Gene loci information

Transcript annotation

  • This transcript has been annotated as Putative Ethanolaminephosphotransferase 1.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_2 g6091 g6091.t3 TTS g6091.t3 14076607 14076607
chr_2 g6091 g6091.t3 isoform g6091.t3 14077408 14079195
chr_2 g6091 g6091.t3 exon g6091.t3.exon1 14077408 14077410
chr_2 g6091 g6091.t3 cds g6091.t3.CDS1 14077410 14077410
chr_2 g6091 g6091.t3 exon g6091.t3.exon2 14077474 14077697
chr_2 g6091 g6091.t3 cds g6091.t3.CDS2 14077474 14077697
chr_2 g6091 g6091.t3 exon g6091.t3.exon3 14077785 14077921
chr_2 g6091 g6091.t3 cds g6091.t3.CDS3 14077785 14077921
chr_2 g6091 g6091.t3 exon g6091.t3.exon4 14077978 14078215
chr_2 g6091 g6091.t3 cds g6091.t3.CDS4 14077978 14078215
chr_2 g6091 g6091.t3 exon g6091.t3.exon5 14078270 14078338
chr_2 g6091 g6091.t3 cds g6091.t3.CDS5 14078270 14078338
chr_2 g6091 g6091.t3 exon g6091.t3.exon6 14079139 14079195
chr_2 g6091 g6091.t3 cds g6091.t3.CDS6 14079139 14079195
chr_2 g6091 g6091.t3 TSS g6091.t3 14079278 14079278

Sequences

>g6091.t3 Gene=g6091 Length=728
ATGTGGAAAATAAAGTACTTGAATAAAGATCATTTAGAAGGTTTTGATAGATATAAGTAC
AACTGTGTCGATACTAGTTGGCTCAGCAAACATGTGATGCACAAATTTTGGGATTTTATT
GTTAAGTTTGTTCCAGTTAATATTGCACCTAATCTCATCACATTTTCCGGATTTATGCTC
ACCGTATTTAACTACATTCTCATAGCGTTTTATGACTACTATTTTCGAGTAGCTAACGAT
CCATTTGGCGAACAAATTCCGCGTTGGGTTTTTATAGTCGCGGGTATTAATGTTTTTGTT
GCTTATACACTAGATGGAATCGACGGAAAACATGCAAGGAGAACAGGAACTTCATCACCT
TTAGGAGAGCTTTTTGACCATGGACTTGATTCATATTCAAGTATCTTTATCATGATTTAT
CTCTTCAGTCTTTTTGGCTCACATGATTTGCCACAAATGCGAATGCATTTTATTACTTAC
TGTGTTTACTTAAATTTTTATCTCACACATTTTGAAAAATATAACACTGGAGTGTTATTT
TTGCCTTATGCCTATGATTATGTCATGTGGAGTTGCAGTATTACGCTGCTTGTGGCTGGA
TTTTTTGGTCCACAATTATTTACAACTCCTATTTTTGGCATCAAACCAACAGTTTATGTT
GAATTCATAATGTACATAGCGGGAATTGTTACTAGCCATCCTGTAATTGCATGGAATATT
TACAAGTC

>g6091.t3 Gene=g6091 Length=242
MWKIKYLNKDHLEGFDRYKYNCVDTSWLSKHVMHKFWDFIVKFVPVNIAPNLITFSGFML
TVFNYILIAFYDYYFRVANDPFGEQIPRWVFIVAGINVFVAYTLDGIDGKHARRTGTSSP
LGELFDHGLDSYSSIFIMIYLFSLFGSHDLPQMRMHFITYCVYLNFYLTHFEKYNTGVLF
LPYAYDYVMWSCSITLLVAGFFGPQLFTTPIFGIKPTVYVEFIMYIAGIVTSHPVIAWNI
YK

Protein features from InterProScan

Transcript Database ID Name Start End E.value
9 g6091.t3 Gene3D G3DSA:1.20.120.1760 - 21 214 4.3E-18
2 g6091.t3 PANTHER PTHR10414:SF36 GH11618P 1 242 1.6E-104
3 g6091.t3 PANTHER PTHR10414 ETHANOLAMINEPHOSPHOTRANSFERASE 1 242 1.6E-104
1 g6091.t3 Pfam PF01066 CDP-alcohol phosphatidyltransferase 49 130 2.3E-17
13 g6091.t3 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. 1 51 -
19 g6091.t3 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 52 74 -
15 g6091.t3 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. 75 85 -
18 g6091.t3 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 86 107 -
10 g6091.t3 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. 108 127 -
21 g6091.t3 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 128 147 -
16 g6091.t3 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. 148 152 -
17 g6091.t3 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 153 171 -
11 g6091.t3 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. 172 182 -
22 g6091.t3 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 183 202 -
14 g6091.t3 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. 203 221 -
20 g6091.t3 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 222 241 -
12 g6091.t3 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. 242 242 -
8 g6091.t3 ProSitePatterns PS00379 CDP-alcohol phosphatidyltransferases signature. 108 130 -
4 g6091.t3 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 48 70 -
5 g6091.t3 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 85 104 -
7 g6091.t3 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 177 199 -
6 g6091.t3 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 219 241 -

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0016020 membrane CC
GO:0008654 phospholipid biosynthetic process BP
GO:0016780 phosphotransferase activity, for other substituted phosphate groups MF

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.

Raw TPM values