Gene loci information

Isoforms of this gene

  • There are 4 isoforms that are expressed from this gene.
  • The longest transcript is g6746.t1
  • List of isoforms

g6746.t1, g6746.t2, g6746.t3, g6746.t4

The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively.

KEGG

Orthology

Pathway

  • This gene belongs to the following 1 pathways
ko00512
ko00514
ko01100

Gene conservation patterns

Diptera wide analysis

The Orthogroup for the longest transcript (g6746.t1) is OG0000145. Other genes in this orthogroup contains the following. This list is ordered by phylogeny determined by OrthoFinder analysis. Genes from ENSEMBL are linked to their corresponding pages. For P. nubifer and P. vanderplanki, they are linked to the Midgebase1 and Midgebase2 pages.

Conservation

Organism Abb. ID No. Orthologs Ortholog ID
Atta cephalotes ACEPH 1 XP_012057561.1
Apis mellifera AMELL 1 GB46740-PA
Culicoides sonorensis CSONO 3 CSON005690-1, CSON005693-1, CSON005670-1
Polypedilum nubifer PNUBI 14 Pn.10420, Pn.10391, Pn.09558, Pn.08362, Pn.02763, Pn.13011, Pn.06579, Pn.04997, Pn.14863, Pn.13012, Pn.04996, Pn.03542, Pn.16548, Pn.09847
Polypedilum vanderplanki PVAND 14 g7798.t1, g16725.t1, g13375.t1, g17454.t1, g3024.t1, g15435.t1, g6746.t1, g10767.t1, g4336.t1, g14846.t1, g11974.t1, g15214.t1, g7795.t1, g4335.t1
Polypedilum pembai PPEMB 7 g7346.t1, g7344.t1, g4751.t1, g14441.t1, g13270.t1, g14359.t1, g9953.t1
Belgica antarctica BANTA 11 IU25_13470-mRNA-1, IU25_03940-mRNA-1, IU25_13426-mRNA-1, IU25_01740-mRNA-1, IU25_13099-mRNA-1, IU25_03943-mRNA-1, IU25_08127-mRNA-1, IU25_12151-mRNA-1, IU25_03325-mRNA-1, IU25_02522-mRNA-1, IU25_03944-mRNA-1
Clunio marinus CMARI 21 CRK94687.1, CRL03928.1, CRK93740.1, CRL03896.1, CRL03582.1, CRK95802.1, CRK91592.1, CRK91590.1, CRL06521.1, CRL04923.1, CRK89319.1, CRK97119.1, CRK96601.1, CRK87000.1, CRL05168.1, CRK98204.1, CRK91591.1, CRL06432.1, CRK91593.1, CRK94681.1, CRK91362.1
Aedes aegypti lvpagwg AAEGYL 3 AAEL000654-PA, AAEL021450-PA, AAEL000646-PA
Culex quinquefasciatus quinquefasciatus CQUINQ 4 EDS26410.1, EDS26408.1, EDS39929.1, EDS39933.1
Culex quinquefasciatus CQUIN 4 CPIJ005229-PA, CPIJ013569-PA, CPIJ005231-PA, CPIJ013573-PA
Anopheles atroparvus AATRO 3 AATE017489-PA, AATE011975-PA, AATE009836-PA
Anopheles sinensis china ASINEC 3 ASIC017991-PA, ASIC013018-PA, ASIC015884-PA
Anopheles dirus ADIRU 3 ADIR004363-PA, ADIR000544-PA, ADIR009737-PA
Anopheles farauti AFARA 3 AFAF002467-PA, AFAF021861-PA, AFAF007968-PA
Anopheles epiroticus AEPIR 1 AEPI000696-PA
Anopheles christyi ACHRI 3 ACHR002459-PA, ACHR014349-PA, ACHR009595-PA
Anopheles merus AMERU 3 AMEM001390-PA, AMEM017833-PA, AMEM015003-PA
Anopheles melas AMELA 3 AMEC010348-PA, AMEC003891-PA, AMEC008796-PA
Anopheles arabiensis AARAB 3 AARA014319-PA, AARA000770-PA, AARA005853-PA
Anopheles coluzzii ACOLU 3 ACOM040808-PA, ACOM042575-PA, ACOM023424-PA
Anopheles coluzzii ngousso ACOLUN 4 ACON012414-PA, ACON029718-PA, ACON011984-PA, ACON029716-PA
Anopheles gambiae AGAMB 4 AGAP029716-PA, AGAP012414-PA, AGAP011984-PA, AGAP029718-PA
Anopheles quadriannulatus AQUAD 3 AQUA014349-PA, AQUA008652-PA, AQUA006722-PA
Anopheles minimus AMINI 3 AMIN008914-PA, AMIN004404-PA, AMIN006561-PA
Anopheles culicifacies ACULI 3 ACUA018956-PA, ACUA021021-PA, ACUA006898-PA
Anopheles funestus AFUNE 4 AFUN002660-PA, AFUN018800-PA, AFUN018893-PA, AFUN009692-PA
Anopheles stephensi indian ASTEPI 3 ASTEI02297-PA, ASTEI06729-PA, ASTEI05878-PA
Anopheles stephensi ASTEP 3 ASTE006692-PA, ASTE008481-PA, ASTE004568-PA
Anopheles albimanus AALBI 3 AALB009946-PA, AALB003801-PA, AALB001238-PA
Anopheles darlingi ADARL 3 ADAC008358-PA, ADAC005057-PA, ADAC003723-PA
Drosophila willistoni DWILL 4 FBpp0247577, FBpp0245242, FBpp0245713, FBpp0244701
Drosophila pseudoobscura DPSEU 2 FBpp0286849, FBpp0279960
Drosophila persimilis DPERS 2 FBpp0186745, FBpp0182762
Drosophila ananassae DANAN 4 FBpp0127442, FBpp0127284, FBpp0118429, FBpp0118430
Drosophila melanogaster DMELA 4 FBpp0113016, FBpp0072842, FBpp0075331, FBpp0077211
Drosophila sechellia DSECH 4 FBpp0207032, FBpp0192619, FBpp0195992, FBpp0192618
Drosophila simulans DSIMU 4 FBpp0221637, FBpp0221638, FBpp0212971, FBpp0312916
Drosophila erecta DEREC 4 FBpp0143493, FBpp0143492, FBpp0134470, FBpp0133435
Drosophila yakuba DYAKU 5 FBpp0263247, FBpp0265350, FBpp0268170, FBpp0267281, FBpp0263248
Drosophila virilis DVIRI 3 FBpp0228013, FBpp0226223, FBpp0225778
Drosophila mojavensis DMOJA 3 FBpp0160618, FBpp0162400, FBpp0160904
Drosophila grimshawi DGRIM 4 FBpp0150895, FBpp0144814, FBpp0415615, FBpp0402936
Lucilia cuprina LCUPR 4 KNC34646, KNC32769, KNC22874, KNC27161
Musca domestica MDOME 4 MDOA003323-PA, MDOA010066-PA, MDOA012398-PB, MDOA011860-PA
Stomoxys calcitrans SCALC 4 SCAU014965-PA, SCAU005814-PA, SCAU003082-PA, SCAU004044-PA
Glossina brevipalpis GBREV 3 GBRI011105-PA, GBRI005819-PA, GBRI041282-PA
Glossina palpalis GPALP 2 GPPI002825-PA, GPPI010283-PA
Glossina austeni GAUST 2 GAUT003943-PA, GAUT045355-PA
Glossina pallidipes GPALL 2 GPAI015414-PA, GPAI025218-PA
Glossina morsitans GMORS 2 GMOY005102-PA, GMOY007813-PA

Gene tree

Chironomidae-wide analysis

The Orthogroup for the longest transcript (g6746.t1) is OG0000035. Other genes in this orthogroup contains the following. [This data uses ab initio gene models predicted in Yoshida et al 2022, so most genes are not registered in public databases. Please contact the authors for more information on these data.]

Conservation

Organism Abb. ID Ortholog ID
Podonomus sp PODON TRINITY_DN18230_c0_g1_i2.p1, TRINITY_DN774_c0_g2_i3.p1, TRINITY_DN774_c0_g1_i4.p1, TRINITY_DN9009_c0_g1_i1.p1, TRINITY_DN22827_c0_g1_i3.p1
Parochlus steinenii PSTEI PSG09872, PSG13317, PSG06158, PSG05119, PSG04038, PSG03215, PSG02413, PSG11135, PSG06776, PSG12300, PSG03228, PSG05121
Trissopelopia nemorum TNEMO TRINITY_DN2123_c0_g1_i2.p1, TRINITY_DN865_c0_g1_i1.p1, TRINITY_DN20517_c0_g1_i1.p1, TRINITY_DN4493_c0_g2_i1.p1, TRINITY_DN6016_c0_g1_i3.p1, TRINITY_DN2017_c1_g1_i7.p1, TRINITY_DN865_c0_g2_i2.p1, TRINITY_DN3221_c0_g1_i4.p1
Paraheptagyia tonnoiri PTONN TRINITY_DN8560_c0_g1_i3.p1, TRINITY_DN612_c0_g1_i1.p1, TRINITY_DN24062_c0_g1_i1.p1, TRINITY_DN13099_c0_g1_i2.p1, TRINITY_DN1292_c0_g4_i1.p1, TRINITY_DN8470_c0_g1_i2.p1
Telmatogeton pecinata TPECI TRINITY_DN7621_c0_g1_i6.p1, TRINITY_DN564_c0_g1_i36.p1, TRINITY_DN794_c0_g1_i2.p1, TRINITY_DN50263_c0_g1_i1.p1, TRINITY_DN26093_c0_g1_i1.p1
Cricotopus draysoni CDRAY TRINITY_DN22165_c0_g1_i1.p1, TRINITY_DN14330_c0_g1_i1.p1, TRINITY_DN2277_c0_g1_i3.p1, TRINITY_DN1280_c0_g1_i1.p1, TRINITY_DN91203_c0_g1_i1.p1, TRINITY_DN3159_c0_g1_i3.p1, TRINITY_DN34818_c0_g1_i1.p1, TRINITY_DN9813_c0_g1_i3.p1, TRINITY_DN11827_c0_g1_i1.p1, TRINITY_DN13636_c0_g1_i1.p1, TRINITY_DN19114_c0_g1_i1.p1, TRINITY_DN30528_c0_g1_i1.p1, TRINITY_DN19288_c0_g1_i1.p1, TRINITY_DN22405_c0_g1_i1.p1, TRINITY_DN7261_c0_g1_i1.p1, TRINITY_DN44478_c0_g1_i1.p1, TRINITY_DN5612_c0_g1_i1.p1, TRINITY_DN86542_c0_g1_i1.p1, TRINITY_DN93386_c0_g1_i1.p1, TRINITY_DN22054_c0_g1_i1.p1
Clunio marinus CMARI CRK94687.1, CRL03928.1, CRK93740.1, CRL03896.1, CRL03582.1, CRK95802.1, CRK91592.1, CRK91590.1, CRL06521.1, CRL04923.1, CRK89319.1, CRK97119.1, CRK96601.1, CRK87000.1, CRL05168.1, CRK98204.1, CRK91591.1, CRL06432.1, CRK91593.1, CRK94681.1, CRK91362.1
Cardiocladius sp CARDI TRINITY_DN9050_c0_g1_i2.p1, TRINITY_DN9372_c0_g1_i2.p1, TRINITY_DN23680_c0_g1_i1.p1, TRINITY_DN471_c0_g1_i19.p1, TRINITY_DN4512_c0_g1_i2.p1, TRINITY_DN4174_c0_g1_i8.p1, TRINITY_DN11993_c0_g1_i1.p1
Belgica antarctica BANTA IU25_02517-mRNA-1, IU25_03940-mRNA-1, IU25_01740-mRNA-1, IU25_13099-mRNA-1, IU25_12704-mRNA-1, IU25_11950-mRNA-1, IU25_03943-mRNA-1, IU25_08127-mRNA-1, IU25_05769-mRNA-1, IU25_12151-mRNA-1, IU25_13158-mRNA-1, IU25_03325-mRNA-1, IU25_08901-mRNA-1, IU25_02522-mRNA-1, IU25_03944-mRNA-1
Kiefferophyes invenustulus KINVE TRINITY_DN3262_c0_g1_i9.p1, TRINITY_DN198804_c0_g1_i1.p1, TRINITY_DN8547_c0_g2_i3.p1, TRINITY_DN33352_c0_g1_i6.p1, TRINITY_DN36893_c0_g1_i1.p1, TRINITY_DN37071_c0_g1_i4.p1, TRINITY_DN195744_c0_g1_i1.p1, TRINITY_DN70_c0_g2_i8.p1, TRINITY_DN207383_c0_g1_i1.p1, TRINITY_DN70_c0_g1_i2.p1, TRINITY_DN26389_c1_g1_i1.p1
Chironomus riparius CRIPA g9497.t1, g7965.t1, g3753.t1, g13413.t1, g1581.t1, g13495.t1, g9633.t1, g8865.t1, g5762.t1, g1116.t1, g17245.t1, g12475.t1, g16.t1, g4093.t1, g6369.t1, g7320.t1
Chironomus columbiensis CCOLU TRINITY_DN9545_c0_g1_i2.p1, TRINITY_DN3302_c0_g2_i1.p1, TRINITY_DN9425_c0_g1_i5.p1, TRINITY_DN1077_c0_g1_i5.p1, TRINITY_DN13399_c0_g1_i3.p1, TRINITY_DN25841_c0_g1_i2.p1, TRINITY_DN3079_c0_g1_i7.p1, TRINITY_DN12487_c0_g1_i4.p1, TRINITY_DN18217_c0_g1_i2.p1, TRINITY_DN11554_c0_g1_i5.p1, TRINITY_DN2970_c0_g1_i3.p1, TRINITY_DN3302_c0_g1_i3.p1
Chironomus tentans CTENT g14804.t1, g9845.t1, g14614.t1, g12068.t1, g4154.t1, g12065.t1, g9084.t1, g150.t1, g9085.t1, g8307.t1, g632.t1, g12348.t1, g17039.t1, g14616.t1, g6080.t1, g8604.t1, g5950.t1
Chironomus dilutus CDILU TRINITY_DN12423_c0_g1_i4.p1, TRINITY_DN18738_c0_g1_i1.p1, TRINITY_DN964_c0_g1_i1.p1, TRINITY_DN12423_c0_g2_i1.p1, TRINITY_DN1561_c4_g1_i1.p1, TRINITY_DN12076_c0_g1_i1.p1, TRINITY_DN11454_c0_g1_i1.p1, TRINITY_DN3220_c0_g2_i1.p1, TRINITY_DN8167_c0_g1_i1.p1, TRINITY_DN2236_c0_g1_i8.p1, TRINITY_DN1064_c0_g1_i19.p1, TRINITY_DN964_c0_g2_i1.p1, TRINITY_DN3509_c0_g1_i2.p1, TRINITY_DN1220_c0_g2_i1.p1, TRINITY_DN26720_c0_g1_i1.p1, TRINITY_DN3220_c0_g1_i1.p1, TRINITY_DN7934_c0_g1_i1.p1
Polypedilum nubifer PNUBI Pn.10420, Pn.10391, Pn.09558, Pn.08362, Pn.02763, Pn.13011, Pn.06579, Pn.04997, Pn.14863, Pn.00501, Pn.13012, Pn.04996, Pn.03542, Pn.16548, Pn.09847
Polypedilum vanderplanki PVAND g7798.t1, g16725.t1, g13375.t1, g17454.t1, g3024.t1, g15435.t1, g6746.t1, g10767.t1, g4336.t1, g14846.t1, g11974.t1, g15214.t1, g7795.t1, g4335.t1
Polypedilum pembai PPEMB g7346.t1, g14359.t1, g5612.t1, g12014.t1, g5611.t1, g7344.t1, g14441.t1, g4751.t1, g9953.t1
Culicoides sonorensis CSONO CSON005690-1, CSON005693-1, CSON005670-1
Aedes aegypti lvpagwg AAEGYL AAEL000654-PA, AAEL021450-PA, AAEL000646-PA
Anopheles gambiae AGAMB AGAP029716-PA, AGAP012414-PA, AGAP011984-PA, AGAP029718-PA

Gene tree

Expression profile for this gene

Gene-level expression profile

Raw TPM values

Expression profile of isoforms

A heatmap representing isoforms with TPM > 0 in at least one sample. Expression profiles were are clustered based on the spearman correlation