General information for g6746.t2
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Putative N-acetylgalactosaminyltransferase 6.
Parent gene
- The parent gene g6746 is located on chr_2: 18446550..18448376 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_2 | g6746 | g6746.t2 | isoform | g6746.t2 | 18445949 | 18447066 |
| chr_2 | g6746 | g6746.t2 | exon | g6746.t2.exon1 | 18445949 | 18446383 |
| chr_2 | g6746 | g6746.t2 | exon | g6746.t2.exon2 | 18446467 | 18447066 |
| chr_2 | g6746 | g6746.t2 | cds | g6746.t2.CDS1 | 18446550 | 18447065 |
| chr_2 | g6746 | g6746.t2 | TSS | g6746.t2 | NA | NA |
| chr_2 | g6746 | g6746.t2 | TTS | g6746.t2 | NA | NA |
Sequences
>g6746.t2 Gene=g6746 Length=1035
TTTTGTTATTTAATAAGTTTCTTTCCAAAAAACACTTGAAAATTTATTTTTATTTTACCG
CATAAATATTTTTAACTGCACTCTATGTTGTTGTACAAAGACATCTGTTTTAAAATTGTA
TTCACTCTATTTTGACGTCCATTTATTGTTTACATGAATTTATATCAATATAATTCTCAT
TTATCGGTTTATTATATTTTTTTCTAAAAGAATATACATTTTTAATAAATTGTTAGAATT
ATAATTAGATAAAGATTATACCTAAGGGTAGTCTTTAATAAAAGGACCTAAAATAAAGAT
TTTTTAAAAAAAAAAAATTTAAATGTTAGAGAGATAATAACAGATATCCTTAATCAATAT
ATTTTTTGTTGACAACTCATCAATCAATTGACAATAGGCACATTTTTAAATAAAATTTTC
AATGACCTGATATAGATAAAAAGATGAGACGAAATTTACTGAAATTAACTAAATTGCTGA
TAATATCGGTTGTGTTCTTTTTACTAGTTGTACTATTCATGAAAAGTATATCGAACACAT
CATCGTTTAATAATTTGCTACCGTCATCACAGAACATTCTATTTTCTAATGATAAAATTC
AGAAGCAAAATCATCAATTTGGAGCATTTTTTGGCCGAATTCGAAATGAAAAATTGCAGA
AAATCGACTGGCATGATTATGAACAAATAAAAAAGGATGCACAACGAATTGGATTTGGTG
AAAATGGAAAATCTGAAAAATTAGATGAAACTGAGAAAAGCTTAGAAGATGATTTCTTTC
GGCAGAATGGTTTTAATGCTTTGCTCAGTGATAAAATAAGCATTAATCGGAGTATTCCTG
ATATTAGACATGTGAAATGCAAAGAAAAGAAATATTTATCAGAACTTCCTTCTGTGTCAG
TTATAATACCATTCTACAATGAGCACTTTTCAACTTTATTACGAACAGTATATTCAGTAA
TAAATAGAAGTCCAAGTGATTTATTAAATGAAATTATTTTGGTAGATGATTGTAGTAAGA
AAGATTTTTTAAAAG
>g6746.t2 Gene=g6746 Length=172
MKSISNTSSFNNLLPSSQNILFSNDKIQKQNHQFGAFFGRIRNEKLQKIDWHDYEQIKKD
AQRIGFGENGKSEKLDETEKSLEDDFFRQNGFNALLSDKISINRSIPDIRHVKCKEKKYL
SELPSVSVIIPFYNEHFSTLLRTVYSVINRSPSDLLNEIILVDDCSKKDFLK
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 5 | g6746.t2 | Gene3D | G3DSA:3.90.550.10 | Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A | 45 | 172 | 0 |
| 2 | g6746.t2 | PANTHER | PTHR11675:SF41 | POLYPEPTIDE N-ACETYLGALACTOSAMINYLTRANSFERASE 10 | 41 | 172 | 0 |
| 3 | g6746.t2 | PANTHER | PTHR11675 | N-ACETYLGALACTOSAMINYLTRANSFERASE | 41 | 172 | 0 |
| 1 | g6746.t2 | Pfam | PF00535 | Glycosyl transferase family 2 | 127 | 169 | 0 |
| 4 | g6746.t2 | SUPERFAMILY | SSF53448 | Nucleotide-diphospho-sugar transferases | 103 | 170 | 0 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed