Gene loci information

Isoforms of this gene

  • There are 22 isoforms that are expressed from this gene.
  • The longest transcript is g5157.t2
  • List of isoforms

g5157.t1, g5157.t2, g5157.t3, g5157.t4, g5157.t5, g5157.t6, g5157.t7, g5157.t9, g5157.t10, g5157.t11, g5157.t12, g5157.t13, g5157.t14, g5157.t15, g5157.t16, g5157.t17, g5157.t18, g5157.t19, g5157.t20, g5157.t21, g5157.t22, g5157.t23

The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively.

KEGG

Orthology

Pathway

  • This gene belongs to the following 1 pathways
ko04022
ko04260
ko04261
ko04919
ko05410
ko05414
ko05416

This gene has too many mapped pathways (>3). Please look at the original KEGG entry above for pathway visualization.

Gene conservation patterns

Diptera wide analysis

The Orthogroup for the longest transcript (g5157.t2) is OG0000361. Other genes in this orthogroup contains the following. This list is ordered by phylogeny determined by OrthoFinder analysis. Genes from ENSEMBL are linked to their corresponding pages. For P. nubifer and P. vanderplanki, they are linked to the Midgebase1 and Midgebase2 pages.

Conservation

Organism Abb. ID No. Orthologs Ortholog ID
Atta cephalotes ACEPH 3 XP_012054430.1, XP_012056109.1, XP_012061942.1
Apis mellifera AMELL 4 GB51734-PA, GB51653-PA, GB46812-PA, GB51652-PA
Culicoides sonorensis CSONO 3 CSON005281-1, CSON000536-1, CSON012990-1
Polypedilum nubifer PNUBI 4 Pn.06202, Pn.07732, Pn.04838, Pn.06285
Polypedilum vanderplanki PVAND 3 g13357.t1, g5157.t2, g12034.t1
Polypedilum pembai PPEMB 4 g12361.t1, g14353.t1, g8604.t1, g8605.t1
Belgica antarctica BANTA 2 IU25_00188-mRNA-1, IU25_08091-mRNA-1
Clunio marinus CMARI 2 CRL04792.1, CRK93365.1
Aedes aegypti lvpagwg AAEGYL 4 AAEL005656-PA, AAEL021838-PA, AAEL026217-PA, AAEL001411-PA
Culex quinquefasciatus quinquefasciatus CQUINQ 5 EDS44958.1, EDS42916.1, EDS44962.1, EDS44957.1, EDS44961.1
Culex quinquefasciatus CQUIN 5 CPIJ000853-PA, CPIJ015899-PA, CPIJ000849-PA, CPIJ000848-PA, CPIJ000852-PA
Anopheles atroparvus AATRO 2 AATE009474-PA, AATE014533-PA
Anopheles sinensis china ASINEC 2 ASIC017356-PA, ASIC019838-PA
Anopheles dirus ADIRU 2 ADIR007192-PA, ADIR009694-PA
