Gene loci information

Isoforms of this gene

  • There are 9 isoforms that are expressed from this gene.
  • The longest transcript is g5974.t1
  • List of isoforms

g5974.t1, g5974.t2, g5974.t3, g5974.t4, g5974.t5, g5974.t6, g5974.t7, g5974.t8, g5974.t9

The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively.

KEGG

Orthology

Pathway

  • This gene belongs to the following 1 pathways
ko04136
ko04138
ko04140

Gene conservation patterns

Diptera wide analysis

The Orthogroup for the longest transcript (g5974.t1) is OG0006599. Other genes in this orthogroup contains the following. This list is ordered by phylogeny determined by OrthoFinder analysis. Genes from ENSEMBL are linked to their corresponding pages. For P. nubifer and P. vanderplanki, they are linked to the Midgebase1 and Midgebase2 pages.

Conservation

Organism Abb. ID No. Orthologs Ortholog ID
Atta cephalotes ACEPH 1 XP_012059732.1
Apis mellifera AMELL 1 GB51115-PA
Culicoides sonorensis CSONO 1 CSON005460-1
Polypedilum nubifer PNUBI 1 Pn.08612
Polypedilum vanderplanki PVAND 1 g5974.t1
Polypedilum pembai PPEMB 1 g8487.t1
Belgica antarctica BANTA 1 IU25_06192-mRNA-1
Clunio marinus CMARI 1 CRL00807.1
Aedes aegypti lvpagwg AAEGYL 1 AAEL014187-PA
Culex quinquefasciatus quinquefasciatus CQUINQ 1 EDS33881.1
Culex quinquefasciatus CQUIN 1 CPIJ001893-PA
Anopheles atroparvus AATRO 1 AATE013003-PA
Anopheles sinensis china ASINEC 1 ASIC005737-PA
Anopheles dirus ADIRU 1 ADIR004881-PA
Anopheles farauti AFARA 1 AFAF017417-PA
Anopheles epiroticus AEPIR 1 AEPI002167-PA
Anopheles christyi ACHRI 1 ACHR002982-PA
Anopheles merus AMERU 1 AMEM012780-PA
Anopheles melas AMELA 1 AMEC014668-PA
Anopheles arabiensis AARAB 1 AARA010806-PA
Anopheles coluzzii ACOLU 0 none
Anopheles coluzzii ngousso ACOLUN 1 ACON008797-PA
Anopheles gambiae AGAMB 1 AGAP008797-PA
Anopheles quadriannulatus AQUAD 1 AQUA005257-PA
Anopheles minimus AMINI 1 AMIN001433-PA
Anopheles culicifacies ACULI 1 ACUA019059-PA
Anopheles funestus AFUNE 1 AFUN003105-PA
Anopheles stephensi indian ASTEPI 0 none
Anopheles stephensi ASTEP 1 ASTE007754-PA
Anopheles albimanus AALBI 1 AALB001168-PA
Anopheles darlingi ADARL 1 ADAC000287-PA
Drosophila willistoni DWILL 1 FBpp0243983
Drosophila pseudoobscura DPSEU 1 FBpp0279031
Drosophila persimilis DPERS 2 FBpp0190152, FBpp0190153
Drosophila ananassae DANAN 1 FBpp0126316
Drosophila melanogaster DMELA 1 FBpp0080045
Drosophila sechellia DSECH 1 FBpp0191909
Drosophila simulans DSIMU 1 FBpp0222294
Drosophila erecta DEREC 1 FBpp0142389
Drosophila yakuba DYAKU 1 FBpp0263658
Drosophila virilis DVIRI 1 FBpp0232387
Drosophila mojavensis DMOJA 1 FBpp0166431
Drosophila grimshawi DGRIM 1 FBpp0147366
Lucilia cuprina LCUPR 1 KNC21068
Musca domestica MDOME 1 MDOA002895-PA
Stomoxys calcitrans SCALC 1 SCAU007807-PA
Glossina brevipalpis GBREV 1 GBRI001256-PA
Glossina palpalis GPALP 1 GPPI021458-PA
Glossina austeni GAUST 1 GAUT019037-PA
Glossina pallidipes GPALL 1 GPAI026614-PA
Glossina morsitans GMORS 0 none

Gene tree

Chironomidae-wide analysis

The Orthogroup for the longest transcript (g5974.t1) is OG0005971. Other genes in this orthogroup contains the following. [This data uses ab initio gene models predicted in Yoshida et al 2022, so most genes are not registered in public databases. Please contact the authors for more information on these data.]

Conservation

Organism Abb. ID Ortholog ID
Podonomus sp PODON TRINITY_DN113870_c0_g1_i1.p1
Parochlus steinenii PSTEI PSG10318
Trissopelopia nemorum TNEMO TRINITY_DN4586_c0_g1_i2.p1
Paraheptagyia tonnoiri PTONN TRINITY_DN1662_c0_g1_i3.p1
Telmatogeton pecinata TPECI TRINITY_DN224_c0_g4_i1.p1
Cricotopus draysoni CDRAY TRINITY_DN82008_c0_g1_i1.p1, TRINITY_DN3940_c0_g1_i1.p1
Clunio marinus CMARI CRL00807.1
Cardiocladius sp CARDI none
Belgica antarctica BANTA IU25_06192-mRNA-1
Kiefferophyes invenustulus KINVE TRINITY_DN60227_c0_g1_i2.p1, TRINITY_DN52834_c0_g1_i1.p1, TRINITY_DN57791_c0_g1_i1.p2, TRINITY_DN57791_c1_g1_i1.p1, TRINITY_DN54297_c0_g1_i8.p1, TRINITY_DN4906_c1_g1_i5.p1
Chironomus riparius CRIPA g9645.t1
Chironomus columbiensis CCOLU TRINITY_DN6115_c0_g1_i1.p1
Chironomus tentans CTENT g200.t1
Chironomus dilutus CDILU TRINITY_DN2723_c0_g1_i1.p1
Polypedilum nubifer PNUBI Pn.08612
Polypedilum vanderplanki PVAND g5974.t1
Polypedilum pembai PPEMB g8487.t1
Culicoides sonorensis CSONO CSON005460-1
Aedes aegypti lvpagwg AAEGYL AAEL014187-PA
Anopheles gambiae AGAMB AGAP008797-PA

Gene tree

Expression profile for this gene

Gene-level expression profile

Raw TPM values

Expression profile of isoforms

A heatmap representing isoforms with TPM > 0 in at least one sample. Expression profiles were are clustered based on the spearman correlation