Gene loci information

Transcript annotation

  • This transcript has been annotated as Filamin-A.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_3 g689 g689.t1 isoform g689.t1 5253482 5271163
chr_3 g689 g689.t1 exon g689.t1.exon1 5253482 5253616
chr_3 g689 g689.t1 cds g689.t1.CDS1 5253482 5253616
chr_3 g689 g689.t1 exon g689.t1.exon2 5253677 5257171
chr_3 g689 g689.t1 cds g689.t1.CDS2 5253677 5257171
chr_3 g689 g689.t1 exon g689.t1.exon3 5257315 5257575
chr_3 g689 g689.t1 cds g689.t1.CDS3 5257315 5257575
chr_3 g689 g689.t1 exon g689.t1.exon4 5257634 5257782
chr_3 g689 g689.t1 cds g689.t1.CDS4 5257634 5257782
chr_3 g689 g689.t1 exon g689.t1.exon5 5259106 5259326
chr_3 g689 g689.t1 cds g689.t1.CDS5 5259106 5259326
chr_3 g689 g689.t1 exon g689.t1.exon6 5259382 5259572
chr_3 g689 g689.t1 cds g689.t1.CDS6 5259382 5259572
chr_3 g689 g689.t1 exon g689.t1.exon7 5259636 5259803
chr_3 g689 g689.t1 cds g689.t1.CDS7 5259636 5259803
chr_3 g689 g689.t1 exon g689.t1.exon8 5259863 5260524
chr_3 g689 g689.t1 cds g689.t1.CDS8 5259863 5260524
chr_3 g689 g689.t1 exon g689.t1.exon9 5266733 5266900
chr_3 g689 g689.t1 cds g689.t1.CDS9 5266733 5266900
chr_3 g689 g689.t1 exon g689.t1.exon10 5266960 5267632
chr_3 g689 g689.t1 cds g689.t1.CDS10 5266960 5267632
chr_3 g689 g689.t1 exon g689.t1.exon11 5267815 5269434
chr_3 g689 g689.t1 cds g689.t1.CDS11 5267815 5269434
chr_3 g689 g689.t1 exon g689.t1.exon12 5269494 5269744
chr_3 g689 g689.t1 cds g689.t1.CDS12 5269494 5269744
chr_3 g689 g689.t1 exon g689.t1.exon13 5269808 5270207
chr_3 g689 g689.t1 cds g689.t1.CDS13 5269808 5270207
chr_3 g689 g689.t1 exon g689.t1.exon14 5270930 5271163
chr_3 g689 g689.t1 cds g689.t1.CDS14 5270930 5271163
chr_3 g689 g689.t1 TSS g689.t1 NA NA
chr_3 g689 g689.t1 TTS g689.t1 NA NA

Sequences

>g689.t1 Gene=g689 Length=8628
ATGATGGAATTACCGAAAGGAGCAAAAATTACACACACTGGTTTAATGCAGCACAATGCT
GATGGCACTACAGATATTCAAAAAATTACACAAGCGGGCTTAGTGGCACGTTCACCAGAA
GGAACTGCCGCAAAAGGAATGAATATTCGTGGAAATGAGGATTTATGGGTCGAAATTCAA
GCTAATACATTTAGAAATTGGGTTAATGAACATTTACGCGATGTTGGAATGCAAGTTACC
GATTTGTCAGTTGACTTTTGTGATGGCACACACCTTTGTGCATTGGTTGAATCATTGCAG
AAACGAAAATTAAAGCCATCATGGAATAAAAGACCACAGAATCAACATCACTATTTAGAA
AATGCCACAACCGCACTTAATGCCATCGAAGCTGATCACATTAAACTTGTAAACATTGGC
AATGTCGACATCGTCAATGGCAATTTGAAACTTATCCTCGGGCTCATATGGTCACTAATT
GTACGCTATCAAATTGGCAGAAGTAAATTCCCGCCGAGAAAATTGATGTTAGCATGGCTT
CAGGCTGCTCTACCTGAATGTCGAGTAACAAATCTCACAACTGACTGGAACAGTGGTGTT
TTACTTTCAGCATTGCTAGATTATTGCGAACCAGGTCTATTCCCACACTGGCGTTCGCTC
GATCCAAATCAATCTGTACGTAATTGTGAGAATGCAATGAATATTGCTCATAGAACATTC
GGTGTGCCAAAGGTCCTCGAACCTGAATACCTTGCATCTCCATGGCTCGATGAGTTATCT
GGAATGACTTATTTATCATATTTCATGAAACCTGATGGTCCAGGGTACAATGCATCAATG
CGATGGGTAAACAGTCAAATTAAAGTGCCAGTTCATAATTTTACGTCTGATTGGAATGAT
