Gene loci information

Transcript annotation

  • This transcript has been annotated as Myosin heavy chain, muscle.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_2 g5157 g5157.t3 TTS g5157.t3 7331353 7331353
chr_2 g5157 g5157.t3 isoform g5157.t3 7331486 7351406
chr_2 g5157 g5157.t3 exon g5157.t3.exon1 7331486 7331539
chr_2 g5157 g5157.t3 cds g5157.t3.CDS1 7331486 7331539
chr_2 g5157 g5157.t3 exon g5157.t3.exon2 7332104 7334185
chr_2 g5157 g5157.t3 cds g5157.t3.CDS2 7332104 7334185
chr_2 g5157 g5157.t3 exon g5157.t3.exon3 7334476 7334554
chr_2 g5157 g5157.t3 cds g5157.t3.CDS3 7334476 7334554
chr_2 g5157 g5157.t3 exon g5157.t3.exon4 7334908 7335794
chr_2 g5157 g5157.t3 cds g5157.t3.CDS4 7334908 7335794
chr_2 g5157 g5157.t3 exon g5157.t3.exon5 7336096 7336305
chr_2 g5157 g5157.t3 cds g5157.t3.CDS5 7336096 7336305
chr_2 g5157 g5157.t3 exon g5157.t3.exon6 7337138 7337401
chr_2 g5157 g5157.t3 cds g5157.t3.CDS6 7337138 7337401
chr_2 g5157 g5157.t3 exon g5157.t3.exon7 7337600 7337717
chr_2 g5157 g5157.t3 cds g5157.t3.CDS7 7337600 7337717
chr_2 g5157 g5157.t3 exon g5157.t3.exon8 7340085 7340677
chr_2 g5157 g5157.t3 cds g5157.t3.CDS8 7340085 7340677
chr_2 g5157 g5157.t3 exon g5157.t3.exon9 7343414 7343584
chr_2 g5157 g5157.t3 cds g5157.t3.CDS9 7343414 7343584
chr_2 g5157 g5157.t3 exon g5157.t3.exon10 7344169 7344576
chr_2 g5157 g5157.t3 cds g5157.t3.CDS10 7344169 7344576
chr_2 g5157 g5157.t3 exon g5157.t3.exon11 7345295 7345348
chr_2 g5157 g5157.t3 cds g5157.t3.CDS11 7345295 7345348
chr_2 g5157 g5157.t3 exon g5157.t3.exon12 7345666 7345821
chr_2 g5157 g5157.t3 cds g5157.t3.CDS12 7345666 7345821
chr_2 g5157 g5157.t3 exon g5157.t3.exon13 7345998 7346051
chr_2 g5157 g5157.t3 cds g5157.t3.CDS13 7345998 7346051
chr_2 g5157 g5157.t3 exon g5157.t3.exon14 7346722 7346825
chr_2 g5157 g5157.t3 cds g5157.t3.CDS14 7346722 7346825
chr_2 g5157 g5157.t3 exon g5157.t3.exon15 7348795 7348957
chr_2 g5157 g5157.t3 cds g5157.t3.CDS15 7348795 7348957
chr_2 g5157 g5157.t3 exon g5157.t3.exon16 7349015 7349395
chr_2 g5157 g5157.t3 cds g5157.t3.CDS16 7349015 7349395
chr_2 g5157 g5157.t3 exon g5157.t3.exon17 7350463 7350606
chr_2 g5157 g5157.t3 cds g5157.t3.CDS17 7350463 7350606
chr_2 g5157 g5157.t3 exon g5157.t3.exon18 7351200 7351406
chr_2 g5157 g5157.t3 cds g5157.t3.CDS18 7351200 7351406
chr_2 g5157 g5157.t3 TSS g5157.t3 NA NA

Sequences

>g5157.t3 Gene=g5157 Length=6129
ATGCCAAAGGTTATCAAGCAAGAAGGTGAAGACCCAGATCCCTCACCATGGTTGTTCGTC
TCACTCGAACAAAAGCGTATCGATCAATCGAAACCATACGATGCCAAGAAAGCCTGCTGG
GTTCCAGATGAAAAGGAGGGCTACGTCTTGGGTGAAATTAAGTCAACCAAGGGAGACTTA
GTCACCGTTTCTGTTCCCGGTGGCGAGACTAAGGATTTAAAGAAAGACTTGGTTGCACAA
GTCAACCCTCCAAAGTACGAAAAATGCGAGGACATGTCTAACTTGACATACCTCAACGAT
GCCTCGGTTCTCCATAACTTGAGACAACGTTATCTTGCCAAACTTATCTACACCTACTCT
GGCCTCTTCTGTATTGTAATCAACCCTTACAAACGTTGGCCATTGTATACCAACCGCGTC
GCTAAAATGTACCGTGGAAAGCGTCGCGCTGAAATGCCACCTCATCTTTTCTCAATTTCT
GACGGTGCCTACGTCAACATGTTGACAGATCATGAAAATCAATCCATGTTGATTACTGGT
GAGTCAGGAGCAGGAAAAACTGAGAACACGAAGAAGGTTATTGCCTACTTCGCCACTATT
GGTGCATCAACCAAGAAATCCGAAAGTGACGAGAAGAAGGGATCACTTGAAGATCAAGTC
GTCCAAACCAATCCCGTACTTGAAGCTTTCGGTAACGCCAAGACCGTCCGTAATGATAAC
TCATCACGTTTCGGTAAATTCATCCGTATTCACTTCTCTGGATCGGGTAAATTGTCAGGT
GCTGATATTGAAACCTACTTGTTGGAGAAGGCTCGTGTCATCTCACAACAATCATTGGAA
CGTTCATATCACATCTTCTACCAAATGATGTCAGGCTCAGTTCCAGGTCTTAAAGACATG
TGTATTTTATCCAACAACATTATGGATTATCATATTGTATCCCAGGGCAAAACCACCATC
CCAAATGTTGATGATGGTGAAGAATGTGAACTTACTGATGGCAAGACAACAATTCCAAGT
GTTGATGATAGTGAAGAAATGCAATTAACCGATAATCGAGCTGTTAAAATAGTAAATAAT
AATGACAATGATAAATTAAATTTAGAAAAAACATTATTATCATCGCGAATGAGCGATTAT
CCGACAATAACACAAGGCAAAACACGTATTCCTGGCATTAATGATGGTGAAGAGTTTGAA
ATTACTGATGGAAAAATAACAATCCCTGGCATCGATGACGGTGAAGAATGTCAACTTGCT
GATCAAGCCTTCGATGTCTTGGGTTTCACACAAGAAGAGAAGGACAACATCTACAAGATT
GTCGCCGCTGTCATGCATATGGGTGCTATGCAATTCAAACAAAGAGGTCGCGAAGAACAG
GCTGAAGCTGATGGTACTGAAGCTGGTGAGAAAGTCGCCAAATTGCTCGGTGTTGACACA
CAAGATCTCTACAAGAACTTGCTTAAGCCACGTATTAAGGTCGGTAACGAGTTCGTCACA
CAAGGTCGTAACAAAGATCAAGTATACAACTCAGTTGGTGCCCTTTGCAAGGGTGTCTTC
GATCGTCTCTTCAAATGGCTCGTCAAGAAGTGTAACGAAACACTTGACACCAAGCAAAAA
CGTGTTCACTTCATTGGTGTGTTGGATATTGCTGGTTTCGAAATTTTCGACTACAACGGT
TTTGAACAATTGTGTATTAACTTCACCAATGAAAAATTGCAACAATTCTTTAACCATCAC
ATGTTCGTTCTTGAACAAGAGGAATATAAGAAAGAAGGTATCGACTGGGCTTTCATTGAT
TTCGGCATGGACTTGTTGGCTTGTATTGAGATGATTGAGAAGCCTATGGGTATCTTGTCA
ATTCTTGAAGAAGAATCTATGTTCCCAAAAGCTACTGATCAAACATTCGCTGAGAAATTG
ATGGTCAACCATTTGGGTAAATCAGCTCCATTCTTGAAGCCAAAACCACCAAAGCCAGGT
TGCCAAGCTGGTCACTTTGCTATTGCTCACTACGCTGGTGTTGTCACATATAACATCACC
GGTTGGTTGGAAAAGAACAAGGATCCATTGAATGACACAGTCGTCGATCAATTCAAGAAG
GGTGCCAATAATCTTTTGGTTGAAATCTTTGCTGATCATCCAGGTCAATCAGCACCAGCT
GATGCTGGCGGCAAGGGTGGTCGTGGTAAGAAAGGTGGTGGTTTCGCCACTGTCTCATCA
TCATACCGTGAACAGTTGAACAACTTGATGACAACATTGCGTTCAACACATCCTCATTTC
GTCCGTTGCATTATTCCAAATGAATTGAAACAGACTGGTCTCATCGATGCCAAGCTTGTT
ATGCATCAGCTCACTTGTAACGGTGTACTTGAAGGTATCCGTATCTGTCGTAAAGGTTTC
CCCAACAGAATGAACTATCCAGATTTCAAATTGCGATACAAAATTCTGTGCATCCATTTG
GTCAATGCTGAGCCAAAGGCTGAAAAAGCAGCATCCATTATCCTTGATCACCTCAAAATG
CCCGAAGAAAACTTCCGTTTGGGTAAAACCAAGGTCTTCTTCCGTGCTGGTGTCTTGGGT
CAAATGGAAGAATTCCGTGATGAACGTCTTAGCCGTATCATGTCATGGATGCAAGGTTGG
GCCCGTGGTTACCTTACACGTAAGGTCTTCAAGAAGTTGCAAGAACAACGTCTTGCCCTT
ACTGTCGTCCAACGTGCATTGCGCAGATACCTCAAGCTTCGCACTTGGCCATGGTGGAAA
TTGTGGCAAAAAGTCAAGCCACTCCTCAATGCCTCGCGTATTGAAGATCAAATTGCTAAA
CTTGAAGAGAAGGCACAAAAGGCCCAAGAAGCCTTCGAAAAGGAAGAGAAAGCTCGTAAG
GAATTGGAATCTCTTAATGCCAAATTGTTGGCTGAGAAGACAGCTCTTTTGGACTCATTG
TCTGGTGAGAAGGGTGCCCTTCAAGATTATCAAGAAAAGTGCGCCAAGATTCAAGCCCAA
AAGAACGATTTGGACAACCAATTGCGTGACACACAAGAGCGATTGGCTTCAGAAGAAGAT
GCCCGCAATCAATTGTTCCAAGCCAAAAAGAAGTGCGAACAAGAGATCGCTGGCTTGAAG
AAGGATTTGGAAGACTTGGAACTTTCAATCCAAAAATCAGAGCAAGACAAGTCATCAAAG
GATCACCAAATCCGCAATTTGAATGATGAAATCGCCCATCAGGATGAACTCATCAACAAA
TTGAACAAGGAAAAGAAAATGCAAGGTGAAACCAACCAAAAGACCGCCGAGGAATTGCAA
GCTGCTGAAGACAAAGTCAACCATTTGAACAAAGTCAAGGCCAAGCTTGAACAGACCCTC
GATGAATTGGAGGACTCACTTGAACGTGAGAAGAAACTCCGTGGTGATGTTGAAAAGAGC
AAACGTAAGGTTGAAGGTGACTTGAAACTCACACAAGAGGCTGTTGCTGATTTGGAACGC
AACAAGAAGGAACTTGAACAAACCATCCAACGTAAGGATAAGGAAATTTCATCACTCACC
GCCAAATTAGAAGATGAACAATCATTGGTTGGCAAATTGCAAAAACAAATCAAGGAACTT
CAATCACGCATTGAAGAACTCGAAGAAGAAGTTGAAGCTGAACGTCAAGCTCGTGCCAAG
GCTGAAAAACAACGTGCTGATTTGGCTCGTGAATTGGAAGAATTGGGTGAACGTCTTGAA
GAAGCCGGTGGTGCCACATCAGCTCAAATTGAGCTCAACAAGAAGCGTGAAGCTGAATTG
GCCAAATTGCGCCGTGATTTGGAAGAAGCCAACATTCAACATGAAGGCACATTGGCCAAC
TTACGCAAGAAGCACAATGATGCTGTCGCTGAGATGGCTGAACAAGTTGATCAACTCAAC
AAATTGAAGACCAAAGCTGAGAAGGAAAGATCACAATACTTCGGTGAAGTCAATGATCTC
CGCCACAGCCTCGACACAGTTGCTAACGAAAAGGCCGCACAAGAAAAGATTGCCAAGCAA
ATGCAACACACACTTAATGAAGTCCAAGGCAAATTAGATGAAACCAACCGCACATTGAAT
GACTTTGATGCACAAAAGAAGAAGTTGTCAATTGAAAACTCAGATCTCCTTCGTCAATTG
GAAGAGGCTGAATCACAAGTCTCACAATTGTCAAAGATCAAGATCTCACTCACACAACAA
TTGGAAGATACCAAGCGTCTTGCCGACGAGGAGGCTCGTGAACGTGCCACACTTTTGGGC
AAATTCCGCAACTTGGAACATGACTTGGATAACTTGCGTGAACAAGTTGAAGAAGAAGCT
GAAGGCAAAGCTGATATGCAACGTCAACTCAGCAAGGCCAACGCTGAAGCTCAATTGTGG
CGTGCCAAGTACGAGTCAGAGGGTGTTGCTCGCGCTGAAGAATTGGAAGAAGCCAAGCGC
AAGCTCCAAGCTCGTCTTGCCGAAGCAGAAGAAACAATCGAATCACTCAACCAAAAATGC
GTTGCATTGGAAAAGACCAAGCAACGTCTTGCCACAGAAGTCGAAGACTTGCAATTGGAA
