General information for g5157.t11
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Putative Myosin heavy chain, muscle.
Parent gene
- The parent gene g5157 is located on chr_2: 7349389..7353465 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_2 | g5157 | g5157.t11 | isoform | g5157.t11 | 7330475 | 7332415 |
| chr_2 | g5157 | g5157.t11 | exon | g5157.t11.exon1 | 7330475 | 7331539 |
| chr_2 | g5157 | g5157.t11 | TTS | g5157.t11 | 7330483 | 7330483 |
| chr_2 | g5157 | g5157.t11 | cds | g5157.t11.CDS1 | 7331486 | 7331539 |
| chr_2 | g5157 | g5157.t11 | exon | g5157.t11.exon2 | 7332107 | 7332415 |
| chr_2 | g5157 | g5157.t11 | cds | g5157.t11.CDS2 | 7332107 | 7332322 |
| chr_2 | g5157 | g5157.t11 | TSS | g5157.t11 | NA | NA |
Sequences
>g5157.t11 Gene=g5157 Length=1374
CATGCTGATGCCCAAAAGAACCTCCGCAAGGGCGAACGTCGCATTAAGGAATTGAGCTTC
CAATCAGAAGAAGACCGCAAGAACCACGAACGTATGCAAGACTTGGTTGACAAACTCCAA
CAAAAGATCAAGACATACAAGAGACAAATTGAGGAAGCTGAAGAAATTGCTGCCCTCAAC
TTGGCCAAATTCCGTAAGGCACAACAAGAATTGGAAGAGTCAGAAGAACGCGCTGACTTG
GCCGAACAAGCAATCAGCAAATTCAGAGCAAAGGGACGTGGCGGTTCAGTCGCACGCGGT
GCCAGCCCACCCCAAAGACCAAACCGCCCATTGGCTGATGGATTGTTCGGATTTGACGAA
TAAACAACAACAACAAAATCATGTTACGACCTCGCTACACGACCTAACAAATGAAAAACT
GAAAACTACTGACTTTTTTAAGTTTCTTATTCCTTTTTATTTTCATTTATGATTTTTCGT
TATATTTCAATTTCACAAAAAAAAGAGAAAAAAAAGAATTTTTTATAATGAACAACCAAA
ATGCAAAATGATTTTTTTTTGTAATAAATCAAGTAAAAATTCCATCAAAAATTTTTCATC
AGATCAAAATCAAATTTTATTGAATTTATCACACAATAACAGCAAAGGAGAAATATGCTT
TTTATTATTTATCAAAACCTTTCATATGAGAGAAATTTTATTTATTTTTAAAAAAGAATT
AAAAATTGCGCCGATGTACTAAGTTTAAAAAAGCTATTAAGAAATAATTTTTTTGCACAC
TTTTTTCCTTCCCTTTAATAAGGATTGATAAAAGTTGCTTATTGTATTTATTTTCTTTGT
TCTTTTTTCGTAATTTTAATTAATAAAAAAAGATTTAATTTAATATTGCCCTTTGATTAA
ATTCGGATAAAAATTAACAACAACAAATTTGATGAAAAATTCTCTAAGAAATTTTGAGAG
AAAATCGGATGAAAATGCTTGAAAATTAGAAAGAATTATTAATGAAAAAGAGAAATAAAC
TATTTACGCGACGGAAGGTCAAAACCGAAGAAATGTGGTTTAAAATAGAGACACACAAAA
AGCAAGAAATTATGAGACACGTTTTACCATCTTTTTATTCAGCCCACAATTTCATCAAAT
GACATCTTTGATTTTCATAAGCGAAAAGTTCATTTTTAGTTATTTTTCATGATTCTTTCT
TAATTTCACATTTATTCCAACGAAAAATTTCTGACTCTCAAAATTTTTTATTTTATCCGA
ATTTAACAATCGAGAAAAAAAGTATGTGTGAACCATTGAAGATCAAAACATCTAATTATA
CAAAGAAAAAGTAAAATAAAATCTTATATTAATAAAATCATTAAAGAAAATTTT
>g5157.t11 Gene=g5157 Length=89
MQDLVDKLQQKIKTYKRQIEEAEEIAALNLAKFRKAQQELEESEERADLAEQAISKFRAK
GRGGSVARGASPPQRPNRPLADGLFGFDE
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 4 | g5157.t11 | Coils | Coil | Coil | 5 | 60 | - |
| 3 | g5157.t11 | MobiDBLite | mobidb-lite | consensus disorder prediction | 60 | 89 | - |
| 1 | g5157.t11 | PANTHER | PTHR22988 | MYOTONIC DYSTROPHY S/T KINASE-RELATED | 1 | 84 | 2.4E-32 |
| 2 | g5157.t11 | PANTHER | PTHR22988:SF58 | PARAMYOSIN, LONG FORM | 1 | 84 | 2.4E-32 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
Data is missing for g5157/g5157.t11; file /home/yuki.yoshida/nias/analysis/reanalysis/18_revice/midgebase/iupred3/g5157.t11.fa.iupred3.txt does not exist
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed