Gene loci information

Isoforms of this gene

  • There are 4 isoforms that are expressed from this gene.
  • The longest transcript is g6091.t1
  • List of isoforms

g6091.t1, g6091.t2, g6091.t3, g6091.t4

The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively.

KEGG

Orthology

Pathway

  • This gene belongs to the following 1 pathways
ko00440
ko00564
ko00565
ko01100
ko01110

This gene has too many mapped pathways (>3). Please look at the original KEGG entry above for pathway visualization.

Gene conservation patterns

Diptera wide analysis

The Orthogroup for the longest transcript (g6091.t1) is OG0000611. Other genes in this orthogroup contains the following. This list is ordered by phylogeny determined by OrthoFinder analysis. Genes from ENSEMBL are linked to their corresponding pages. For P. nubifer and P. vanderplanki, they are linked to the Midgebase1 and Midgebase2 pages.

Conservation

Organism Abb. ID No. Orthologs Ortholog ID
Atta cephalotes ACEPH 1 XP_012055896.1
Apis mellifera AMELL 1 GB40463-PA
Culicoides sonorensis CSONO 2 CSON001609-1, CSON015193-1
Polypedilum nubifer PNUBI 2 Pn.13607, Pn.03187
Polypedilum vanderplanki PVAND 2 g6091.t1, g10678.t1
Polypedilum pembai PPEMB 1 g6259.t1
Belgica antarctica BANTA 2 IU25_07007-mRNA-1, IU25_08739-mRNA-1
Clunio marinus CMARI 2 CRL01603.1, CRK99640.1
Aedes aegypti lvpagwg AAEGYL 2 AAEL001472-PA, AAEL006667-PB
Culex quinquefasciatus quinquefasciatus CQUINQ 2 EDS32733.1, EDS37623.1
Culex quinquefasciatus CQUIN 2 CPIJ009362-PA, CPIJ000415-PA
Anopheles atroparvus AATRO 2 AATE014706-PA, AATE014311-PA
Anopheles sinensis china ASINEC 2 ASIC009996-PA, ASIC010759-PA
Anopheles dirus ADIRU 2 ADIR006789-PA, ADIR000694-PA
Anopheles farauti AFARA 2 AFAF014677-PA, AFAF006787-PA
Anopheles epiroticus AEPIR 2 AEPI001731-PA, AEPI002425-PA
Anopheles christyi ACHRI 2 ACHR001532-PA, ACHR004784-PA
Anopheles merus AMERU 2 AMEM003682-PA, AMEM010662-PA
Anopheles melas AMELA 2 AMEC015083-PA, AMEC012343-PA
Anopheles arabiensis AARAB 2 AARA009428-PA, AARA010967-PA
Anopheles coluzzii ACOLU 4 ACOM024227-PA, ACOM040731-PA, ACOM036330-PA, ACOM024333-PA
Anopheles coluzzii ngousso ACOLUN 2 ACON008631-PA, ACON008881-PA
Anopheles gambiae AGAMB 2 AGAP008881-PA, AGAP008631-PB
Anopheles quadriannulatus AQUAD 2 AQUA005206-PA, AQUA007828-PA
Anopheles minimus AMINI 2 AMIN001648-PA, AMIN009114-PA
Anopheles culicifacies ACULI 2 ACUA005756-PA, ACUA022826-PA
Anopheles funestus AFUNE 2 AFUN010011-PA, AFUN006628-PA
Anopheles stephensi indian ASTEPI 2 ASTEI04970-PA, ASTEI09898-PA
Anopheles stephensi ASTEP 2 ASTE009625-PA, ASTE003200-PA
Anopheles albimanus AALBI 2 AALB001817-PA, AALB016108-PA
Anopheles darlingi ADARL 3 ADAC007409-PA, ADAC005925-PA, ADAC010560-PA
Drosophila willistoni DWILL 2 FBpp0378688, FBpp0253521
Drosophila pseudoobscura DPSEU 2 FBpp0280161, FBpp0279070
Drosophila persimilis DPERS 2 FBpp0182958, FBpp0190192
Drosophila ananassae DANAN 2 FBpp0341505, FBpp0117437
Drosophila melanogaster DMELA 2 FBpp0080790, FBpp0079119
Drosophila sechellia DSECH 2 FBpp0198838, FBpp0194807
Drosophila simulans DSIMU 2 FBpp0324886, FBpp0315456
Drosophila erecta DEREC 2 FBpp0371183, FBpp0142054
Drosophila yakuba DYAKU 2 FBpp0363783, FBpp0353370
Drosophila virilis DVIRI 2 FBpp0232641, FBpp0231200
Drosophila mojavensis DMOJA 2 FBpp0166874, FBpp0389177
Drosophila grimshawi DGRIM 2 FBpp0405854, FBpp0145289
Lucilia cuprina LCUPR 2 KNC22733, KNC30316
Musca domestica MDOME 2 MDOA010729-PA, MDOA010980-PA
Stomoxys calcitrans SCALC 2 SCAU012031-PA, SCAU011731-PA
Glossina brevipalpis GBREV 2 GBRI036271-PA, GBRI008341-PA
Glossina palpalis GPALP 2 GPPI023893-PA, GPPI002606-PA
Glossina austeni GAUST 1 GAUT028228-PA
Glossina pallidipes GPALL 2 GPAI014678-PA, GPAI034234-PA
Glossina morsitans GMORS 3 GMOY008113-PA, GMOY010310-PA, GMOY008025-PA

Gene tree

Chironomidae-wide analysis

The Orthogroup for the longest transcript (g6091.t1) is OG0001523. Other genes in this orthogroup contains the following. [This data uses ab initio gene models predicted in Yoshida et al 2022, so most genes are not registered in public databases. Please contact the authors for more information on these data.]

Conservation

Organism Abb. ID Ortholog ID
Podonomus sp PODON TRINITY_DN317_c1_g1_i10.p1
Parochlus steinenii PSTEI PSG02856
Trissopelopia nemorum TNEMO TRINITY_DN506_c3_g1_i7.p1, TRINITY_DN1895_c0_g4_i1.p1
Paraheptagyia tonnoiri PTONN TRINITY_DN3550_c0_g1_i2.p1, TRINITY_DN743_c0_g1_i10.p1
Telmatogeton pecinata TPECI TRINITY_DN1556_c0_g1_i1.p1, TRINITY_DN0_c5773_g1_i1.p2, TRINITY_DN2381_c0_g1_i50.p1
Cricotopus draysoni CDRAY TRINITY_DN50868_c0_g1_i1.p1, TRINITY_DN2066_c0_g1_i1.p1, TRINITY_DN7869_c0_g1_i1.p1
Clunio marinus CMARI CRL01603.1, CRK99640.1
Cardiocladius sp CARDI TRINITY_DN14687_c0_g1_i7.p1, TRINITY_DN1834_c0_g1_i26.p1
Belgica antarctica BANTA IU25_07007-mRNA-1, IU25_08739-mRNA-1
Kiefferophyes invenustulus KINVE TRINITY_DN98187_c0_g1_i3.p1, TRINITY_DN5473_c0_g1_i4.p1, TRINITY_DN213534_c0_g1_i1.p1, TRINITY_DN98187_c0_g2_i1.p1
Chironomus riparius CRIPA g6447.t1, g9655.t1, g9042.t1
Chironomus columbiensis CCOLU TRINITY_DN6603_c1_g1_i8.p1, TRINITY_DN3526_c0_g1_i3.p1, TRINITY_DN6603_c0_g1_i1.p1, TRINITY_DN85399_c0_g1_i1.p1
Chironomus tentans CTENT g5847.t1, g10198.t1
Chironomus dilutus CDILU TRINITY_DN8443_c0_g1_i1.p1, TRINITY_DN3096_c0_g1_i14.p1, TRINITY_DN12178_c0_g1_i8.p1
Polypedilum nubifer PNUBI Pn.13607, Pn.03187
Polypedilum vanderplanki PVAND g6091.t1, g10678.t1
Polypedilum pembai PPEMB g6259.t1
Culicoides sonorensis CSONO CSON001609-1, CSON015193-1
Aedes aegypti lvpagwg AAEGYL AAEL001472-PA, AAEL006667-PB
Anopheles gambiae AGAMB AGAP008881-PA, AGAP008631-PB

Gene tree

Expression profile for this gene

Gene-level expression profile

Raw TPM values

Expression profile of isoforms

A heatmap representing isoforms with TPM > 0 in at least one sample. Expression profiles were are clustered based on the spearman correlation