GTCGACCGTGCCACAGCTATTGCCAACGCTGCCGAGAAGAAACAAAAGGCATTCGACAAA
ATTATTGGCGAATGGAAACTCAAGGTCGACGATCTCGCTGCCGAGCTTGATGCATCACAA
AAGGAATGCCGCAACTACTCAACCGAACTCTTCCGTCTCAAGGGAGCCTACGAAGAAGGA
CAAGAACAATTGGAAGCTGTCCGTCGTGAGAACAAGAATCTCGCTGATGAAGTTAAGGAC
TTGCTCGACCAAATCGGTGAGGGTGGTCGCAACATTCACGAAATCGAAAAGGCACGCAAA
CGTCTTGAAGTTGAGAAAGACGAATTGCAAGCCGCTCTTGAGGAAGCTGAAGCTGCCTTG
GAACAAGAAGAAAACAAGGTTCTCCGCGCTCAACTCGAATTGTCACAAGTTCGTCAAGAA
ATCGACAGACGCATCCAAGAGAAGGAGGAAGAATTCGAAAACACACGCAAGAATCACCAA
CGTGCACTCGACTCAATGCAAGCTTCACTCGAAGCCGAGGCTAAGGGTAAGGCTGAGGCT
CTTCGCATGAAGAAGAAGTTGGAAGCTGACATCAATGAACTCGAAATTGCTTTGGATCAC
GCCAACAAGGCCAACGCTGAAGCACAGAAGAACATCAAACGCTACCAACAACAACTCAAA
GACTTGCAAACCGCCCTCGAAGAAGAACAACGTGCACGTGATGATGCTCGTGAACAACTT
GGAATCTCAGAACGCCGTGCCAATGCCCTTCAAAACGAATTGGAGGAATCACGTACACTT
TTGGAACAAGCTGACCGCGGCCGTCGTCAAGCTGAGCAAGAATTGGGTGATGCTCATGAG
CAACTCAACGAACTCTCAGCCCAAAACGCCTCAGTCGCTGCTGCCAAGAGAAAGTTGGAA
GCCGAATTACAAACACTCCACTCAGACTTGGATGAATTGTTGAATGAAGCCAAGAACTCA
GAAGAGAAGGCCAAGAAGGCAATGGTTGATGCTGCCCGTCTTGCTGATGAACTTCGTGCT
GAACAAGACCATGCACAAACACAAGAGAAATTACGCAAGGCCCTTGAAACTCAAATCAAG
GAATTGCAAGTTCGCTTGGATGAAGCTGAACAAAACGCACTCAAGGGAGGCAAGAAAGCC
ATCCAAAAACTCGAACAACGCGTCCGCGAATTGGAGAATGAATTGGACGGTGAACAACGC
AGACATGCTGATGCCCAAAAGAACCTCCGCAAGGGCGAACGTCGCATTAAGGAATTGAGC
TTCCAATCAGAAGAAGACCGCAAGAACCACGAACGTATGCAAGACTTGGTTGACAAACTC
CAACAAAAGATCAAGACATACAAGAGACAAATTGAGGAAGCTGAAGAAATTGCTGCCCTC
AACTTGGCCAAATTCCGTAAGGCACAACAAGAATTGGAAGAGTCAGAAGAACGCGCTGAC
TTGGCCGAACAAGCAATCAGCAAATTCAGAGCAAAGGGACGTGGCGGTTCAGTCGCACGC
GGTGCCAGCCCAGTGCCCCAAAGACCAAACCGCCCATTGGCTGATGGATTGTTCGGATTT
GACGAATAA

>g5157.t3 Gene=g5157 Length=2042
MPKVIKQEGEDPDPSPWLFVSLEQKRIDQSKPYDAKKACWVPDEKEGYVLGEIKSTKGDL
VTVSVPGGETKDLKKDLVAQVNPPKYEKCEDMSNLTYLNDASVLHNLRQRYLAKLIYTYS
GLFCIVINPYKRWPLYTNRVAKMYRGKRRAEMPPHLFSISDGAYVNMLTDHENQSMLITG
ESGAGKTENTKKVIAYFATIGASTKKSESDEKKGSLEDQVVQTNPVLEAFGNAKTVRNDN
SSRFGKFIRIHFSGSGKLSGADIETYLLEKARVISQQSLERSYHIFYQMMSGSVPGLKDM
CILSNNIMDYHIVSQGKTTIPNVDDGEECELTDGKTTIPSVDDSEEMQLTDNRAVKIVNN
NDNDKLNLEKTLLSSRMSDYPTITQGKTRIPGINDGEEFEITDGKITIPGIDDGEECQLA
DQAFDVLGFTQEEKDNIYKIVAAVMHMGAMQFKQRGREEQAEADGTEAGEKVAKLLGVDT
QDLYKNLLKPRIKVGNEFVTQGRNKDQVYNSVGALCKGVFDRLFKWLVKKCNETLDTKQK
RVHFIGVLDIAGFEIFDYNGFEQLCINFTNEKLQQFFNHHMFVLEQEEYKKEGIDWAFID
FGMDLLACIEMIEKPMGILSILEEESMFPKATDQTFAEKLMVNHLGKSAPFLKPKPPKPG
CQAGHFAIAHYAGVVTYNITGWLEKNKDPLNDTVVDQFKKGANNLLVEIFADHPGQSAPA
DAGGKGGRGKKGGGFATVSSSYREQLNNLMTTLRSTHPHFVRCIIPNELKQTGLIDAKLV
MHQLTCNGVLEGIRICRKGFPNRMNYPDFKLRYKILCIHLVNAEPKAEKAASIILDHLKM
PEENFRLGKTKVFFRAGVLGQMEEFRDERLSRIMSWMQGWARGYLTRKVFKKLQEQRLAL
TVVQRALRRYLKLRTWPWWKLWQKVKPLLNASRIEDQIAKLEEKAQKAQEAFEKEEKARK
ELESLNAKLLAEKTALLDSLSGEKGALQDYQEKCAKIQAQKNDLDNQLRDTQERLASEED
ARNQLFQAKKKCEQEIAGLKKDLEDLELSIQKSEQDKSSKDHQIRNLNDEIAHQDELINK
LNKEKKMQGETNQKTAEELQAAEDKVNHLNKVKAKLEQTLDELEDSLEREKKLRGDVEKS
KRKVEGDLKLTQEAVADLERNKKELEQTIQRKDKEISSLTAKLEDEQSLVGKLQKQIKEL
QSRIEELEEEVEAERQARAKAEKQRADLARELEELGERLEEAGGATSAQIELNKKREAEL
AKLRRDLEEANIQHEGTLANLRKKHNDAVAEMAEQVDQLNKLKTKAEKERSQYFGEVNDL
RHSLDTVANEKAAQEKIAKQMQHTLNEVQGKLDETNRTLNDFDAQKKKLSIENSDLLRQL
EEAESQVSQLSKIKISLTQQLEDTKRLADEEARERATLLGKFRNLEHDLDNLREQVEEEA
EGKADMQRQLSKANAEAQLWRAKYESEGVARAEELEEAKRKLQARLAEAEETIESLNQKC
VALEKTKQRLATEVEDLQLEVDRATAIANAAEKKQKAFDKIIGEWKLKVDDLAAELDASQ
KECRNYSTELFRLKGAYEEGQEQLEAVRRENKNLADEVKDLLDQIGEGGRNIHEIEKARK
RLEVEKDELQAALEEAEAALEQEENKVLRAQLELSQVRQEIDRRIQEKEEEFENTRKNHQ
RALDSMQASLEAEAKGKAEALRMKKKLEADINELEIALDHANKANAEAQKNIKRYQQQLK
DLQTALEEEQRARDDAREQLGISERRANALQNELEESRTLLEQADRGRRQAEQELGDAHE
QLNELSAQNASVAAAKRKLEAELQTLHSDLDELLNEAKNSEEKAKKAMVDAARLADELRA
EQDHAQTQEKLRKALETQIKELQVRLDEAEQNALKGGKKAIQKLEQRVRELENELDGEQR
RHADAQKNLRKGERRIKELSFQSEEDRKNHERMQDLVDKLQQKIKTYKRQIEEAEEIAAL
NLAKFRKAQQELEESEERADLAEQAISKFRAKGRGGSVARGASPVPQRPNRPLADGLFGF
DE

