Gene loci information

Transcript annotation

  • This transcript has been annotated as ADP-ribosylation factor 1.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_2 g7303 g7303.t26 isoform g7303.t26 22847920 22849864
chr_2 g7303 g7303.t26 exon g7303.t26.exon1 22847920 22847971
chr_2 g7303 g7303.t26 TTS g7303.t26 22847929 22847929
chr_2 g7303 g7303.t26 exon g7303.t26.exon2 22848047 22848182
chr_2 g7303 g7303.t26 cds g7303.t26.CDS1 22848080 22848182
chr_2 g7303 g7303.t26 exon g7303.t26.exon3 22848249 22848310
chr_2 g7303 g7303.t26 cds g7303.t26.CDS2 22848249 22848310
chr_2 g7303 g7303.t26 exon g7303.t26.exon4 22848386 22848511
chr_2 g7303 g7303.t26 cds g7303.t26.CDS3 22848386 22848511
chr_2 g7303 g7303.t26 exon g7303.t26.exon5 22848625 22848675
chr_2 g7303 g7303.t26 cds g7303.t26.CDS4 22848625 22848675
chr_2 g7303 g7303.t26 exon g7303.t26.exon6 22848744 22848824
chr_2 g7303 g7303.t26 exon g7303.t26.exon7 22848955 22849009
chr_2 g7303 g7303.t26 exon g7303.t26.exon8 22849085 22849284
chr_2 g7303 g7303.t26 exon g7303.t26.exon9 22849729 22849864
chr_2 g7303 g7303.t26 TSS g7303.t26 22849846 22849846

Sequences

>g7303.t26 Gene=g7303 Length=899
AGTTCAAGTTGAACGTTGAACTGAAATTCTCCGCTTTCGTTCTCAAAAAATAATTTTTAA
GTGAGGATTAGATAAATTATTTCGATATTTAAGGCATCAGGACATTTAGAAAACTGAAGT
TAAGCATCAAGCGTAGATAAAGCTATATCGTCGCTAAACACAAGAAAAACTATAATTTAG
AAAGGAAACTGCGAGTGCAAGAGGAGAAAAAAAGAAGATTGTGTGTGACCTGTGAAATTA
TATACATTCGAAAAGAAGACTTAATAAATAAAGATGGGAAACGTATTTGCTAATCTGTTC
AAAGGTTTATTTGGTAAAAAGGAGATGAGAATATTGATGGTTGGTCTCGATGCTGCTGGT
AAAACGACAATTTTATACAAGCTTAAATTAGGTGAAATTGTAACTACAATCCCAACCATT
GGCTTCAACGTTGAAACTGTAGAATACAAAAATATTTCATTTACTGTTTGGGATGTTGGT
GGTCAAGACAAAATCCGCCCACTCTGGAGACATTATTTCCAAAGGGCTTATCTTTGTCGT
TGATAGTAATGACCGTGAGCGTGTTGGTGAAGCTCGTGAAGAATTAATGAGAATGTTGGC
TGAAGATGAATTGAGGGATGCTGTGCTTTTAATTTTTGCCAACAAGCAGGATTTGCCCAA
TGCTATGAATGCAGCCGAAATCACAGATAAATTAGGTCTTCACTCATTACGAAACCGAAG
CTGGTATATTCAAGCAACGTGTGCAACCAGTGGAGATGGCCTCTATGAAGGTTTGGATTG
GCTTTCGAATCAACTGAAGAACGCTAACCGCTAAGAATCCGAATATAAATGAAGAAATAA
TATGAAAAGAAATTGATTAAATAAATTCACAATATTCGGGATATTGAAACAAAAAAAAA

>g7303.t26 Gene=g7303 Length=113
MLVVKTKSAHSGDIISKGLIFVVDSNDRERVGEAREELMRMLAEDELRDAVLLIFANKQD
LPNAMNAAEITDKLGLHSLRNRSWYIQATCATSGDGLYEGLDWLSNQLKNANR

Protein features from InterProScan

Transcript Database ID Name Start End E.value
6 g7303.t26 Gene3D G3DSA:3.40.50.300 - 14 112 0.000
2 g7303.t26 PANTHER PTHR11711 ADP RIBOSYLATION FACTOR-RELATED 16 111 0.000
3 g7303.t26 PANTHER PTHR11711:SF392 ADP-RIBOSYLATION FACTOR 1 16 111 0.000
1 g7303.t26 Pfam PF00025 ADP-ribosylation factor family 17 107 0.000
7 g7303.t26 ProSiteProfiles PS51417 small GTPase Arf family profile. 1 108 10.985
5 g7303.t26 SMART SM00177 arf_sub_2 1 112 0.000
4 g7303.t26 SUPERFAMILY SSF52540 P-loop containing nucleoside triphosphate hydrolases 17 111 0.000

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0005525 GTP binding MF

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed