 7334554
chr_2 g5157 g5157.t1 cds g5157.t1.CDS3 7334476 7334554
chr_2 g5157 g5157.t1 exon g5157.t1.exon4 7334908 7335794
chr_2 g5157 g5157.t1 cds g5157.t1.CDS4 7334908 7335794
chr_2 g5157 g5157.t1 exon g5157.t1.exon5 7336096 7336305
chr_2 g5157 g5157.t1 cds g5157.t1.CDS5 7336096 7336305
chr_2 g5157 g5157.t1 exon g5157.t1.exon6 7337138 7337401
chr_2 g5157 g5157.t1 cds g5157.t1.CDS6 7337138 7337401
chr_2 g5157 g5157.t1 exon g5157.t1.exon7 7337600 7337635
chr_2 g5157 g5157.t1 cds g5157.t1.CDS7 7337600 7337635
chr_2 g5157 g5157.t1 TSS g5157.t1 NA NA

Sequences

>g5157.t1 Gene=g5157 Length=3612
ATGCCCGAAGAAAACTTCCGTTTGGGTAAAACCAAGGTCTTCTTCCGTGCTGGTGTCTTG
GGTCAAATGGAAGAATTCCGTGATGAACGTCTTAGCCGTATCATGTCATGGATGCAAGGT
TGGGCCCGTGGTTACCTTACACGTAAGGTCTTCAAGAAGTTGCAAGAACAACGTCTTGCC
CTTACTGTCGTCCAACGTGCATTGCGCAGATACCTCAAGCTTCGCACTTGGCCATGGTGG
AAATTGTGGCAAAAAGTCAAGCCACTCCTCAATGCCTCGCGTATTGAAGATCAAATTGCT
AAACTTGAAGAGAAGGCACAAAAGGCCCAAGAAGCCTTCGAAAAGGAAGAGAAAGCTCGT
AAGGAATTGGAATCTCTTAATGCCAAATTGTTGGCTGAGAAGACAGCTCTTTTGGACTCA
TTGTCTGGTGAGAAGGGTGCCCTTCAAGATTATCAAGAAAAGTGCGCCAAGATTCAAGCC
CAAAAGAACGATTTGGACAACCAATTGCGTGACACACAAGAGCGATTGGCTTCAGAAGAA
GATGCCCGCAATCAATTGTTCCAAGCCAAAAAGAAGTGCGAACAAGAGATCGCTGGCTTG
AAGAAGGATTTGGAAGACTTGGAACTTTCAATCCAAAAATCAGAGCAAGACAAGTCATCA
AAGGATCACCAAATCCGCAATTTGAATGATGAAATCGCCCATCAGGATGAACTCATCAAC
AAATTGAACAAGGAAAAGAAAATGCAAGGTGAAACCAACCAAAAGACCGCCGAGGAATTG
CAAGCTGCTGAAGACAAAGTCAACCATTTGAACAAAGTCAAGGCCAAGCTTGAACAGACC
CTCGATGAATTGGAGGACTCACTTGAACGTGAGAAGAAACTCCGTGGTGATGTTGAAAAG
AGCAAACGTAAGGTTGAAGGTGACTTGAAACTCACACAAGAGGCTGTTGCTGATTTGGAA
CGCAACAAGAAGGAACTTGAACAAACCATCCAACGTAAGGATAAGGAAATTTCATCACTC
ACCGCCAAATTAGAAGATGAACAATCATTGGTTGGCAAATTGCAAAAACAAATCAAGGAA
CTTCAATCACGCATTGAAGAACTCGAAGAAGAAGTTGAAGCTGAACGTCAAGCTCGTGCC
AAGGCTGAAAAACAACGTGCTGATTTGGCTCGTGAATTGGAAGAATTGGGTGAACGTCTT
GAAGAAGCCGGTGGTGCCACATCAGCTCAAATTGAGCTCAACAAGAAGCGTGAAGCTGAA
TTGGCCAAATTGCGCCGTGATTTGGAAGAAGCCAACATTCAACATGAAGGCACATTGGCC
AACTTACGCAAGAAGCACAATGATGCTGTCGCTGAGATGGCTGAACAAGTTGATCAACTC
AACAAATTGAAGACCAAAGCTGAGAAGGAAAGATCACAATACTTCGGTGAAGTCAATGAT
CTCCGCCACAGCCTCGACACAGTTGCTAACGAAAAGGCCGCACAAGAAAAGATTGCCAAG
CAAATGCAACACACACTTAATGAAGTCCAAGGCAAATTAGATGAAACCAACCGCACATTG
AATGACTTTGATGCACAAAAGAAGAAGTTGTCAATTGAAAACTCAGATCTCCTTCGTCAA
TTGGAAGAGGCTGAATCACAAGTCTCACAATTGTCAAAGATCAAGATCTCACTCACACAA
CAATTGGAAGATACCAAGCGTCTTGCCGACGAGGAGGCTCGTGAACGTGCCACACTTTTG
GGCAAATTCCGCAACTTGGAACATGACTTGGATAACTTGCGTGAACAAGTTGAAGAAGAA
GCTGAAGGCAAAGCTGATATGCAACGTCAACTCAGCAAGGCCAACGCTGAAGCTCAATTG
TGGCGTGCCAAGTACGAGTCAGAGGGTGTTGCTCGCGCTGAAGAATTGGAAGAAGCCAAG
CGCAAGCTCCAAGCTCGTCTTGCCGAAGCAGAAGAAACAATCGAATCACTCAACCAAAAA
TGCGTTGCATTGGAAAAGACCAAGCAACGTCTTGCCACAGAAGTCGAAGACTTGCAATTG
GAAGTCGACCGTGCCACAGCTATTGCCAACGCTGCCGAGAAGAAACAAAAGGCATTCGAC
AAAATTATTGGCGAATGGAAACTCAAGGTCGACGATCTCGCTGCCGAGCTTGATGCATCA
CAAAAGGAATGCCGCAACTACTCAACCGAACTCTTCCGTCTCAAGGGAGCCTACGAAGAA
GGACAAGAACAATTGGAAGCTGTCCGTCGTGAGAACAAGAATCTCGCTGATGAAGTTAAG
GACTTGCTCGACCAAATCGGTGAGGGTGGTCGCAACATTCACGAAATCGAAAAGGCACGC
AAACGTCTTGAAGTTGAGAAAGACGAATTGCAAGCCGCTCTTGAGGAAGCTGAAGCTGCC
TTGGAACAAGAAGAAAACAAGGTTCTCCGCGCTCAACTCGAATTGTCACAAGTTCGTCAA
GAAATCGACAGACGCATCCAAGAGAAGGAGGAAGAATTCGAAAACACACGCAAGAATCAC
CAACGTGCACTCGACTCAATGCAAGCTTCACTCGAAGCCGAGGCTAAGGGTAAGGCTGAG
GCTCTTCGCATGAAGAAGAAGTTGGAAGCTGACATCAATGAACTCGAAATTGCTTTGGAT
CACGCCAACAAGGCCAACGCTGAAGCACAGAAGAACATCAAACGCTACCAACAACAACTC
AAAGACTTGCAAACCGCCCTCGAAGAAGAACAACGTGCACGTGATGATGCTCGTGAACAA
CTTGGAATCTCAGAACGCCGTGCCAATGCCCTTCAAAACGAATTGGAGGAATCACGTACA
CTTTTGGAACAAGCTGACCGCGGCCGTCGTCAAGCTGAGCAAGAATTGGGTGATGCTCAT
GAGCAACTCAACGAACTCTCAGCCCAAAACGCCTCAGTCGCTGCTGCCAAGAGAAAGTTG
GAAGCCGAATTACAAACACTCCACTCAGACTTGGATGAATTGTTGAATGAAGCCAAGAAC
TCAGAAGAGAAGGCCAAGAAGGCAATGGTTGATGCTGCCCGTCTTGCTGATGAACTTCGT
GCTGAACAAGACCATGCACAAACACAAGAGAAATTACGCAAGGCCCTTGAAACTCAAATC
AAGGAATTGCAAGTTCGCTTGGATGAAGCTGAACAAAACGCACTCAAGGGAGGCAAGAAA
GCCATCCAAAAACTCGAACAACGCGTCCGCGAATTGGAGAATGAATTGGACGGTGAACAA
CGCAGACATGCTGATGCCCAAAAGAACCTCCGCAAGGGCGAACGTCGCATTAAGGAATTG
AGCTTCCAATCAGAAGAAGACCGCAAGAACCACGAACGTATGCAAGACTTGGTTGACAAA
CTCCAACAAAAGATCAAGACATACAAGAGACAAATTGAGGAAGCTGAAGAAATTGCTGCC
CTCAACTTGGCCAAATTCCGTAAGGCACAACAAGAATTGGAAGAGTCAGAAGAACGCGCT
GACTTGGCCGAACAAGCAATCAGCAAATTCAGAGCAAAGGGACGTGGCGGTTCAGTCGCA
CGCGGTGCCAGCCCAGTGCCCCAAAGACCAAACCGCCCATTGGCTGATGGATTGTTCGGA
TTTGACGAATAA

