General information for g7303.t12
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as ADP-ribosylation factor 1.
Parent gene
- The parent gene g7303 is located on chr_2: 22848898..22849864 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_2 | g7303 | g7303.t12 | TTS | g7303.t12 | 22846712 | 22846712 |
| chr_2 | g7303 | g7303.t12 | isoform | g7303.t12 | 22847492 | 22849864 |
| chr_2 | g7303 | g7303.t12 | exon | g7303.t12.exon1 | 22847492 | 22848182 |
| chr_2 | g7303 | g7303.t12 | cds | g7303.t12.CDS1 | 22848080 | 22848182 |
| chr_2 | g7303 | g7303.t12 | exon | g7303.t12.exon2 | 22848249 | 22848310 |
| chr_2 | g7303 | g7303.t12 | cds | g7303.t12.CDS2 | 22848249 | 22848310 |
| chr_2 | g7303 | g7303.t12 | exon | g7303.t12.exon3 | 22848386 | 22848511 |
| chr_2 | g7303 | g7303.t12 | cds | g7303.t12.CDS3 | 22848386 | 22848511 |
| chr_2 | g7303 | g7303.t12 | exon | g7303.t12.exon4 | 22848617 | 22848675 |
| chr_2 | g7303 | g7303.t12 | cds | g7303.t12.CDS4 | 22848617 | 22848675 |
| chr_2 | g7303 | g7303.t12 | exon | g7303.t12.exon5 | 22848744 | 22848824 |
| chr_2 | g7303 | g7303.t12 | cds | g7303.t12.CDS5 | 22848744 | 22848824 |
| chr_2 | g7303 | g7303.t12 | exon | g7303.t12.exon6 | 22848955 | 22849009 |
| chr_2 | g7303 | g7303.t12 | cds | g7303.t12.CDS6 | 22848955 | 22849009 |
| chr_2 | g7303 | g7303.t12 | exon | g7303.t12.exon7 | 22849096 | 22849284 |
| chr_2 | g7303 | g7303.t12 | exon | g7303.t12.exon8 | 22849729 | 22849864 |
| chr_2 | g7303 | g7303.t12 | TSS | g7303.t12 | 22850791 | 22850791 |
Sequences
>g7303.t12 Gene=g7303 Length=1399
AGTTCAAGTTGAACGTTGAACTGAAATTCTCCGCTTTCGTTCTCAAAAAATAATTTTTAA
GTGAGGATTAGATAAATTATTTCGATATTTAAGGCATCAGGACATTTAGAAAACTGAAGT
TAAGCATCAAGCGTAGATAAAGCTATATCGTCGCTAAACACAAGAAAAACTATAATTTAG
AAAGGAAACTGCGAGTGCAAGAGGAGAAAAAAAGAAGATTGTGTGTGACCTGTGAAATTA
TATACATTCGAAAAGAAGACTTAATAAATAAAGATGGGAAACGTATTTGCTAATCTGTTC
AAAGGTTTATTTGGTAAAAAGGAGAATGGTTGGTCTCGATGCTGCTGGTAAAACGACAAT
TTTATACAAGCTTAAATTAGGTGAAATTGTAACTACAATCCCAACCATTGGCTTCAACGT
TGAAACTGTAGAATACAAAAATATTTCATTTACTGTTTGGGATGTTGGTGGTCAAGACAA
AATCCGCCCACTCTGGAGACATTATTTCCAAAATACCCAAGGGCTTATCTTTGTCGTTGA
TAGTAATGACCGTGAGCGTGTTGGTGAAGCTCGTGAAGAATTAATGAGAATGTTGGCTGA
AGATGAATTGAGGGATGCTGTGCTTTTAATTTTTGCCAACAAGCAGGATTTGCCCAATGC
TATGAATGCAGCCGAAATCACAGATAAATTAGGTCTTCACTCATTACGAAACCGAAGCTG
GTATATTCAAGCAACGTGTGCAACCAGTGGAGATGGCCTCTATGAAGGTTTGGATTGGCT
TTCGAATCAACTGAAGAACGCTAACCGCTAAGAATCCGAATATAAATGAAGAAATAATAT
GAAAGTATTGATCTACCAACCATCAAAAAAACTTACATTTAATTATTTTCAAGCAAAAAA
ATGAGAGAAAAAGATAAAGAGAAATTGATTAAATAAATTCACAATATTCGGGATATTGAA
ACAAAAAAAAATAAAACAAGCAGAAAATTTAATGATATAAAAAACACACAGATTAAGGCA
TAAAAATCATTGCAAGAGGAAACAAAAAACACACTTTTAAATGAGAAAAAAATAATGAAA
AAACATTGCTGTCGTTAAGAAATATAAATAAAAAAGGCACTTCGGTGTTCGATGATAAAA
TAAAATTTAAGTAAAAGAATAATATCCATACTATTATTTAAACGCAAGATGACGAAAGAT
GAATTAATTATAAAAATATATAAATTTACTTTTTTGAGCAAGCTGTATGATGAGGAAGAC
AATTTCATAGATCATTTTATCTTTTTTTCAAAATGAGTTTCTAACAAAATCATACACACT
CAGCAAACACATACATTTACTATATTAAAAAAATTTATTTGCAAAAAAATAAGGAAATTG
GAGGTTGAAAAGATGAAAA
>g7303.t12 Gene=g7303 Length=161
MVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHY
FQNTQGLIFVVDSNDRERVGEAREELMRMLAEDELRDAVLLIFANKQDLPNAMNAAEITD
KLGLHSLRNRSWYIQATCATSGDGLYEGLDWLSNQLKNANR
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 9 | g7303.t12 | CDD | cd04150 | Arf1_5_like | 1 | 155 | 0.000 |
| 8 | g7303.t12 | Gene3D | G3DSA:3.40.50.300 | - | 1 | 156 | 0.000 |
| 2 | g7303.t12 | PANTHER | PTHR11711 | ADP RIBOSYLATION FACTOR-RELATED | 1 | 158 | 0.000 |
| 3 | g7303.t12 | PANTHER | PTHR11711:SF388 | ADP-RIBOSYLATION FACTOR 2-LIKE | 1 | 158 | 0.000 |
| 5 | g7303.t12 | PRINTS | PR00328 | GTP-binding SAR1 protein signature | 26 | 50 | 0.000 |
| 6 | g7303.t12 | PRINTS | PR00328 | GTP-binding SAR1 protein signature | 53 | 78 | 0.000 |
| 4 | g7303.t12 | PRINTS | PR00328 | GTP-binding SAR1 protein signature | 98 | 119 | 0.000 |
| 1 | g7303.t12 | Pfam | PF00025 | ADP-ribosylation factor family | 1 | 155 | 0.000 |
| 13 | g7303.t12 | ProSiteProfiles | PS51417 | small GTPase Arf family profile. | 1 | 156 | 23.733 |
| 10 | g7303.t12 | SMART | SM00177 | arf_sub_2 | 1 | 160 | 0.000 |
| 11 | g7303.t12 | SMART | SM00178 | sar_sub_1 | 1 | 156 | 0.000 |
| 7 | g7303.t12 | SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 1 | 159 | 0.000 |
| 12 | g7303.t12 | TIGRFAM | TIGR00231 | small_GTP: small GTP-binding protein domain | 1 | 138 | 0.000 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0005525 | GTP binding | MF |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