Anopheles farauti AFARA 2 AFAF013053-PA, AFAF018625-PA
Anopheles epiroticus AEPIR 2 AEPI009145-PA, AEPI002978-PA
Anopheles christyi ACHRI 2 ACHR000056-PA, ACHR001426-PA
Anopheles merus AMERU 2 AMEM012531-PA, AMEM008617-PA
Anopheles melas AMELA 2 AMEC011710-PA, AMEC006236-PA
Anopheles arabiensis AARAB 2 AARA015944-PA, AARA003651-PA
Anopheles coluzzii ACOLU 3 ACOM025756-PA, ACOM022483-PA, ACOM022482-PA
Anopheles coluzzii ngousso ACOLUN 2 ACON010147-PB, ACON007523-PA
Anopheles gambiae AGAMB 2 AGAP010147-PA, AGAP007523-PA
Anopheles quadriannulatus AQUAD 2 AQUA017169-PA, AQUA010696-PA
Anopheles minimus AMINI 2 AMIN007227-PA, AMIN010404-PA
Anopheles culicifacies ACULI 4 ACUA010997-PA, ACUA010290-PA, ACUA016989-PA, ACUA007311-PA
Anopheles funestus AFUNE 2 AFUN020885-PA, AFUN002198-PA
Anopheles stephensi indian ASTEPI 2 ASTEI08311-PA, ASTEI01433-PA
Anopheles stephensi ASTEP 2 ASTE002372-PA, ASTE007942-PA
Anopheles albimanus AALBI 2 AALB007909-PA, AALB005170-PA
Anopheles darlingi ADARL 3 ADAC005702-PA, ADAC010498-PA, ADAC010496-PA
Drosophila willistoni DWILL 2 FBpp0378740, FBpp0374344
Drosophila pseudoobscura DPSEU 2 FBpp0277056, FBpp0329353
Drosophila persimilis DPERS 2 FBpp0174993, FBpp0182892
Drosophila ananassae DANAN 2 FBpp0348174, FBpp0342163
Drosophila melanogaster DMELA 2 FBpp0072306, FBpp0080452
Drosophila sechellia DSECH 2 FBpp0198681, FBpp0193243
Drosophila simulans DSIMU 2 FBpp0313536, FBpp0312629
Drosophila erecta DEREC 2 FBpp0138411, FBpp0364748
Drosophila yakuba DYAKU 2 FBpp0356203, FBpp0354107
Drosophila virilis DVIRI 2 FBpp0397498, FBpp0391285
Drosophila mojavensis DMOJA 2 FBpp0168343, FBpp0380458
Drosophila grimshawi DGRIM 2 FBpp0403198, FBpp0405039
Lucilia cuprina LCUPR 3 KNC22247, KNC32358, KNC33336
Musca domestica MDOME 2 MDOA001022-PA, MDOA007664-PB
Stomoxys calcitrans SCALC 2 SCAU001652-PA, SCAU015727-PA
Glossina brevipalpis GBREV 2 GBRI043915-PA, GBRI039838-PA
Glossina palpalis GPALP 3 GPPI006635-PA, GPPI051253-PA, GPPI001670-PA
Glossina austeni GAUST 4 GAUT037009-PA, GAUT048431-PA, GAUT037011-PA, GAUT001135-PA
Glossina pallidipes GPALL 2 GPAI040411-PA, GPAI035411-PA
Glossina morsitans GMORS 2 GMOY008852-PA, GMOY005703-PA