>g5157.t1 Gene=g5157 Length=1203
MPEENFRLGKTKVFFRAGVLGQMEEFRDERLSRIMSWMQGWARGYLTRKVFKKLQEQRLA
LTVVQRALRRYLKLRTWPWWKLWQKVKPLLNASRIEDQIAKLEEKAQKAQEAFEKEEKAR
KELESLNAKLLAEKTALLDSLSGEKGALQDYQEKCAKIQAQKNDLDNQLRDTQERLASEE
DARNQLFQAKKKCEQEIAGLKKDLEDLELSIQKSEQDKSSKDHQIRNLNDEIAHQDELIN
KLNKEKKMQGETNQKTAEELQAAEDKVNHLNKVKAKLEQTLDELEDSLEREKKLRGDVEK
SKRKVEGDLKLTQEAVADLERNKKELEQTIQRKDKEISSLTAKLEDEQSLVGKLQKQIKE
LQSRIEELEEEVEAERQARAKAEKQRADLARELEELGERLEEAGGATSAQIELNKKREAE
LAKLRRDLEEANIQHEGTLANLRKKHNDAVAEMAEQVDQLNKLKTKAEKERSQYFGEVND
LRHSLDTVANEKAAQEKIAKQMQHTLNEVQGKLDETNRTLNDFDAQKKKLSIENSDLLRQ
LEEAESQVSQLSKIKISLTQQLEDTKRLADEEARERATLLGKFRNLEHDLDNLREQVEEE
AEGKADMQRQLSKANAEAQLWRAKYESEGVARAEELEEAKRKLQARLAEAEETIESLNQK
CVALEKTKQRLATEVEDLQLEVDRATAIANAAEKKQKAFDKIIGEWKLKVDDLAAELDAS
QKECRNYSTELFRLKGAYEEGQEQLEAVRRENKNLADEVKDLLDQIGEGGRNIHEIEKAR
KRLEVEKDELQAALEEAEAALEQEENKVLRAQLELSQVRQEIDRRIQEKEEEFENTRKNH
QRALDSMQASLEAEAKGKAEALRMKKKLEADINELEIALDHANKANAEAQKNIKRYQQQL
KDLQTALEEEQRARDDAREQLGISERRANALQNELEESRTLLEQADRGRRQAEQELGDAH
EQLNELSAQNASVAAAKRKLEAELQTLHSDLDELLNEAKNSEEKAKKAMVDAARLADELR
AEQDHAQTQEKLRKALETQIKELQVRLDEAEQNALKGGKKAIQKLEQRVRELENELDGEQ
RRHADAQKNLRKGERRIKELSFQSEEDRKNHERMQDLVDKLQQKIKTYKRQIEEAEEIAA
LNLAKFRKAQQELEESEERADLAEQAISKFRAKGRGGSVARGASPVPQRPNRPLADGLFG
FDE

Protein features from InterProScan

Transcript Database ID Name Start End E.value
22 g5157.t1 Coils Coil Coil 92 136 -
24 g5157.t1 Coils Coil Coil 148 245 -
26 g5157.t1 Coils Coil Coil 253 406 -
20 g5157.t1 Coils Coil Coil 414 473 -
21 g5157.t1 Coils Coil Coil 499 624 -
28 g5157.t1 Coils Coil Coil 633 695 -
25 g5157.t1 Coils Coil Coil 703 765 -
23 g5157.t1 Coils Coil Coil 773 850 -
27 g5157.t1 Coils Coil Coil 858 1173 -
18 g5157.t1 Gene3D G3DSA:3.30.70.1590 - 1 28 4.3E-8
17 g5157.t1 Gene3D G3DSA:4.10.270.10 Myosin 29 87 2.1E-23
19 g5157.t1 Gene3D G3DSA:1.20.5.340 - 88 213 4.0E-31
13 g5157.t1 Gene3D G3DSA:1.20.5.1050 - 215 324 5.0E-6
15 g5157.t1 Gene3D G3DSA:1.20.5.370 - 787 824 1.5E-7
16 g5157.t1 Gene3D G3DSA:1.20.5.370 - 825 871 1.6E-11
14 g5157.t1 Gene3D G3DSA:1.20.5.370 - 872 915 8.3E-5
11 g5157.t1 MobiDBLite mobidb-lite consensus disorder prediction 1074 1113 -
12 g5157.t1 MobiDBLite mobidb-lite consensus disorder prediction 1173 1203 -
2 g5157.t1 PANTHER PTHR45615:SF12 MYOSIN-4 2 1160 0.0
3 g5157.t1 PANTHER PTHR45615 MYOSIN HEAVY CHAIN, NON-MUSCLE 2 1160 0.0
1 g5157.t1 Pfam PF01576 Myosin tail 94 1173 2.6E-166
29 g5157.t1 ProSiteProfiles PS51456 Myosin motor domain profile. 1 28 13.971
30 g5157.t1 ProSiteProfiles PS50096 IQ motif profile. 31 60 7.84
10 g5157.t1 SUPERFAMILY SSF52540 P-loop containing nucleoside triphosphate hydrolases 2 90 1.49E-15
7 g5157.t1 SUPERFAMILY SSF90257 Myosin rod fragments 88 213 1.19E-22
9 g5157.t1 SUPERFAMILY SSF90257 Myosin rod fragments 210 321 2.09E-22
6 g5157.t1 SUPERFAMILY SSF90257 Myosin rod fragments 316 432 1.33E-6
8 g5157.t1 SUPERFAMILY SSF90257 Myosin rod fragments 486 600 3.4E-24
5 g5157.t1 SUPERFAMILY SSF90257 Myosin rod fragments 680 801 1.28E-10
4 g5157.t1 SUPERFAMILY SSF90257 Myosin rod fragments 879 994 1.83E-9

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

Data is missing for g5157/g5157.t1; file /home/yuki.yoshida/nias/analysis/reanalysis/18_revice/midgebase/iupred3/g5157.t1.fa.iupred3.txt does not exist

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0005524 ATP binding MF
GO:0005515 protein binding MF
GO:0016459 myosin complex CC
GO:0003774 cytoskeletal motor activity MF

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed