Gene loci information

Isoforms of this gene

  • There are 2 isoforms that are expressed from this gene.
  • The longest transcript is g689.t1
  • List of isoforms

g689.t1, g689.t2

The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively.

KEGG

Orthology

Pathway

  • This gene belongs to the following 1 pathways
ko04010
ko04510
ko05132
ko05205

This gene has too many mapped pathways (>3). Please look at the original KEGG entry above for pathway visualization.

Gene conservation patterns

Diptera wide analysis

The Orthogroup for the longest transcript (g689.t1) is OG0001030. Other genes in this orthogroup contains the following. This list is ordered by phylogeny determined by OrthoFinder analysis. Genes from ENSEMBL are linked to their corresponding pages. For P. nubifer and P. vanderplanki, they are linked to the Midgebase1 and Midgebase2 pages.

Conservation

Organism Abb. ID No. Orthologs Ortholog ID
Atta cephalotes ACEPH 1 XP_012059185.1
Apis mellifera AMELL 2 GB42130-PA, GB51104-PA
Culicoides sonorensis CSONO 2 CSON004106-1, CSON002335-1
Polypedilum nubifer PNUBI 2 Pn.09641, Pn.09640
Polypedilum vanderplanki PVAND 1 g689.t1
Polypedilum pembai PPEMB 2 g14652.t1, g10925.t1
Belgica antarctica BANTA 1 IU25_03962-mRNA-1
Clunio marinus CMARI 1 CRL07142.1
Aedes aegypti lvpagwg AAEGYL 1 AAEL019576-PA
Culex quinquefasciatus quinquefasciatus CQUINQ 3 EDS28199.1, EDS28197.1, EDS28196.1
Culex quinquefasciatus CQUIN 3 CPIJ006589-PA, CPIJ006592-PA, CPIJ006590-PA
Anopheles atroparvus AATRO 2 AATE000144-PA, AATE012177-PA
Anopheles sinensis china ASINEC 1 ASIC021197-PA
Anopheles dirus ADIRU 2 ADIR003812-PA, ADIR003811-PA
Anopheles farauti AFARA 1 AFAF018836-PA
Anopheles epiroticus AEPIR 2 AEPI000625-PA, AEPI000624-PA
Anopheles christyi ACHRI 2 ACHR006355-PA, ACHR005394-PA
Anopheles merus AMERU 2 AMEM014922-PA, AMEM017197-PA
Anopheles melas AMELA 3 AMEC013843-PA, AMEC013122-PA, AMEC011415-PA
Anopheles arabiensis AARAB 1 AARA016849-PB
Anopheles coluzzii ACOLU 2 ACOM031426-PA, ACOM031425-PA
Anopheles coluzzii ngousso ACOLUN 1 ACON007006-PB
Anopheles gambiae AGAMB 1 AGAP007006-PA
Anopheles quadriannulatus AQUAD 2 AQUA001940-PA, AQUA001941-PA
Anopheles minimus AMINI 2 AMIN009990-PA, AMIN009991-PA
Anopheles culicifacies ACULI 3 ACUA010862-PA, ACUA014705-PA, ACUA000768-PA
Anopheles funestus AFUNE 1 AFUN020129-PA
Anopheles stephensi indian ASTEPI 2 ASTEI02840-PA, ASTEI02841-PA
Anopheles stephensi ASTEP 2 ASTE010465-PA, ASTE010464-PA
Anopheles albimanus AALBI 2 AALB004239-PA, AALB004238-PA
Anopheles darlingi ADARL 2 ADAC001324-PA, ADAC001329-PA
Drosophila willistoni DWILL 1 FBpp0374099
Drosophila pseudoobscura DPSEU 1 FBpp0276870
Drosophila persimilis DPERS 1 FBpp0174815
Drosophila ananassae DANAN 1 FBpp0346876
Drosophila melanogaster DMELA 1 FBpp0303267
Drosophila sechellia DSECH 2 FBpp0197088, FBpp0197089
Drosophila simulans DSIMU 1 FBpp0326576
Drosophila erecta DEREC 1 FBpp0372539
Drosophila yakuba DYAKU 1 FBpp0358292
Drosophila virilis DVIRI 1 FBpp0393683
Drosophila mojavensis DMOJA 0 none
Drosophila grimshawi DGRIM 1 FBpp0418176
Lucilia cuprina LCUPR 1 KNC32850
Musca domestica MDOME 1 MDOA008896-PB
Stomoxys calcitrans SCALC 2 SCAU002521-PA, SCAU006453-PC
Glossina brevipalpis GBREV 2 GBRI037319-PA, GBRI037310-PA
Glossina palpalis GPALP 3 GPPI048216-PA, GPPI045248-PA, GPPI000450-PA
Glossina austeni GAUST 2 GAUT035792-PA, GAUT035793-PA
Glossina pallidipes GPALL 2 GPAI027831-PA, GPAI027830-PA
Glossina morsitans GMORS 1 GMOY008660-PA

Gene tree

Chironomidae-wide analysis

The Orthogroup for the longest transcript (g689.t1) is OG0000757. Other genes in this orthogroup contains the following. [This data uses ab initio gene models predicted in Yoshida et al 2022, so most genes are not registered in public databases. Please contact the authors for more information on these data.]

Conservation

Organism Abb. ID Ortholog ID
Podonomus sp PODON TRINITY_DN645_c0_g1_i1.p1, TRINITY_DN10755_c0_g1_i1.p1, TRINITY_DN7148_c0_g1_i1.p1, TRINITY_DN84849_c0_g1_i1.p2
Parochlus steinenii PSTEI PSG08181
Trissopelopia nemorum TNEMO TRINITY_DN1042_c0_g1_i2.p1
Paraheptagyia tonnoiri PTONN TRINITY_DN7378_c0_g1_i1.p1, TRINITY_DN942_c0_g1_i1.p1, TRINITY_DN341_c0_g3_i1.p1
Telmatogeton pecinata TPECI TRINITY_DN756_c0_g3_i2.p1, TRINITY_DN0_c10248_g1_i1.p1, TRINITY_DN59649_c0_g1_i1.p1, TRINITY_DN0_c6866_g1_i2.p1, TRINITY_DN75624_c0_g1_i1.p1, TRINITY_DN486_c0_g7_i1.p1
Cricotopus draysoni CDRAY TRINITY_DN111577_c0_g1_i1.p1, TRINITY_DN102203_c0_g1_i1.p2, TRINITY_DN46719_c0_g1_i1.p1, TRINITY_DN59419_c0_g1_i1.p1, TRINITY_DN111577_c1_g1_i1.p1, TRINITY_DN3415_c0_g1_i1.p1
Clunio marinus CMARI CRL07142.1
Cardiocladius sp CARDI TRINITY_DN5510_c2_g1_i1.p2, TRINITY_DN17863_c1_g1_i1.p1
Belgica antarctica BANTA IU25_03962-mRNA-1
Kiefferophyes invenustulus KINVE TRINITY_DN928_c0_g1_i3.p1, TRINITY_DN56778_c0_g2_i5.p1, TRINITY_DN29693_c1_g1_i2.p1, TRINITY_DN928_c0_g3_i1.p1, TRINITY_DN29207_c0_g1_i1.p1, TRINITY_DN396_c0_g1_i17.p1, TRINITY_DN40515_c0_g1_i1.p1, TRINITY_DN165817_c0_g1_i1.p1, TRINITY_DN44807_c0_g1_i1.p1, TRINITY_DN40515_c1_g1_i1.p1, TRINITY_DN24229_c0_g1_i1.p1, TRINITY_DN242512_c0_g1_i1.p1
Chironomus riparius CRIPA g12226.t1, g4973.t1
Chironomus columbiensis CCOLU TRINITY_DN6095_c0_g1_i1.p1, TRINITY_DN1047_c1_g3_i1.p1, TRINITY_DN10875_c0_g1_i1.p1, TRINITY_DN1047_c1_g1_i3.p1, TRINITY_DN7741_c0_g1_i1.p1, TRINITY_DN16920_c0_g1_i3.p1
Chironomus tentans CTENT g14820.t1, g14686.t1, g15444.t1, g15367.t1, g12438.t1
Chironomus dilutus CDILU TRINITY_DN25293_c0_g1_i1.p1, TRINITY_DN1021_c1_g1_i9.p1
Polypedilum nubifer PNUBI Pn.09641, Pn.09640
Polypedilum vanderplanki PVAND g689.t1
Polypedilum pembai PPEMB g14652.t1, g3699.t1, g10925.t1
Culicoides sonorensis CSONO CSON004106-1, CSON002335-1
Aedes aegypti lvpagwg AAEGYL AAEL019576-PA
Anopheles gambiae AGAMB AGAP007006-PA

Gene tree

Expression profile for this gene

Gene-level expression profile

Raw TPM values

Expression profile of isoforms

A heatmap representing isoforms with TPM > 0 in at least one sample. Expression profiles were are clustered based on the spearman correlation