General information for g5157.t7
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Myosin heavy chain, muscle.
Parent gene
- The parent gene g5157 is located on chr_2: 7349389..7353465 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_2 | g5157 | g5157.t7 | isoform | g5157.t7 | 7338954 | 7351406 |
| chr_2 | g5157 | g5157.t7 | exon | g5157.t7.exon1 | 7338954 | 7339077 |
| chr_2 | g5157 | g5157.t7 | cds | g5157.t7.CDS1 | 7338954 | 7339077 |
| chr_2 | g5157 | g5157.t7 | exon | g5157.t7.exon2 | 7340085 | 7340677 |
| chr_2 | g5157 | g5157.t7 | cds | g5157.t7.CDS2 | 7340085 | 7340677 |
| chr_2 | g5157 | g5157.t7 | exon | g5157.t7.exon3 | 7343414 | 7343584 |
| chr_2 | g5157 | g5157.t7 | cds | g5157.t7.CDS3 | 7343414 | 7343584 |
| chr_2 | g5157 | g5157.t7 | exon | g5157.t7.exon4 | 7344169 | 7344576 |
| chr_2 | g5157 | g5157.t7 | cds | g5157.t7.CDS4 | 7344169 | 7344576 |
| chr_2 | g5157 | g5157.t7 | exon | g5157.t7.exon5 | 7345295 | 7345348 |
| chr_2 | g5157 | g5157.t7 | cds | g5157.t7.CDS5 | 7345295 | 7345348 |
| chr_2 | g5157 | g5157.t7 | exon | g5157.t7.exon6 | 7345666 | 7345821 |
| chr_2 | g5157 | g5157.t7 | cds | g5157.t7.CDS6 | 7345666 | 7345821 |
| chr_2 | g5157 | g5157.t7 | exon | g5157.t7.exon7 | 7345998 | 7346051 |
| chr_2 | g5157 | g5157.t7 | cds | g5157.t7.CDS7 | 7345998 | 7346051 |
| chr_2 | g5157 | g5157.t7 | exon | g5157.t7.exon8 | 7346722 | 7346825 |
| chr_2 | g5157 | g5157.t7 | cds | g5157.t7.CDS8 | 7346722 | 7346825 |
| chr_2 | g5157 | g5157.t7 | exon | g5157.t7.exon9 | 7348795 | 7348957 |
| chr_2 | g5157 | g5157.t7 | cds | g5157.t7.CDS9 | 7348795 | 7348957 |
| chr_2 | g5157 | g5157.t7 | exon | g5157.t7.exon10 | 7349015 | 7349395 |
| chr_2 | g5157 | g5157.t7 | cds | g5157.t7.CDS10 | 7349015 | 7349395 |
| chr_2 | g5157 | g5157.t7 | exon | g5157.t7.exon11 | 7350463 | 7350606 |
| chr_2 | g5157 | g5157.t7 | cds | g5157.t7.CDS11 | 7350463 | 7350606 |
| chr_2 | g5157 | g5157.t7 | exon | g5157.t7.exon12 | 7350925 | 7351068 |
| chr_2 | g5157 | g5157.t7 | cds | g5157.t7.CDS12 | 7350925 | 7351068 |
| chr_2 | g5157 | g5157.t7 | exon | g5157.t7.exon13 | 7351200 | 7351406 |
| chr_2 | g5157 | g5157.t7 | cds | g5157.t7.CDS13 | 7351200 | 7351406 |
| chr_2 | g5157 | g5157.t7 | TSS | g5157.t7 | NA | NA |
| chr_2 | g5157 | g5157.t7 | TTS | g5157.t7 | NA | NA |
Sequences
>g5157.t7 Gene=g5157 Length=2703
ATGCCAAAGGTTATCAAGCAAGAAGGTGAAGACCCAGATCCCTCACCATGGTTGTTCGTC
TCACTCGAACAAAAGCGTATCGATCAATCGAAACCATACGATGCCAAGAAAGCCTGCTGG
GTTCCAGATGAAAAGGAGGGCTACGTCTTGGGTGAAATTAAGTCAACCAAGGGAGACTTA
GTCACCGTTTCTGTTCCCGGTGGCGAGGAACGAAATCTGAAACGTGATTTGATTCATCCA
GTCAATCCACCAAAATTCGAAAAAGTCGAGGATATGGCCGATTTGACCCATCTTAATGAA
GGTGCCGTGTTGCATAATCTGCGTCAGCGGTACTATTCTCGACTCATCTATACTAAGGAT
TTAAAGAAAGACTTGGTTGCACAAGTCAACCCTCCAAAGTACGAAAAATGCGAGGACATG
TCTAACTTGACATACCTCAACGATGCCTCGGTTCTCCATAACTTGAGACAACGTTATCTT
GCCAAACTTATCTACACCTACTCTGGCCTCTTCTGTATTGTAATCAACCCTTACAAACGT
TGGCCATTGTATACCAACCGCGTCGCTAAAATGTACCGTGGAAAGCGTCGCGCTGAAATG
CCACCTCATCTTTTCTCAATTTCTGACGGTGCCTACGTCAACATGTTGACAGATCATGAA
AATCAATCCATGTTGATTACTGGTGAGTCAGGAGCAGGAAAAACTGAGAACACGAAGAAG
GTTATTGCCTACTTCGCCACTATTGGTGCATCAACCAAGAAATCCGAAAGTGACGAGAAG
AAGGGATCACTTGAAGATCAAGTCGTCCAAACCAATCCCGTACTTGAAGCTTTCGGTAAC
GCCAAGACCGTCCGTAATGATAACTCATCACGTTTCGGTAAATTCATCCGTATTCACTTC
TCTGGATCGGGTAAATTGTCAGGTGCTGATATTGAAACCTACTTGTTGGAGAAGGCTCGT
GTCATCTCACAACAATCATTGGAACGTTCATATCACATCTTCTACCAAATGATGTCAGGC
TCAGTTCCAGGTCTTAAAGACATGTGTATTTTATCCAACAACATTATGGATTATCATATT
GTATCCCAGGGCAAAACCACCATCCCAAATGTTGATGATGGTGAAGAATGTGAACTTACT
GATGGCAAGACAACAATTCCAAGTGTTGATGATAGTGAAGAAATGCAATTAACCGATAAT
CGAGCTGTTAAAATAGTAAATAATAATGACAATGATAAATTAAATTTAGAAAAAACATTA
TTATCATCGCGAATGAGCGATTATCCGACAATAACACAAGGCAAAACACGTATTCCTGGC
ATTAATGATGGTGAAGAGTTTGAAATTACTGATGGAAAAATAACAATCCCTGGCATCGAT
GACGGTGAAGAATGTCAACTTGCTGATCAAGCCTTCGATGTCTTGGGTTTCACACAAGAA
GAGAAGGACAACATCTACAAGATTGTCGCCGCTGTCATGCATATGGGTGCTATGCAATTC
AAACAAAGAGGTCGCGAAGAACAGGCTGAAGCTGATGGTACTGAAGCTGGTGAGAAAGTC
GCCAAATTGCTCGGTGTTGACACACAAGATCTCTACAAGAACTTGCTTAAGCCACGTATT
AAGGTCGGTAACGAGTTCGTCACACAAGGTCGTAACAAAGATCAAGTATACAACTCAGTT
GGTGCCCTTTGCAAGGGTGTCTTCGATCGTCTCTTCAAATGGCTCGTCAAGAAGTGTAAC
GAAACACTTGACACCAAGCAAAAACGTGTTCACTTCATTGGTGTGTTGGATATTGCTGGT
TTCGAAATTTTCGACTACAACGGTTTTGAACAATTGTGTATTAACTTCACCAATGAAAAA
TTGCAACAATTCTTTAACCATCACATGTTCGTTCTTGAACAAGAGGAATATAAGAAAGAA
GGTATCGACTGGGCTTTCATTGATTTCGGCATGGACTTGTTGGCTTGTATTGAGATGATT
GAGAAGCCTATGGGTATCTTGTCAATTCTTGAAGAAGAATCTATGTTCCCAAAAGCTACT
GATCAAACATTCGCTGAGAAATTGATGGTCAACCATTTGGGTAAATCAGCTCCATTCTTG
AAGCCAAAACCACCAAAGCCAGGTTGCCAAGCTGGTCACTTTGCTATTGCTCACTACGCT
GGTGTTGTCACATATAACATCACCGGTTGGTTGGAAAAGAACAAGGATCCATTGAATGAC
ACAGTCGTCGATCAATTCAAGAAGGGTGCCAATAATCTTTTGGTTGAAATCTTTGCTGAT
CATCCAGGTCAATCAGCACCAGCTGATGCTGGCGGCAAGGGTGGTCGTGGTAAGAAAGGT
GGTGGTTTCGCCACTGTCTCATCATCATACCGTGAACAGTTGAACAACTTGATGACAACA
TTGCGTTCAACACATCCTCATTTCGTCCGTTGCATTATTCCAAATGAATTGAAACAGACT
GGTCTCATCGATGCCAAGCTTGTTATGCATCAGCTCACTTGTAACGGTGTACTTGAAGGT
ATCCGTATCTGTCGTAAAGGTTTCCCCAACAGAATGAACTATCCAGATTTCAAATTGCGT
TACCAAATTCTTGCACCTGCACTCATGCAAGCTGAAAAAGACCCTAAGAAGGCAGCAGCC
GCATGTTTGGACGCAATTAAATTGGATCCAGAAAGTTTCCGATTGGGTCATACTAAGGTC
TAG
>g5157.t7 Gene=g5157 Length=900
MPKVIKQEGEDPDPSPWLFVSLEQKRIDQSKPYDAKKACWVPDEKEGYVLGEIKSTKGDL
VTVSVPGGEERNLKRDLIHPVNPPKFEKVEDMADLTHLNEGAVLHNLRQRYYSRLIYTKD
LKKDLVAQVNPPKYEKCEDMSNLTYLNDASVLHNLRQRYLAKLIYTYSGLFCIVINPYKR
WPLYTNRVAKMYRGKRRAEMPPHLFSISDGAYVNMLTDHENQSMLITGESGAGKTENTKK
VIAYFATIGASTKKSESDEKKGSLEDQVVQTNPVLEAFGNAKTVRNDNSSRFGKFIRIHF
SGSGKLSGADIETYLLEKARVISQQSLERSYHIFYQMMSGSVPGLKDMCILSNNIMDYHI
VSQGKTTIPNVDDGEECELTDGKTTIPSVDDSEEMQLTDNRAVKIVNNNDNDKLNLEKTL
LSSRMSDYPTITQGKTRIPGINDGEEFEITDGKITIPGIDDGEECQLADQAFDVLGFTQE
EKDNIYKIVAAVMHMGAMQFKQRGREEQAEADGTEAGEKVAKLLGVDTQDLYKNLLKPRI
KVGNEFVTQGRNKDQVYNSVGALCKGVFDRLFKWLVKKCNETLDTKQKRVHFIGVLDIAG
FEIFDYNGFEQLCINFTNEKLQQFFNHHMFVLEQEEYKKEGIDWAFIDFGMDLLACIEMI
EKPMGILSILEEESMFPKATDQTFAEKLMVNHLGKSAPFLKPKPPKPGCQAGHFAIAHYA
GVVTYNITGWLEKNKDPLNDTVVDQFKKGANNLLVEIFADHPGQSAPADAGGKGGRGKKG
GGFATVSSSYREQLNNLMTTLRSTHPHFVRCIIPNELKQTGLIDAKLVMHQLTCNGVLEG
IRICRKGFPNRMNYPDFKLRYQILAPALMQAEKDPKKAAAACLDAIKLDPESFRLGHTKV
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 25 | g5157.t7 | CDD | cd14909 | MYSc_Myh1_insects_crustaceans | 149 | 900 | 0.0000000 |
| 23 | g5157.t7 | Gene3D | G3DSA:2.30.30.360 | Myosin S1 fragment | 32 | 82 | 0.0000000 |
| 19 | g5157.t7 | Gene3D | G3DSA:3.40.850.10 | Kinesin | 83 | 123 | 0.0000000 |
| 20 | g5157.t7 | Gene3D | G3DSA:3.40.850.10 | Kinesin | 124 | 423 | 0.0000000 |
| 18 | g5157.t7 | Gene3D | G3DSA:1.10.10.820 | - | 449 | 476 | 0.0000082 |
| 17 | g5157.t7 | Gene3D | G3DSA:1.20.120.720 | - | 478 | 602 | 0.0000000 |
| 24 | g5157.t7 | Gene3D | G3DSA:1.20.58.530 | - | 603 | 759 | 0.0000000 |
| 21 | g5157.t7 | Gene3D | G3DSA:3.40.850.10 | Kinesin | 782 | 847 | 0.0000000 |
| 22 | g5157.t7 | Gene3D | G3DSA:1.20.58.1940 | - | 848 | 900 | 0.0000000 |
| 5 | g5157.t7 | PANTHER | PTHR45615:SF27 | MYOSIN HEAVY CHAIN, MUSCLE | 1 | 118 | 0.0000000 |
| 8 | g5157.t7 | PANTHER | PTHR45615 | MYOSIN HEAVY CHAIN, NON-MUSCLE | 1 | 118 | 0.0000000 |
| 6 | g5157.t7 | PANTHER | PTHR45615:SF27 | MYOSIN HEAVY CHAIN, MUSCLE | 119 | 381 | 0.0000000 |
| 9 | g5157.t7 | PANTHER | PTHR45615 | MYOSIN HEAVY CHAIN, NON-MUSCLE | 119 | 381 | 0.0000000 |
| 4 | g5157.t7 | PANTHER | PTHR45615:SF27 | MYOSIN HEAVY CHAIN, MUSCLE | 450 | 900 | 0.0000000 |
| 7 | g5157.t7 | PANTHER | PTHR45615 | MYOSIN HEAVY CHAIN, NON-MUSCLE | 450 | 900 | 0.0000000 |
| 10 | g5157.t7 | PRINTS | PR00193 | Myosin heavy chain signature | 165 | 184 | 0.0000000 |
| 11 | g5157.t7 | PRINTS | PR00193 | Myosin heavy chain signature | 221 | 246 | 0.0000000 |
| 14 | g5157.t7 | PRINTS | PR00193 | Myosin heavy chain signature | 273 | 300 | 0.0000000 |
| 13 | g5157.t7 | PRINTS | PR00193 | Myosin heavy chain signature | 592 | 620 | 0.0000000 |
| 12 | g5157.t7 | PRINTS | PR00193 | Myosin heavy chain signature | 646 | 674 | 0.0000000 |
| 3 | g5157.t7 | Pfam | PF02736 | Myosin N-terminal SH3-like domain | 36 | 74 | 0.0000000 |
| 2 | g5157.t7 | Pfam | PF00063 | Myosin head (motor domain) | 138 | 397 | 0.0000000 |
| 1 | g5157.t7 | Pfam | PF00063 | Myosin head (motor domain) | 450 | 900 | 0.0000000 |
| 28 | g5157.t7 | ProSiteProfiles | PS51844 | Myosin N-terminal SH3-like domain profile. | 34 | 83 | 18.5710000 |
| 27 | g5157.t7 | ProSiteProfiles | PS51456 | Myosin motor domain profile. | 135 | 900 | 241.2780000 |
| 26 | g5157.t7 | SMART | SM00242 | MYSc_2a | 129 | 900 | 0.0000000 |
| 15 | g5157.t7 | SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 39 | 118 | 0.0000000 |
| 16 | g5157.t7 | SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 130 | 900 | 0.0000000 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
Data is missing for g5157/g5157.t7; file /home/yuki.yoshida/nias/analysis/reanalysis/18_revice/midgebase/iupred3/g5157.t7.fa.iupred3.txt does not exist
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0051015 | actin filament binding | MF |
| GO:0005524 | ATP binding | MF |
| GO:0016459 | myosin complex | CC |
| GO:0003774 | cytoskeletal motor activity | MF |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed