Gene loci information

Isoforms of this gene

  • There are 1 isoforms that are expressed from this gene.
  • The longest transcript is g6192.t1
  • List of isoforms

g6192.t1

The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively.

KEGG

Orthology

Pathway

  • This gene belongs to the following 1 pathways
ko04970

Gene conservation patterns

Diptera wide analysis

The Orthogroup for the longest transcript (g6192.t1) is OG0000042. Other genes in this orthogroup contains the following. This list is ordered by phylogeny determined by OrthoFinder analysis. Genes from ENSEMBL are linked to their corresponding pages. For P. nubifer and P. vanderplanki, they are linked to the Midgebase1 and Midgebase2 pages.

Conservation

Organism Abb. ID No. Orthologs Ortholog ID
Atta cephalotes ACEPH 1 XP_012063536.1
Apis mellifera AMELL 2 GB40163-PA, GB40164-PA
Culicoides sonorensis CSONO 2 CSON006893-1, CSON000557-1
Polypedilum nubifer PNUBI 8 Pn.14662, Pn.13115, Pn.04389, Pn.14180, Pn.13114, Pn.13116, Pn.13299, Pn.14663
Polypedilum vanderplanki PVAND 9 g8475.t1, g1247.t1, g8476.t1, g1249.t1, g1245.t1, g1246.t1, g1248.t1, g8477.t6, g6192.t1
Polypedilum pembai PPEMB 5 g8668.t1, g8667.t1, g3417.t1, g888.t1, g5587.t1
Belgica antarctica BANTA 4 IU25_08864-mRNA-1, IU25_08865-mRNA-1, IU25_03203-mRNA-1, IU25_08866-mRNA-1
Clunio marinus CMARI 3 CRL05170.1, CRL08737.1, CRL05171.1
Aedes aegypti lvpagwg AAEGYL 4 AAEL003723-PA, AAEL003712-PA, AAEL017132-PB, AAEL015404-PA
Culex quinquefasciatus quinquefasciatus CQUINQ 4 EDS34910.1, EDS45638.1, EDS45639.1, EDS34911.1
Culex quinquefasciatus CQUIN 4 CPIJ005451-PA, CPIJ010731-PA, CPIJ005450-PA, CPIJ010730-PA
Anopheles atroparvus AATRO 6 AATE021752-PA, AATE011575-PA, AATE021861-PA, AATE012398-PA, AATE002992-PA, AATE021862-PA
Anopheles sinensis china ASINEC 2 ASIC019695-PA, ASIC019694-PA
Anopheles dirus ADIRU 5 ADIR015918-PA, ADIR007285-PA, ADIR015920-PA, ADIR015919-PA, ADIR007286-PA
Anopheles farauti AFARA 4 AFAF018777-PA, AFAF016736-PA, AFAF006388-PA, AFAF001994-PA
Anopheles epiroticus AEPIR 2 AEPI009238-PA, AEPI009513-PA
Anopheles christyi ACHRI 5 ACHR014988-PA, ACHR014986-PA, ACHR014989-PA, ACHR014987-PA, ACHR000939-PA
Anopheles merus AMERU 6 AMEM019391-PA, AMEM015898-PA, AMEM000877-PA, AMEM002643-PA, AMEM011720-PA, AMEM014474-PA
Anopheles melas AMELA 5 AMEC023203-PA, AMEC023202-PA, AMEC009553-PA, AMEC023325-PA, AMEC023201-PA
Anopheles arabiensis AARAB 5 AARA016506-PA, AARA016505-PA, AARA007999-PA, AARA016503-PA, AARA016504-PA
Anopheles coluzzii ACOLU 5 ACOM043118-PA, ACOM025599-PA, ACOM042550-PA, ACOM043119-PA, ACOM025597-PA
Anopheles coluzzii ngousso ACOLUN 6 ACON007346-PA, ACON007385-PA, ACON007344-PA, ACON007386-PA, ACON007347-PA, ACON007343-PA
Anopheles gambiae AGAMB 7 AGAP007344-PA, AGAP007343-PA, AGAP007385-PA, AGAP007386-PA, AGAP007347-PA, AGAP007346-PA, AGAP007345-PA
Anopheles quadriannulatus AQUAD 6 AQUA017254-PA, AQUA017253-PA, AQUA016562-PA, AQUA016561-PA, AQUA016560-PA, AQUA016559-PA
Anopheles minimus AMINI 2 AMIN010523-PA, AMIN010488-PA
Anopheles culicifacies ACULI 2 ACUA025437-PA, ACUA004102-PA
Anopheles funestus AFUNE 3 AFUN021140-PA, AFUN021139-PA, AFUN002037-PA
Anopheles stephensi indian ASTEPI 3 ASTEI01341-PA, ASTEI01309-PA, ASTEI01308-PA
Anopheles stephensi ASTEP 2 ASTE005878-PA, ASTE005846-PA
Anopheles albimanus AALBI 2 AALB005752-PA, AALB004517-PA
Anopheles darlingi ADARL 3 ADAC005092-PA, ADAC005629-PA, ADAC005089-PA
Drosophila willistoni DWILL 12 FBpp0250238, FBpp0241297, FBpp0241403, FBpp0250249, FBpp0250260, FBpp0241186, FBpp0250732, FBpp0244469, FBpp0250126, FBpp0250731, FBpp0250227, FBpp0374159
Drosophila pseudoobscura DPSEU 17 FBpp0286674, FBpp0286668, FBpp0286517, FBpp0286513, FBpp0286519, FBpp0338540, FBpp0286518, FBpp0331170, FBpp0276376, FBpp0338441, FBpp0286514, FBpp0272608, FBpp0286671, FBpp0286672, FBpp0286673, FBpp0286515, FBpp0286669
Drosophila persimilis DPERS 14 FBpp0178619, FBpp0180264, FBpp0180266, FBpp0180263, FBpp0181540, FBpp0185533, FBpp0180798, FBpp0180189, FBpp0180538, FBpp0180911, FBpp0180190, FBpp0185521, FBpp0181539, FBpp0180265
Drosophila ananassae DANAN 10 FBpp0113268, FBpp0127628, FBpp0115943, FBpp0127629, FBpp0124274, FBpp0115852, FBpp0113264, FBpp0113265, FBpp0113262, FBpp0115942
Drosophila melanogaster DMELA 11 FBpp0086336, FBpp0072526, FBpp0072533, FBpp0072529, FBpp0070742, FBpp0072524, FBpp0085561, FBpp0292257, FBpp0072527, FBpp0072530, FBpp0085560
Drosophila sechellia DSECH 9 FBpp0201557, FBpp0201245, FBpp0195859, FBpp0201247, FBpp0195855, FBpp0193889, FBpp0195706, FBpp0195857, FBpp0195710
Drosophila simulans DSIMU 13 FBpp0318507, FBpp0324482, FBpp0318823, FBpp0319699, FBpp0216019, FBpp0211995, FBpp0211996, FBpp0211895, FBpp0313860, FBpp0223660, FBpp0322087, FBpp0314094, FBpp0223661
Drosophila erecta DEREC 14 FBpp0133309, FBpp0138368, FBpp0133161, FBpp0140837, FBpp0138369, FBpp0133308, FBpp0369160, FBpp0369019, FBpp0137306, FBpp0139385, FBpp0133166, FBpp0133163, FBpp0133305, FBpp0139386
Drosophila yakuba DYAKU 12 FBpp0258789, FBpp0266135, FBpp0265986, FBpp0354868, FBpp0266134, FBpp0358441, FBpp0259097, FBpp0265991, FBpp0261414, FBpp0265987, FBpp0258788, FBpp0266133
Drosophila virilis DVIRI 12 FBpp0226922, FBpp0233215, FBpp0227313, FBpp0400607, FBpp0227310, FBpp0233060, FBpp0226925, FBpp0227311, FBpp0233226, FBpp0226924, FBpp0236095, FBpp0227312
Drosophila mojavensis DMOJA 12 FBpp0165855, FBpp0169064, FBpp0165979, FBpp0165859, FBpp0380421, FBpp0169065, FBpp0165854, FBpp0165004, FBpp0165858, FBpp0165978, FBpp0165860, FBpp0167879
Drosophila grimshawi DGRIM 14 FBpp0149893, FBpp0149894, FBpp0153799, FBpp0155049, FBpp0154966, FBpp0149895, FBpp0155050, FBpp0149391, FBpp0409717, FBpp0419360, FBpp0158661, FBpp0157326, FBpp0146752, FBpp0149392
Lucilia cuprina LCUPR 11 KNC28094, KNC21642, KNC32068, KNC32067, KNC32122, KNC31151, KNC28071, KNC32127, KNC21641, KNC28070, KNC33416
Musca domestica MDOME 34 MDOA001149-PC, MDOA002301-PA, MDOA001976-PA, MDOA014785-PA, MDOA004950-PA, MDOA015052-PA, MDOA012553-PB, MDOA005967-PA, MDOA001084-PB, MDOA014680-PB, MDOA012752-PB, MDOA014569-PA, MDOA003622-PA, MDOA016913-PA, MDOA011693-PB, MDOA004539-PA, MDOA013199-PA, MDOA009234-PA, MDOA005080-PA, MDOA006985-PA, MDOA003363-PB, MDOA016653-PA, MDOA010258-PA, MDOA001430-PB, MDOA013623-PB, MDOA016000-PA, MDOA008125-PA, MDOA000595-PA, MDOA012964-PB, MDOA000360-PA, MDOA002680-PA, MDOA016673-PA, MDOA006516-PA, MDOA003365-PA
Stomoxys calcitrans SCALC 22 SCAU001110-PA, SCAU010615-PA, SCAU008596-PA, SCAU016096-PA, SCAU005386-PA, SCAU003045-PA, SCAU000196-PA, SCAU005004-PA, SCAU010996-PA, SCAU005820-PA, SCAU000769-PA, SCAU003494-PA, SCAU000404-PA, SCAU008246-PA, SCAU013884-PA, SCAU007484-PA, SCAU016021-PA, SCAU005152-PA, SCAU001341-PA, SCAU012724-PA, SCAU007281-PA, SCAU007508-PA
Glossina brevipalpis GBREV 4 GBRI033538-PA, GBRI035025-PA, GBRI033539-PA, GBRI035022-PA
Glossina palpalis GPALP 4 GPPI006191-PA, GPPI025321-PA, GPPI025317-PA, GPPI006178-PA
Glossina austeni GAUST 4 GAUT030480-PA, GAUT020714-PA, GAUT030491-PA, GAUT020713-PA
Glossina pallidipes GPALL 3 GPAI010329-PA, GPAI022460-PA, GPAI022459-PA
Glossina morsitans GMORS 3 GMOY000104-PA, GMOY000103-PA, GMOY001498-PA

Gene tree

Chironomidae-wide analysis

The Orthogroup for the longest transcript (g6192.t1) is OG0000225. Other genes in this orthogroup contains the following. [This data uses ab initio gene models predicted in Yoshida et al 2022, so most genes are not registered in public databases. Please contact the authors for more information on these data.]

Conservation

Organism Abb. ID Ortholog ID
Podonomus sp PODON TRINITY_DN25477_c0_g1_i7.p4, TRINITY_DN195_c1_g1_i2.p1, TRINITY_DN315_c7_g1_i2.p1, TRINITY_DN195_c8_g1_i2.p1, TRINITY_DN36661_c0_g1_i1.p3, TRINITY_DN14522_c0_g1_i5.p1, TRINITY_DN37166_c0_g1_i2.p1, TRINITY_DN26531_c0_g1_i3.p1, TRINITY_DN3334_c0_g1_i5.p1, TRINITY_DN14522_c0_g2_i1.p1, TRINITY_DN43652_c0_g1_i1.p1, TRINITY_DN3334_c2_g1_i1.p1, TRINITY_DN30265_c0_g1_i1.p1
Parochlus steinenii PSTEI PSG09903, PSG09990
Trissopelopia nemorum TNEMO TRINITY_DN3406_c0_g1_i9.p1, TRINITY_DN15933_c0_g1_i1.p1, TRINITY_DN2622_c0_g1_i1.p1
Paraheptagyia tonnoiri PTONN TRINITY_DN3385_c0_g1_i2.p1, TRINITY_DN4093_c0_g2_i7.p1
Telmatogeton pecinata TPECI TRINITY_DN12375_c0_g1_i2.p1, TRINITY_DN655_c0_g1_i11.p1
Cricotopus draysoni CDRAY TRINITY_DN87479_c0_g1_i1.p1, TRINITY_DN14468_c0_g1_i1.p1, TRINITY_DN8014_c0_g1_i1.p1, TRINITY_DN2495_c0_g1_i1.p1
Clunio marinus CMARI CRL05170.1, CRL08737.1, CRL05171.1
Cardiocladius sp CARDI TRINITY_DN4957_c0_g1_i3.p1, TRINITY_DN2863_c0_g1_i1.p1, TRINITY_DN7352_c0_g1_i3.p1, TRINITY_DN7713_c0_g1_i2.p1, TRINITY_DN61458_c0_g1_i1.p1
Belgica antarctica BANTA IU25_08864-mRNA-1, IU25_08865-mRNA-1, IU25_03203-mRNA-1, IU25_08866-mRNA-1
Kiefferophyes invenustulus KINVE TRINITY_DN8187_c0_g1_i1.p2, TRINITY_DN36449_c0_g2_i1.p2, TRINITY_DN26844_c0_g1_i2.p1, TRINITY_DN20913_c0_g7_i1.p2, TRINITY_DN238969_c0_g1_i1.p1, TRINITY_DN51003_c0_g1_i1.p1, TRINITY_DN5290_c0_g1_i5.p2, TRINITY_DN17780_c0_g1_i3.p1, TRINITY_DN9778_c0_g1_i13.p1, TRINITY_DN17780_c0_g2_i1.p1, TRINITY_DN20913_c0_g2_i2.p1, TRINITY_DN36449_c0_g1_i3.p1
Chironomus riparius CRIPA g13787.t1, g15821.t1, g13788.t1, g18142.t1, g13789.t1
Chironomus columbiensis CCOLU TRINITY_DN18839_c0_g1_i3.p1, TRINITY_DN952_c0_g1_i2.p1, TRINITY_DN11949_c0_g1_i3.p1, TRINITY_DN4552_c0_g1_i3.p1, TRINITY_DN8391_c0_g1_i5.p1, TRINITY_DN74437_c0_g1_i1.p1, TRINITY_DN5587_c0_g1_i1.p1, TRINITY_DN668_c0_g1_i3.p1
Chironomus tentans CTENT g13167.t1, g10061.t1, g6303.t1, g13166.t1, g10063.t1, g10062.t1
Chironomus dilutus CDILU TRINITY_DN41194_c0_g1_i1.p1, TRINITY_DN5586_c0_g1_i1.p1, TRINITY_DN6637_c0_g1_i1.p1, TRINITY_DN1178_c0_g1_i7.p1
Polypedilum nubifer PNUBI Pn.13114, Pn.13116, Pn.14662, Pn.13115, Pn.04389, Pn.14663, Pn.14180
Polypedilum vanderplanki PVAND g8475.t1, g1247.t1, g8476.t1, g1249.t1, g1245.t1, g1246.t1, g1248.t1, g8477.t6, g6192.t1
Polypedilum pembai PPEMB g8668.t1, g8667.t1, g3417.t1, g888.t1, g5587.t1
Culicoides sonorensis CSONO CSON005082-1, CSON000557-1
Aedes aegypti lvpagwg AAEGYL AAEL003723-PA, AAEL003712-PA, AAEL017132-PB, AAEL015404-PA
Anopheles gambiae AGAMB AGAP007344-PA, AGAP007343-PA, AGAP007385-PA, AGAP007386-PA, AGAP007347-PA, AGAP007346-PA, AGAP007345-PA

Gene tree

Expression profile for this gene

Gene-level expression profile

Raw TPM values

Expression profile of isoforms

A heatmap representing isoforms with TPM > 0 in at least one sample. Expression profiles were are clustered based on the spearman correlation