Chromosome | Gene | Transcript | Category | ID | Start | End |
---|---|---|---|---|---|---|
chr_2 | g7303 | g7303.t1 | TTS | g7303.t1 | 22847929 | 22847929 |
chr_2 | g7303 | g7303.t1 | isoform | g7303.t1 | 22848080 | 22849147 |
chr_2 | g7303 | g7303.t1 | exon | g7303.t1.exon1 | 22848080 | 22848182 |
chr_2 | g7303 | g7303.t1 | cds | g7303.t1.CDS1 | 22848080 | 22848182 |
chr_2 | g7303 | g7303.t1 | exon | g7303.t1.exon2 | 22848249 | 22848310 |
chr_2 | g7303 | g7303.t1 | cds | g7303.t1.CDS2 | 22848249 | 22848310 |
chr_2 | g7303 | g7303.t1 | exon | g7303.t1.exon3 | 22848386 | 22848511 |
chr_2 | g7303 | g7303.t1 | cds | g7303.t1.CDS3 | 22848386 | 22848511 |
chr_2 | g7303 | g7303.t1 | exon | g7303.t1.exon4 | 22848617 | 22848675 |
chr_2 | g7303 | g7303.t1 | cds | g7303.t1.CDS4 | 22848617 | 22848675 |
chr_2 | g7303 | g7303.t1 | exon | g7303.t1.exon5 | 22848744 | 22848824 |
chr_2 | g7303 | g7303.t1 | cds | g7303.t1.CDS5 | 22848744 | 22848824 |
chr_2 | g7303 | g7303.t1 | exon | g7303.t1.exon6 | 22848955 | 22849009 |
chr_2 | g7303 | g7303.t1 | cds | g7303.t1.CDS6 | 22848955 | 22849009 |
chr_2 | g7303 | g7303.t1 | exon | g7303.t1.exon7 | 22849085 | 22849147 |
chr_2 | g7303 | g7303.t1 | cds | g7303.t1.CDS7 | 22849085 | 22849147 |
chr_2 | g7303 | g7303.t1 | TSS | g7303.t1 | 22849846 | 22849846 |
>g7303.t1 Gene=g7303 Length=549
ATGGGAAACGTATTTGCTAATCTGTTCAAAGGTTTATTTGGTAAAAAGGAGATGAGAATA
TTGATGGTTGGTCTCGATGCTGCTGGTAAAACGACAATTTTATACAAGCTTAAATTAGGT
GAAATTGTAACTACAATCCCAACCATTGGCTTCAACGTTGAAACTGTAGAATACAAAAAT
ATTTCATTTACTGTTTGGGATGTTGGTGGTCAAGACAAAATCCGCCCACTCTGGAGACAT
TATTTCCAAAATACCCAAGGGCTTATCTTTGTCGTTGATAGTAATGACCGTGAGCGTGTT
GGTGAAGCTCGTGAAGAATTAATGAGAATGTTGGCTGAAGATGAATTGAGGGATGCTGTG
CTTTTAATTTTTGCCAACAAGCAGGATTTGCCCAATGCTATGAATGCAGCCGAAATCACA
GATAAATTAGGTCTTCACTCATTACGAAACCGAAGCTGGTATATTCAAGCAACGTGTGCA
ACCAGTGGAGATGGCCTCTATGAAGGTTTGGATTGGCTTTCGAATCAACTGAAGAACGCT
AACCGCTAA
>g7303.t1 Gene=g7303 Length=182
MGNVFANLFKGLFGKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN
ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVGEAREELMRMLAEDELRDAV
LLIFANKQDLPNAMNAAEITDKLGLHSLRNRSWYIQATCATSGDGLYEGLDWLSNQLKNA
NR
Transcript | Database | ID | Name | Start | End | E.value | |
---|---|---|---|---|---|---|---|
10 | g7303.t1 | CDD | cd04150 | Arf1_5_like | 18 | 176 | 0.0000 |
9 | g7303.t1 | Gene3D | G3DSA:3.40.50.300 | - | 18 | 177 | 0.0000 |
2 | g7303.t1 | PANTHER | PTHR11711 | ADP RIBOSYLATION FACTOR-RELATED | 1 | 180 | 0.0000 |
3 | g7303.t1 | PANTHER | PTHR11711:SF357 | ADP-RIBOSYLATION FACTOR 1 | 1 | 180 | 0.0000 |
4 | g7303.t1 | PRINTS | PR00328 | GTP-binding SAR1 protein signature | 19 | 42 | 0.0000 |
7 | g7303.t1 | PRINTS | PR00328 | GTP-binding SAR1 protein signature | 47 | 71 | 0.0000 |
5 | g7303.t1 | PRINTS | PR00328 | GTP-binding SAR1 protein signature | 74 | 99 | 0.0000 |
6 | g7303.t1 | PRINTS | PR00328 | GTP-binding SAR1 protein signature | 119 | 140 | 0.0000 |
1 | g7303.t1 | Pfam | PF00025 | ADP-ribosylation factor family | 7 | 176 | 0.0000 |
15 | g7303.t1 | ProSiteProfiles | PS51417 | small GTPase Arf family profile. | 11 | 177 | 25.3130 |
11 | g7303.t1 | SMART | SM00177 | arf_sub_2 | 1 | 181 | 0.0000 |
13 | g7303.t1 | SMART | SM00178 | sar_sub_1 | 1 | 177 | 0.0000 |
12 | g7303.t1 | SMART | SM00175 | rab_sub_5 | 18 | 180 | 0.0042 |
8 | g7303.t1 | SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 14 | 180 | 0.0000 |
14 | g7303.t1 | TIGRFAM | TIGR00231 | small_GTP: small GTP-binding protein domain | 16 | 158 | 0.0000 |
IUPRED3 score over 0.5 is predictive of a disordered region.
GOID | TERM | ONTOLOGY |
---|---|---|
GO:0005525 | GTP binding | MF |
TPM values are indicated as average +/- STDEV.
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.