Gene tree

Chironomidae-wide analysis

The Orthogroup for the longest transcript (g5157.t2) is OG0000299. Other genes in this orthogroup contains the following. [This data uses ab initio gene models predicted in Yoshida et al 2022, so most genes are not registered in public databases. Please contact the authors for more information on these data.]

Conservation

Organism Abb. ID Ortholog ID
Podonomus sp PODON TRINITY_DN1992_c278_g1_i1.p1, TRINITY_DN1992_c175_g1_i1.p1, TRINITY_DN28415_c0_g1_i2.p1, TRINITY_DN13648_c0_g1_i1.p3, TRINITY_DN55548_c0_g1_i1.p1, TRINITY_DN1992_c52_g4_i1.p4, TRINITY_DN54239_c0_g1_i6.p6, TRINITY_DN45797_c0_g1_i1.p1, TRINITY_DN1992_c103_g1_i1.p3, TRINITY_DN93170_c0_g1_i1.p2, TRINITY_DN55548_c0_g2_i1.p1, TRINITY_DN119127_c0_g1_i1.p1, TRINITY_DN1992_c52_g1_i1.p3
Parochlus steinenii PSTEI PSG07938, PSG06435, PSG06434
Trissopelopia nemorum TNEMO TRINITY_DN97_c110_g1_i1.p1, TRINITY_DN25530_c0_g1_i1.p1, TRINITY_DN2134_c0_g1_i7.p1, TRINITY_DN97_c108_g1_i1.p1
Paraheptagyia tonnoiri PTONN TRINITY_DN284_c0_g4_i2.p1, TRINITY_DN3786_c0_g1_i6.p1, TRINITY_DN26731_c0_g1_i1.p2, TRINITY_DN0_c1335_g1_i1.p2
Telmatogeton pecinata TPECI TRINITY_DN31568_c1_g1_i1.p1, TRINITY_DN67259_c0_g1_i1.p1, TRINITY_DN6103_c0_g2_i1.p3, TRINITY_DN8803_c0_g2_i1.p4, TRINITY_DN6103_c0_g3_i1.p1
Cricotopus draysoni CDRAY TRINITY_DN108927_c0_g1_i1.p1, TRINITY_DN0_c0_g1_i7.p1, TRINITY_DN78009_c0_g1_i1.p1, TRINITY_DN83388_c0_g1_i1.p1, TRINITY_DN26326_c0_g1_i1.p1, TRINITY_DN112704_c0_g1_i1.p1
Clunio marinus CMARI none
Cardiocladius sp CARDI TRINITY_DN4086_c0_g1_i1.p1, TRINITY_DN14589_c0_g1_i1.p1, TRINITY_DN18914_c3_g1_i1.p2, TRINITY_DN54584_c12_g1_i1.p2, TRINITY_DN4086_c0_g3_i1.p3, TRINITY_DN0_c0_g1_i2.p1, TRINITY_DN38995_c0_g1_i1.p1, TRINITY_DN4086_c2_g1_i1.p3, TRINITY_DN20320_c0_g1_i2.p1, TRINITY_DN6_c27_g1_i1.p1, TRINITY_DN41934_c0_g1_i1.p1, TRINITY_DN2026_c0_g2_i1.p2, TRINITY_DN36411_c0_g1_i1.p2
Belgica antarctica BANTA IU25_08091-mRNA-1
Kiefferophyes invenustulus KINVE TRINITY_DN6009_c0_g1_i1.p1, TRINITY_DN42483_c1_g1_i1.p1, TRINITY_DN18663_c0_g1_i1.p1, TRINITY_DN6009_c0_g2_i2.p1, TRINITY_DN54291_c0_g1_i2.p1, TRINITY_DN42483_c0_g1_i1.p1, TRINITY_DN29015_c0_g2_i2.p1, TRINITY_DN31052_c0_g1_i1.p1, TRINITY_DN238403_c0_g1_i1.p1, TRINITY_DN29015_c0_g1_i4.p1, TRINITY_DN31802_c0_g1_i1.p2, TRINITY_DN83526_c0_g1_i1.p1, TRINITY_DN43989_c0_g1_i3.p1, TRINITY_DN29015_c0_g3_i2.p1
Chironomus riparius CRIPA g293.t1
Chironomus columbiensis CCOLU TRINITY_DN8398_c1_g1_i1.p1, TRINITY_DN75783_c0_g1_i1.p1, TRINITY_DN69559_c0_g1_i1.p1, TRINITY_DN26038_c1_g1_i1.p1, TRINITY_DN19536_c0_g1_i1.p3, TRINITY_DN35380_c0_g2_i1.p1, TRINITY_DN64244_c0_g1_i1.p1, TRINITY_DN35234_c0_g1_i1.p1, TRINITY_DN24798_c0_g1_i2.p1, TRINITY_DN26038_c0_g1_i1.p1, TRINITY_DN85741_c0_g1_i1.p1, TRINITY_DN10384_c0_g1_i2.p1
Chironomus tentans CTENT g8187.t1
Chironomus dilutus CDILU TRINITY_DN25307_c0_g1_i1.p1, TRINITY_DN24312_c0_g1_i1.p2, TRINITY_DN17477_c0_g1_i1.p1, TRINITY_DN10492_c0_g1_i1.p1, TRINITY_DN508_c1_g1_i7.p1, TRINITY_DN10492_c1_g1_i1.p1
Polypedilum nubifer PNUBI Pn.06285
Polypedilum vanderplanki PVAND g5157.t2, g12034.t1
Polypedilum pembai PPEMB g14353.t1, g8605.t1
Culicoides sonorensis CSONO CSON005281-1, CSON011982-1, CSON000536-1
Aedes aegypti lvpagwg AAEGYL AAEL005656-PA, AAEL021838-PA, AAEL026217-PA
Anopheles gambiae AGAMB AGAP010147-PA

Gene tree

Expression profile for this gene

Gene-level expression profile

Raw TPM values

Expression profile of isoforms

A heatmap representing isoforms with TPM > 0 in at least one sample. Expression profiles were are clustered based on the spearman correlation