GGTCGTGTATTTTGTGAAATAATAAAAGGTTTAGGAGGAAATGCACCAGCACCTGAAAAA
GTAAGTCGAGATCCAGCAATGTGGGAAAGCAATATGAAAAAGGCAATGGATGCTGGAAAT
CGTTTTGGAATTAAACCTGTGCTTTCACCTAAAGATATGACAAGTCCTGATGTTGAACAT
CTTGCAATTATGGCTTATGCAACACATTTACAATGGGTTCAACCTCGACCTCCACTTGCT
GACATGATTGCTGTTCATTTGCAAAGCACAAGCGGAAGAGTTGCTGAACCAACTTATTTC
CGTATTGATGTGCTATCAAAGGACGTTGATCCAGCTAAAATGAAAGTTTATGTTGTTGCA
CCACATGACAAAGGAGTTGCAACTCTTATATCATTAAATAAACATGGTGAAGGAACTTTC
ATTCCCGATATTTATGGAATGCACGAAATTCTTGTTGAAATTGGTGACGATCGAATTGGT
GGACATTTTTTCCGTGTTATGCCAAGATTTATTCAAGTTAAACCACCAGGAATGGCACCA
TGTGCTTTAGGCAGTTTGGTTGAAGTTCTTGTTAATGCAACAGGGGCACCACGCTCTGAA
GATATTCTTGTTACTGCTTATTCACCATCTGGACGTCCATTAAAATGTCCACTAAAGAAA
GTCGATGAAGGACATAGTGCCATTTTTAAACCAGATGAAGCAGGCATTTGGGAAATTGCA
ATAACTTATCAAGGAAATCATATTCAAGGAAGTCCCTATACATGCTCAGTTTTTGATCCA
AGTGGTGTCTCTGTGCATGGATTAGATGGCGCCATGCCATTCAAAGCACATGCTTTTGAC
ATTGATGCACGTGGTGTTGGTGTTACGGGTGAGCTGCATGTTGACATTGTTTGTGAGAAG
CGTTCAGTTGTGTGTGCAGTTGAAAAGTTGGTTGAAAATAAATATCGTGTGACGTTCATG
CCGCGTCAAAATGGAAAACATCGAGTCTACATTTATTTCAATGGCTATGATGTTCGTGGA
TCTCCATTTATAATGAGAGTTGGAACTAAAGGTCGTTCCGGTAAAACGCGTAGCAGTCCA
AGTCACGAAAGTTCACGCTATCGTTCGGAAAGTCCATCGATGCACTTCAATACTTCAATG
TTGAAAAATGAAAGTGTTAGACGTGAACTTTATTCGCCTCAAAATGTCCAAAAAGCTGGT
TCATATTCTCCTCAATTGTCACCTTCATATGACAATGATCGTTATGAAATAAAAACTAGC
AAAGAAGTTTATTCATCACCAAGATTGAAGTCACCATCACCAACTCGAATTGGTTCACCT
GGAAGAGATCTTTACAGTCCAAAATTAGTTGATGAACAGCAACATCACGGTTATTCGACA
GTCTATAAAAGTGAATTTAGAAAAGAAATTCGAAAGAGTCAAAGTCCTTCTTTAGATTTT
GGAAGTCGCGATACAACTGATTTTTATACCAAGAAAAATGTCTCAAAGACAAATTTGACA
AAAGATGAAGGACTTTATAGCACTTCTTATTACTCGAAATTGAAAAATGATTCGAATTAT
GGGAGGAAAAGTGATTCACCAATTTTAATGTCAAGTCCAATAAATATGCGTTCAAGTCCA
GTTGTAAGAAGTCCATTGACAGTGAATACTTCATATGAAAGACGAGCAACTAGTCCAAGA
AATTTTACTTCATCGCCATCACCACGTTTGACAAGTGAATCACCAGTTCGTACTTTGCTC
AATACATCAACTTCAGCAACTTCTAATTCAGCATCGAAATTGAATTCTGAAACTTATCGT
GTTACACAGCATACATATCGATCATCAGTTAATCAGAATGCTAGTCCAGTTCCACCATTT
AAAACTTCTATTATTGATGGTGTTGATTATTCTTCAAATATTTCACCAATCAAACCTGGT
GCAGGTCGTAGAGATAGTTGGGATGTTTTGAATAAAACTAAACACATGTTTTCAAATAAT
TCACTTGAATCACTTGCAAAATTAACAGAAGAACAATTGGATACAAATTTATCATATGAC
CGATCAGCTGTTGACAATGAAACACACACAAATACGCAATTTAATAAATTTTCGTTATCA
GATTCTTCCTATAAAGAACGTAATGAAAAATATATCACAAAAACCAGCTCAAATGATTAT
GGATATTCACCATCATCATCAAAATTCCTACCAATTGGTGATGATGTTGAAGGAGCAAAA
GCAATAAAAGTTACCAATAAACCTGATGGATTTTTAGGGCAACCATTTGAATTTGAAATT
GATGGTTCGCGTGCAGGTTCAGGAAATTTGGAAATCTTAGTCAATGGTGGTCGCGTGACA
TCTTCAGTTCGAGCACTTGGTGGTCAACGATTTGTAGCAAGCTTCACACCACACGAAACT
GGCATTCATACTGTTCAAATCACATTTAATGGCGAAACTGTACCTGGATCACCCTGGCAA
ATTGACATCATGCCTTCATCACCTGGAATCACAGCATTAGGCGAATCAACTCGCTTAGTT
CCCGCTAATCAACCGGCGGTTTTTGAGATACTGCCGCCTCCTGGCACGTCCTTAAGGACA
TCTGATTGTGTTGCGACTGTGCTCTCGCCAAGTAAGAGTAAAGTCAATGCACGAATCACC
AACGAGGCGGCAAGTGCAAACGGTGCCATGCGTATTGAATTTACACCATTAGAAGTTGGA
ACACATATTATTGAAGCATCTATCAATGGCACAAAAATTATCGGCGGTCCATTGATTGCA
AAAGTTTACGATTCAAGTCTCATTCAAGTGACGGATGTTAATAGCGGAATTGTCGGTCAA
GCATGTCAATTTAGAGTCGATGCATCAGCTGCAGGCGAAGGTCAATTAGAAATTTCAATA
AATGACGGTGAAGTGCCAAATCATGTGCAAGTTGTAGGTGGGGGACGATGTCTAGTTTCA
TTTACACCTGAACAAGCTAAACCGCATTTGATTGACATAAAATTTAATGGCGAAACAGTT
AGAGGATGCCCATTTATTTGTTCTGTAGCTGACACAAGTCGAGTGACTCTAAATTTGTCA
AATCTTGAACTTGTTCCTGTCAATCAACCTGCAACATTTTTAATAACTGTCAATGGCGGC
GGTGCAGCTGAATTGGCAGTAAGCGTACGAAGTACTCAAGGTGAGTTGCCTGTGCGCGTA
ACAGGCAACATTCACTCTGGTTTTACAGCTGAATTCACACCAACTTCAGTTGGTGCACAC
ACAATCAATGTCGATTATAATGGTTATCCAGTGCATGGAACACCTTTTGTATCGAAATCA
TATGATGCACGACGAGTTGAAGTTGGAGCTGTTACAAAAGGCTCTGTTGGTCGTGCAGTG
CAATTTACAGTTGATGCACATGAAGCTGGTGAAGGAAATTTAGAAATTACAATATCAGCA
AAAGGACACAACATTCCAACACAAGTTCATCCACAAGGAAATGCCAAATTTTTAGTATCA
TTTGTGCCAGCTGAAGCTTGTGAGCATGTCATCAATGTGTCCTTCAATAAAATGCCCGTT
CCTGGCTGTCCAATAAATGTTCAAGTCAGTGGAAATGCATCTGGTCCTCAAGTTTCATTA
AATGGTCCTGGTCCAGTTCATGTGCCTAATTCACTCGTAATCAATCATGCTGGAGGACGA
TTAGACGATGTTGAAGTCAATGTTGAAGGACCAACTGGGCATTCGATTCCGGCACAAGTT
TTACAAACTGCTGATGGTGTTTTCAAAGCTGAATTTGTGCCAAGAATGGTTGGTGAACAT
CGCGTTAGTGTGACAGTTCAAGGAAAACCAACTGCTGGAAGTCCATATTCCGCTAAGGTT
TATGACGTTGGTGCAATTAAAGCAAAAAATGTGCTGTGTGGAACTGTCGGGCGACCTGTA
ACTTTTCTAGTTGAAACAGCACAAGCTGGACCTGGAAATCTCGAAGTCACGGTTAACGAT
GGACGAGTACCAACATCGGCTCAAGCACAGGGATTGCATACTTATGCTATCTCATTCACA
CCTCGTGATGCTCAAAATCATACGGTTGAGTTGAGATTTAATGGGCAAGATGTGCCTGGC
AGCCCTTTCACATGCAAGATCATGTCAGCAGCTAGAATTCTCAATCTTGATTCACTTGAC
AAACTTGCAGTCGATCAATATTTTGAATTTTTTGTCGAATCAAATGTTGAACCTATTGCT
GAGATTCTTGGACCATCACGACGTATTGTGCCAGTCACGATTGAAGAAGTTTTAAGTCGA
AATGGCTACATGATAAAATTCAAACCAATTGACGTTGGCGATCATTCGGTTGAAGTTCGT
TTACCTGGAAATGATGGTCATGTTGAAGGAAGTCCATTCTTATTGAAAGCTTACTCAGCT
GAAAAAGTTATTGTTTCTGACATTAAAAATGGAATTGTTGGTAAAAGTATAAACTTTAGT
ATTGATGCATCACGAGCTGGAGCTGGAAATTTGGAAATTATTGTGGCAGTTGGTGGAAAA
AATGTTCCAAATTTTGTCACATCAGAAGGAAATGCAAGATTTAAAGTCAATTTCAAACCA
ACAGAAGCAGCAAAACATTCACTATCAGTAAGATTTAATGGTCATCCTGTGCCAGGTTCA
CCTTTTACATGCACAATTTCACCATTGCCTCTTTTATCATCAATGAAAGCAATGGCTAGT
GGCGAAGCTTTGAGACAAGCTCCAGTTAATGTTGACAATGTTTTTGAAGTTGAAGGTTTT
GAAGGAATTGAGCCACAAATTTATATCACAAGTCCAGCAGGTGACAATTTGCCATGCAAA
TTAACACTTCGAGATGAAGTTTGGCTTGTTGCTTTTAAACCAATAATTGTTGGTCGTCAT
TTAATAAGTGTCTCAAGTGGTGAACAACACATTGCAGGTTCACCATTCAGCTGCAATGTT
TTCGATACTTCACGAGTTGCAATCAGTGGCTTAAATCAAATTTCTCCTGCACCATTAGGA
GTTCCAATTACATTTTCAGTCGATGCAGCAGGTGCTGGTGAAGGAACACTTGAATTAGTT
GTGTCAACTGCTAAAAATACAGTCAAAGCTGAAGTAACTGCTTGTGCTCGTGGTTTATAT
GATGTTACTTTTGTGCCACAAACTGCAGAACCACATTTCGTCAATATTACATTCAATGAC
ATTTCAATTGAAGGAAATCCATTTAAAGTTGATATTCAACAAAGTGTGCAAAATGTTCAA
TCAGGTAACCCCGCTGTAGTTGATTTAATTGGTGATGATTATAGTTTAGAAGTTATTGGA
CCTACACAAAAAATTATTCCATATACGACAATAAGTAAACGTAAAGCAGAATTTAAAACA
TTTGAAATTGGAAGTTATACAATAAGATTTATCGATCGAGAAACACGTAGTGTTGTTAGC
ACTCGCAATATCAATGTTTTCAATGCATCAATGGTGAAAATTGTTGAAGTTGGGCAAGCT
CATTGTAATCAACCAGCAACAATTTCTGTGTCAATTGCAGAAGCTGGTGTGGGAACACTT
TCAGCTCTTGTGAAATGTGGTGCATTAGAGGTCGCTCATTCTATTCGTCAATCAAAGAAT
TCATTGTGGGAAGTTGTCTATCATCCAACAAGAATTGCACCACATAAAGTCACACTTATG
TTCAATGGCATACCGATTTCAACTAAACCCATTGAAATTATTGTTATGCCTACGACAGTT
GGAAAAGAAATTTGTGTGCATGGACTTGGTCTTTATCAAGCGAGAGTTGGTAAAACTACT
TCTTTTGCAATTGATACAAATGGTAGACCTGCTAGAGAATTCGATGTCGTTGTTTCCGGT
CCTGGAGGTCAAGCTTTGCCTGTTCGTTGTTATCAAACTAAAGGTGGACATTTGCAAGCT
GAATTTACTGTCCTTAAGCCTGGCAAATGTAAAATTGATGTACTACATAATTCAAAACCA
TTGCCAGGAAGTCCATTCACATGTGAGGCTTATGATTCAATGAAAGTTCAAGTCACAAAT
GTTCCAAAAACTGGACTTGCCATTAATCATCCCATTTCATTTGTACTCAATACTCGTGAA
GCAGGTGAAGCTGATGTTGATGTTGCCGTGCTTTCACCAACTGGTCAAAATGTTCCAGTT
AAAGTTTCAGTAAAAAGTGAAGATCAAAGATTCGTTGAATTTGTGCCAACAATGTCAGGT
CATTACAAATGCATTGTTCTATTTGGTGGTGAACAAGTCAAAATGCCATCAACATTTGCA
GTCTCATCAACATCACTCAAATCTGATGTTCGTGCTATTGGAAATGGTTTAGAAACTGCA
CATCGTGGCAAAGAAACTTCCTTTAGTGTTTTCTGTCCATCACCGCCAAATGTTCAAATT
GAACATATTGAAGGCAATGGCGAAAGAATTGAGCCAAAAGTTAAAATGCTTGGCAATAAT
GAATATAAAATAACTTATACAATTCTCTCAGTTGGTCGTTATGAAATTCGCGCAAGTTGC
CCTAATCGTGGACCACTGCCTGGCTCGCCTTGGAATGTCTGTTGTGTTGATAGCAATAAA
GTTGTTCCATCAAATGGTTGGAGTTCTTATCTCGATAGTGAAGGACGTTTGATTTTGCCT
GCAAAAATAACTTTTGAAGCTGCTGATGCAGGACCTGGTGAACTCATATGCACAATTGAT
GGCAATGAAGTTAATGTTGAAAAATTATCGGAAGGAAAATTCAAAGTTTATATTCCAGCA
GATAATTTATCAGCTGGTGATCATGATTTTGATTTATCATGGAGTGGAATGTCAATTGTC
AATTGTCCAATAACTGCATTTGTTACATCACAACAAGCAGCAGATAAAGTTAGTCTCACA
GGTCGTGGCTTATCATCAGCACAAATTGGTGAAGCTGCTCATTTTACAATTGATGCAACA
CAAGTCATTCCAGCTGGAGGAAAACCAGAAGTTACAGTAACATATCAAGATGGTTTTTCT
ATTCCTGTCACACTCAATCAACCAAGACCAGATGAACCAATTTGGCTTGCATCTTATACA
CCACCAAAATCATCACAAGGACCTTTGAATCTTAATGTCAAATGGGGTGGAAAAATTATC
AAAGGTTGTCCATTCAGTATCACAGTTGGATCTTCAGTTGATGCCAGTAAAGTAAAATGT
TCTGGTGAAGGTTTACGACATGGTGTTGTTGGTCAACAAATAAAATCTTGGATTGATACA
AGAAGAGCTGGACCTGGTGAATTGACAGCTCATTGCACTGGACCAAGAAAAGTTGCTTAT
TGTGAACTTTATGATCATGGTGATGCAACTTTCACACTTAATATCAAACCACAAGAACCA
GGAAGACATTTATTGACAATCAAATATGGCGGTCAGCATGTTCCAGGCTCACCGTTCGCT
TTACGAGTTGTCGGAGCTCCTGATGCAAGTAAAGTCAGAGTTTATGGTCCTGGTATTGAG
CATGGCGTATTGGCAACTTTCCAATCAAGATTTATTTGTGACACACGTGGTGCTGGTGCA
GGTCAATTGACTGTCAGAGTTAGAGGACCAAAAGGAGCTTTCCGTGTTGAAATGCAAAGA
GAATCACAAAAAGATCGAACAATCTTATGCAAATATGACCCAACAGAACCAGGTGATTAT
CGAGTCGAAGTAAGATGGGCAGGAGAATTAGTGCCAGGCTCACCTTTCCCTGTTATGATT
TTTGACACTCAACAAGAGTTGAAACGATTTTTGGCCATTGAACCATAA

>g689.t1 Gene=g689 Length=2875
MMELPKGAKITHTGLMQHNADGTTDIQKITQAGLVARSPEGTAAKGMNIRGNEDLWVEIQ
ANTFRNWVNEHLRDVGMQVTDLSVDFCDGTHLCALVESLQKRKLKPSWNKRPQNQHHYLE
NATTALNAIEADHIKLVNIGNVDIVNGNLKLILGLIWSLIVRYQIGRSKFPPRKLMLAWL
QAALPECRVTNLTTDWNSGVLLSALLDYCEPGLFPHWRSLDPNQSVRNCENAMNIAHRTF
GVPKVLEPEYLASPWLDELSGMTYLSYFMKPDGPGYNASMRWVNSQIKVPVHNFTSDWND
GRVFCEIIKGLGGNAPAPEKVSRDPAMWESNMKKAMDAGNRFGIKPVLSPKDMTSPDVEH
LAIMAYATHLQWVQPRPPLADMIAVHLQSTSGRVAEPTYFRIDVLSKDVDPAKMKVYVVA
PHDKGVATLISLNKHGEGTFIPDIYGMHEILVEIGDDRIGGHFFRVMPRFIQVKPPGMAP
CALGSLVEVLVNATGAPRSEDILVTAYSPSGRPLKCPLKKVDEGHSAIFKPDEAGIWEIA
ITYQGNHIQGSPYTCSVFDPSGVSVHGLDGAMPFKAHAFDIDARGVGVTGELHVDIVCEK
RSVVCAVEKLVENKYRVTFMPRQNGKHRVYIYFNGYDVRGSPFIMRVGTKGRSGKTRSSP
SHESSRYRSESPSMHFNTSMLKNESVRRELYSPQNVQKAGSYSPQLSPSYDNDRYEIKTS
KEVYSSPRLKSPSPTRIGSPGRDLYSPKLVDEQQHHGYSTVYKSEFRKEIRKSQSPSLDF
GSRDTTDFYTKKNVSKTNLTKDEGLYSTSYYSKLKNDSNYGRKSDSPILMSSPINMRSSP
VVRSPLTVNTSYERRATSPRNFTSSPSPRLTSESPVRTLLNTSTSATSNSASKLNSETYR
VTQHTYRSSVNQNASPVPPFKTSIIDGVDYSSNISPIKPGAGRRDSWDVLNKTKHMFSNN
SLESLAKLTEEQLDTNLSYDRSAVDNETHTNTQFNKFSLSDSSYKERNEKYITKTSSNDY
GYSPSSSKFLPIGDDVEGAKAIKVTNKPDGFLGQPFEFEIDGSRAGSGNLEILVNGGRVT
SSVRALGGQRFVASFTPHETGIHTVQITFNGETVPGSPWQIDIMPSSPGITALGESTRLV
PANQPAVFEILPPPGTSLRTSDCVATVLSPSKSKVNARITNEAASANGAMRIEFTPLEVG
THIIEASINGTKIIGGPLIAKVYDSSLIQVTDVNSGIVGQACQFRVDASAAGEGQLEISI
NDGEVPNHVQVVGGGRCLVSFTPEQAKPHLIDIKFNGETVRGCPFICSVADTSRVTLNLS
NLELVPVNQPATFLITVNGGGAAELAVSVRSTQGELPVRVTGNIHSGFTAEFTPTSVGAH
TINVDYNGYPVHGTPFVSKSYDARRVEVGAVTKGSVGRAVQFTVDAHEAGEGNLEITISA
KGHNIPTQVHPQGNAKFLVSFVPAEACEHVINVSFNKMPVPGCPINVQVSGNASGPQVSL
NGPGPVHVPNSLVINHAGGRLDDVEVNVEGPTGHSIPAQVLQTADGVFKAEFVPRMVGEH
RVSVTVQGKPTAGSPYSAKVYDVGAIKAKNVLCGTVGRPVTFLVETAQAGPGNLEVTVND
GRVPTSAQAQGLHTYAISFTPRDAQNHTVELRFNGQDVPGSPFTCKIMSAARILNLDSLD
KLAVDQYFEFFVESNVEPIAEILGPSRRIVPVTIEEVLSRNGYMIKFKPIDVGDHSVEVR
LPGNDGHVEGSPFLLKAYSAEKVIVSDIKNGIVGKSINFSIDASRAGAGNLEIIVAVGGK
NVPNFVTSEGNARFKVNFKPTEAAKHSLSVRFNGHPVPGSPFTCTISPLPLLSSMKAMAS
GEALRQAPVNVDNVFEVEGFEGIEPQIYITSPAGDNLPCKLTLRDEVWLVAFKPIIVGRH
LISVSSGEQHIAGSPFSCNVFDTSRVAISGLNQISPAPLGVPITFSVDAAGAGEGTLELV
VSTAKNTVKAEVTACARGLYDVTFVPQTAEPHFVNITFNDISIEGNPFKVDIQQSVQNVQ
SGNPAVVDLIGDDYSLEVIGPTQKIIPYTTISKRKAEFKTFEIGSYTIRFIDRETRSVVS
TRNINVFNASMVKIVEVGQAHCNQPATISVSIAEAGVGTLSALVKCGALEVAHSIRQSKN
SLWEVVYHPTRIAPHKVTLMFNGIPISTKPIEIIVMPTTVGKEICVHGLGLYQARVGKTT
SFAIDTNGRPAREFDVVVSGPGGQALPVRCYQTKGGHLQAEFTVLKPGKCKIDVLHNSKP
LPGSPFTCEAYDSMKVQVTNVPKTGLAINHPISFVLNTREAGEADVDVAVLSPTGQNVPV
KVSVKSEDQRFVEFVPTMSGHYKCIVLFGGEQVKMPSTFAVSSTSLKSDVRAIGNGLETA
HRGKETSFSVFCPSPPNVQIEHIEGNGERIEPKVKMLGNNEYKITYTILSVGRYEIRASC
PNRGPLPGSPWNVCCVDSNKVVPSNGWSSYLDSEGRLILPAKITFEAADAGPGELICTID
GNEVNVEKLSEGKFKVYIPADNLSAGDHDFDLSWSGMSIVNCPITAFVTSQQAADKVSLT
GRGLSSAQIGEAAHFTIDATQVIPAGGKPEVTVTYQDGFSIPVTLNQPRPDEPIWLASYT
PPKSSQGPLNLNVKWGGKIIKGCPFSITVGSSVDASKVKCSGEGLRHGVVGQQIKSWIDT
RRAGPGELTAHCTGPRKVAYCELYDHGDATFTLNIKPQEPGRHLLTIKYGGQHVPGSPFA
LRVVGAPDASKVRVYGPGIEHGVLATFQSRFICDTRGAGAGQLTVRVRGPKGAFRVEMQR
ESQKDRTILCKYDPTEPGDYRVEVRWAGELVPGSPFPVMIFDTQQELKRFLAIEP

Protein features from InterProScan

Transcript Database ID Name Start End E.value
69 g689.t1 CDD cd00014 CH 59 164 1.85368E-23
70 g689.t1 CDD cd00014 CH 171 270 1.03058E-11
68 g689.t1 Gene3D G3DSA:1.10.418.10 - 48 166 7.9E-39
67 g689.t1 Gene3D G3DSA:1.10.418.10 - 167 273 1.7E-29
66 g689.t1 Gene3D G3DSA:1.10.418.10 - 274 380 1.1E-20
50 g689.t1 Gene3D G3DSA:2.60.40.10 Immunoglobulins 468 562 1.6E-12
46 g689.t1 Gene3D G3DSA:2.60.40.10 Immunoglobulins 563 659 4.3E-15
56 g689.t1 Gene3D G3DSA:2.60.40.10 Immunoglobulins 1044 1130 2.0E-14
64 g689.t1 Gene3D G3DSA:2.60.40.10 Immunoglobulins 1131 1227 4.1E-9
59 g689.t1 Gene3D G3DSA:2.60.40.10 Immunoglobulins 1228 1311 1.8E-16
55 g689.t1 Gene3D G3DSA:2.60.40.10 Immunoglobulins 1312 1401 5.5E-16
51 g689.t1 Gene3D G3DSA:2.60.40.10 Immunoglobulins 1402 1493 1.7E-18
61 g689.t1 Gene3D G3DSA:2.60.40.10 Immunoglobulins 1494 1588 2.6E-16
62 g689.t1 Gene3D G3DSA:2.60.40.10 Immunoglobulins 1589 1674 1.5E-17
57 g689.t1 Gene3D G3DSA:2.60.40.10 Immunoglobulins 1675 1761 1.7E-7
58 g689.t1 Gene3D G3DSA:2.60.40.10 Immunoglobulins 1772 1848 1.1E-17
63 g689.t1 Gene3D G3DSA:2.60.40.10 Immunoglobulins 1853 1945 2.3E-12
52 g689.t1 Gene3D G3DSA:2.60.40.10 Immunoglobulins 1946 2046 4.3E-17
53 g689.t1 Gene3D G3DSA:2.60.40.10 Immunoglobulins 2077 2108 1.7E-8
54 g689.t1 Gene3D G3DSA:2.60.40.10 Immunoglobulins 2109 2193 1.7E-8
60 g689.t1 Gene3D G3DSA:2.60.40.10 Immunoglobulins 2199 2292 3.5E-19
65 g689.t1 Gene3D G3DSA:2.60.40.10 Immunoglobulins 2293 2383 9.5E-15
49 g689.t1 Gene3D G3DSA:2.60.40.10 Immunoglobulins 2384 2485 7.3E-10
47 g689.t1 Gene3D G3DSA:2.60.40.10 Immunoglobulins 2568 2671 2.0E-16
45 g689.t1 Gene3D G3DSA:2.60.40.10 Immunoglobulins 2672 2764 6.4E-27
48 g689.t1 Gene3D G3DSA:2.60.40.10 Immunoglobulins 2765 2870 9.8E-30
93 g689.t1 MobiDBLite mobidb-lite consensus disorder prediction 647 678 -
95 g689.t1 MobiDBLite mobidb-lite consensus disorder prediction 693 712 -
96 g689.t1 MobiDBLite mobidb-lite consensus disorder prediction 719 741 -
94 g689.t1 MobiDBLite mobidb-lite consensus disorder prediction 840 876 -
14 g689.t1 PANTHER PTHR38537 JITTERBUG, ISOFORM N 56 275 0.0
20 g689.t1 PANTHER PTHR38537 JITTERBUG, ISOFORM N 280 423 0.0
16 g689.t1 PANTHER PTHR38537 JITTERBUG, ISOFORM N 392 653 0.0
19 g689.t1 PANTHER PTHR38537 JITTERBUG, ISOFORM N 1040 1871 0.0
15 g689.t1 PANTHER PTHR38537 JITTERBUG, ISOFORM N 1901 2058 0.0
18 g689.t1 PANTHER PTHR38537 JITTERBUG, ISOFORM N 2077 2383 0.0
21 g689.t1 PANTHER PTHR38537 JITTERBUG, ISOFORM N 2375 2601 0.0
17 g689.t1 PANTHER PTHR38537 JITTERBUG, ISOFORM N 2490 2858 0.0
11 g689.t1 Pfam PF00307 Calponin homology (CH) domain 60 164 7.3E-21
12 g689.t1 Pfam PF00307 Calponin homology (CH) domain 172 270 1.6E-14
13 g689.t1 Pfam PF00307 Calponin homology (CH) domain 279 372 3.0E-10
7 g689.t1 Pfam PF00630 Filamin/ABP280 repeat 565 643 1.5E-6
4 g689.t1 Pfam PF00630 Filamin/ABP280 repeat 1231 1305 4.7E-7
5 g689.t1 Pfam PF00630 Filamin/ABP280 repeat 1401 1485 1.7E-9
3 g689.t1 Pfam PF00630 Filamin/ABP280 repeat 1522 1576 4.8E-7
6 g689.t1 Pfam PF00630 Filamin/ABP280 repeat 1595 1664 5.3E-6
8 g689.t1 Pfam PF00630 Filamin/ABP280 repeat 1758 1843 7.5E-10
1 g689.t1 Pfam PF00630 Filamin/ABP280 repeat 1944 2029 7.4E-7
9 g689.t1 Pfam PF00630 Filamin/ABP280 repeat 2201 2287 3.0E-7
2 g689.t1 Pfam PF00630 Filamin/ABP280 repeat 2673 2759 8.0E-13
10 g689.t1 Pfam PF00630 Filamin/ABP280 repeat 2767 2856 1.1E-14
71 g689.t1 ProSitePatterns PS00019 Actinin-type actin-binding domain signature 1. 60 69 -
98 g689.t1 ProSiteProfiles PS50021 Calponin homology (CH) domain profile. 58 164 23.213
97 g689.t1 ProSiteProfiles PS50021 Calponin homology (CH) domain profile. 170 273 15.896
99 g689.t1 ProSiteProfiles PS50021 Calponin homology (CH) domain profile. 274 375 6.739
108 g689.t1 ProSiteProfiles PS50194 Filamin/ABP280 repeat profile. 387 468 9.876
102 g689.t1 ProSiteProfiles PS50194 Filamin/ABP280 repeat profile. 471 557 16.822
107 g689.t1 ProSiteProfiles PS50194 Filamin/ABP280 repeat profile. 567 647 16.965
109 g689.t1 ProSiteProfiles PS50194 Filamin/ABP280 repeat profile. 1021 1123 20.212
100 g689.t1 ProSiteProfiles PS50194 Filamin/ABP280 repeat profile. 1130 1222 13.842
110 g689.t1 ProSiteProfiles PS50194 Filamin/ABP280 repeat profile. 1233 1309 17.623
101 g689.t1 ProSiteProfiles PS50194 Filamin/ABP280 repeat profile. 1307 1400 21.794
117 g689.t1 ProSiteProfiles PS50194 Filamin/ABP280 repeat profile. 1410 1489 20.253
113 g689.t1 ProSiteProfiles PS50194 Filamin/ABP280 repeat profile. 1493 1574 16.02
116 g689.t1 ProSiteProfiles PS50194 Filamin/ABP280 repeat profile. 1570 1667 21.507
118 g689.t1 ProSiteProfiles PS50194 Filamin/ABP280 repeat profile. 1700 1757 13.883
112 g689.t1 ProSiteProfiles PS50194 Filamin/ABP280 repeat profile. 1768 1846 21.219
103 g689.t1 ProSiteProfiles PS50194 Filamin/ABP280 repeat profile. 1849 1940 15.321
106 g689.t1 ProSiteProfiles PS50194 Filamin/ABP280 repeat profile. 1938 2032 21.794
119 g689.t1 ProSiteProfiles PS50194 Filamin/ABP280 repeat profile. 2096 2195 13.39
114 g689.t1 ProSiteProfiles PS50194 Filamin/ABP280 repeat profile. 2196 2290 20.089
115 g689.t1 ProSiteProfiles PS50194 Filamin/ABP280 repeat profile. 2288 2373 16.76
111 g689.t1 ProSiteProfiles PS50194 Filamin/ABP280 repeat profile. 2382 2475 14.52
120 g689.t1 ProSiteProfiles PS50194 Filamin/ABP280 repeat profile. 2569 2669 15.178
105 g689.t1 ProSiteProfiles PS50194 Filamin/ABP280 repeat profile. 2670 2763 29.397
104 g689.t1 ProSiteProfiles PS50194 Filamin/ABP280 repeat profile. 2764 2860 30.918
74 g689.t1 SMART SM00033 ch_5 60 162 1.4E-19
72 g689.t1 SMART SM00033 ch_5 172 268 8.6E-13
73 g689.t1 SMART SM00033 ch_5 275 370 0.27
86 g689.t1 SMART SM00557 flmn_3 467 560 1.3E-9
90 g689.t1 SMART SM00557 flmn_3 561 650 3.7E-13
81 g689.t1 SMART SM00557 flmn_3 1038 1126 1.9E-14
83 g689.t1 SMART SM00557 flmn_3 1224 1312 1.1E-25
92 g689.t1 SMART SM00557 flmn_3 1313 1400 1.4E-10
80 g689.t1 SMART SM00557 flmn_3 1402 1492 2.4E-24
82 g689.t1 SMART SM00557 flmn_3 1494 1583 4.6E-13
91 g689.t1 SMART SM00557 flmn_3 1587 1670 1.2E-19
87 g689.t1 SMART SM00557 flmn_3 1759 1849 4.2E-25
84 g689.t1 SMART SM00557 flmn_3 1853 1943 2.3E-13
89 g689.t1 SMART SM00557 flmn_3 1947 2035 1.5E-12
79 g689.t1 SMART SM00557 flmn_3 2108 2198 5.9E-4
78 g689.t1 SMART SM00557 flmn_3 2200 2293 1.9E-22
76 g689.t1 SMART SM00557 flmn_3 2294 2384 1.5E-8
77 g689.t1 SMART SM00557 flmn_3 2386 2478 0.0032
88 g689.t1 SMART SM00557 flmn_3 2573 2672 6.4E-13
85 g689.t1 SMART SM00557 flmn_3 2674 2766 6.9E-35
75 g689.t1 SMART SM00557 flmn_3 2768 2863 9.1E-34
23 g689.t1 SUPERFAMILY SSF47576 Calponin-homology domain, CH-domain 48 269 1.6E-65
22 g689.t1 SUPERFAMILY SSF47576 Calponin-homology domain, CH-domain 280 376 2.23E-17
32 g689.t1 SUPERFAMILY SSF81296 E set domains 386 466 2.6E-5
27 g689.t1 SUPERFAMILY SSF81296 E set domains 468 562 3.0E-15
28 g689.t1 SUPERFAMILY SSF81296 E set domains 558 649 1.07E-13
36 g689.t1 SUPERFAMILY SSF81296 E set domains 1045 1125 3.34E-16
30 g689.t1 SUPERFAMILY SSF81296 E set domains 1131 1225 2.67E-9
25 g689.t1 SUPERFAMILY SSF81296 E set domains 1217 1313 3.0E-16
29 g689.t1 SUPERFAMILY SSF81296 E set domains 1311 1398 1.13E-14
35 g689.t1 SUPERFAMILY SSF81296 E set domains 1412 1502 2.14E-17
31 g689.t1 SUPERFAMILY SSF81296 E set domains 1499 1585 2.94E-17
34 g689.t1 SUPERFAMILY SSF81296 E set domains 1593 1669 5.47E-16
24 g689.t1 SUPERFAMILY SSF81296 E set domains 1679 1766 1.4E-7
39 g689.t1 SUPERFAMILY SSF81296 E set domains 1744 1848 2.34E-19
33 g689.t1 SUPERFAMILY SSF81296 E set domains 1856 1944 1.73E-12
37 g689.t1 SUPERFAMILY SSF81296 E set domains 1941 2033 2.14E-16
43 g689.t1 SUPERFAMILY SSF81296 E set domains 2104 2198 5.2E-11
38 g689.t1 SUPERFAMILY SSF81296 E set domains 2180 2295 4.6E-22
40 g689.t1 SUPERFAMILY SSF81296 E set domains 2291 2374 4.27E-13
44 g689.t1 SUPERFAMILY SSF81296 E set domains 2375 2479 3.0E-11
42 g689.t1 SUPERFAMILY SSF81296 E set domains 2552 2672 1.85E-15
26 g689.t1 SUPERFAMILY SSF81296 E set domains 2652 2767 1.93E-29
41 g689.t1 SUPERFAMILY SSF81296 E set domains 2756 2863 2.55E-26

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0005515 protein binding MF

KEGG

Orthology

Pathway

  • This transcript belongs to the following pathways

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.

Raw TPM values