Protein features from InterProScan

Transcript Database ID Name Start End E.value
43 g5157.t3 CDD cd14909 MYSc_Myh1_insects_crustaceans 101 855 0.0
37 g5157.t3 Coils Coil Coil 931 975 -
38 g5157.t3 Coils Coil Coil 987 1084 -
35 g5157.t3 Coils Coil Coil 1092 1245 -
36 g5157.t3 Coils Coil Coil 1253 1312 -
40 g5157.t3 Coils Coil Coil 1338 1463 -
39 g5157.t3 Coils Coil Coil 1472 1534 -
42 g5157.t3 Coils Coil Coil 1542 1604 -
41 g5157.t3 Coils Coil Coil 1612 1689 -
34 g5157.t3 Coils Coil Coil 1697 2012 -
24 g5157.t3 Gene3D G3DSA:2.30.30.360 Myosin S1 fragment 32 82 1.8E-21
31 g5157.t3 Gene3D G3DSA:3.40.850.10 Kinesin 83 318 2.6E-94
27 g5157.t3 Gene3D G3DSA:1.10.10.820 - 356 402 2.3E-6
26 g5157.t3 Gene3D G3DSA:1.10.10.820 - 403 428 2.0E-5
25 g5157.t3 Gene3D G3DSA:1.20.120.720 - 430 554 2.3E-43
33 g5157.t3 Gene3D G3DSA:1.20.58.530 - 555 711 1.7E-62
30 g5157.t3 Gene3D G3DSA:3.40.850.10 Kinesin 734 799 8.5E-14
21 g5157.t3 Gene3D G3DSA:3.30.70.3240 - 800 867 1.2E-21
23 g5157.t3 Gene3D G3DSA:4.10.270.10 Myosin 868 926 3.9E-23
32 g5157.t3 Gene3D G3DSA:1.20.5.340 - 927 1052 7.9E-31
22 g5157.t3 Gene3D G3DSA:1.20.5.1050 - 1054 1163 6.7E-6
29 g5157.t3 Gene3D G3DSA:1.20.5.370 - 1626 1663 2.6E-7
28 g5157.t3 Gene3D G3DSA:1.20.5.370 - 1664 1711 3.0E-11
45 g5157.t3 MobiDBLite mobidb-lite consensus disorder prediction 1913 1952 -
46 g5157.t3 MobiDBLite mobidb-lite consensus disorder prediction 2012 2042 -
5 g5157.t3 PANTHER PTHR45615:SF12 MYOSIN-4 17 347 0.0
7 g5157.t3 PANTHER PTHR45615 MYOSIN HEAVY CHAIN, NON-MUSCLE 17 347 0.0
6 g5157.t3 PANTHER PTHR45615:SF12 MYOSIN-4 403 1999 0.0
8 g5157.t3 PANTHER PTHR45615 MYOSIN HEAVY CHAIN, NON-MUSCLE 403 1999 0.0
9 g5157.t3 PRINTS PR00193 Myosin heavy chain signature 117 136 1.0E-66
13 g5157.t3 PRINTS PR00193 Myosin heavy chain signature 173 198 1.0E-66
11 g5157.t3 PRINTS PR00193 Myosin heavy chain signature 225 252 1.0E-66
12 g5157.t3 PRINTS PR00193 Myosin heavy chain signature 544 572 1.0E-66
10 g5157.t3 PRINTS PR00193 Myosin heavy chain signature 598 626 1.0E-66
4 g5157.t3 Pfam PF02736 Myosin N-terminal SH3-like domain 36 75 1.8E-13
1 g5157.t3 Pfam PF00063 Myosin head (motor domain) 90 349 7.8E-107
2 g5157.t3 Pfam PF00063 Myosin head (motor domain) 402 855 1.6E-167
3 g5157.t3 Pfam PF01576 Myosin tail 933 2012 1.4E-165
49 g5157.t3 ProSiteProfiles PS51844 Myosin N-terminal SH3-like domain profile. 34 83 18.222
47 g5157.t3 ProSiteProfiles PS51456 Myosin motor domain profile. 87 867 247.645
48 g5157.t3 ProSiteProfiles PS50096 IQ motif profile. 870 899 7.84
44 g5157.t3 SMART SM00242 MYSc_2a 81 868 0.0
20 g5157.t3 SUPERFAMILY SSF52540 P-loop containing nucleoside triphosphate hydrolases 39 929 1.06E-275
17 g5157.t3 SUPERFAMILY SSF90257 Myosin rod fragments 927 1052 2.22E-22
14 g5157.t3 SUPERFAMILY SSF90257 Myosin rod fragments 1049 1160 5.1E-22
18 g5157.t3 SUPERFAMILY SSF90257 Myosin rod fragments 1155 1271 2.88E-6
15 g5157.t3 SUPERFAMILY SSF90257 Myosin rod fragments 1325 1439 6.93E-24
16 g5157.t3 SUPERFAMILY SSF90257 Myosin rod fragments 1519 1640 2.54E-10
19 g5157.t3 SUPERFAMILY SSF90257 Myosin rod fragments 1718 1833 6.02E-9

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

Data is missing for g5157/g5157.t3; file /home/yuki.yoshida/nias/analysis/reanalysis/18_revice/midgebase/iupred3/g5157.t3.fa.iupred3.txt does not exist

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0051015 actin filament binding MF
GO:0005524 ATP binding MF
GO:0005515 protein binding MF
GO:0016459 myosin complex CC
GO:0003774 cytoskeletal motor activity MF

KEGG

Orthology

Pathway

  • This transcript belongs to the following pathways

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed