Gene loci information

Transcript annotation

  • This transcript has been annotated as 2-acylglycerol O-acyltransferase 2-A.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_3 g895 g895.t9 TTS g895.t9 6753915 6753915
chr_3 g895 g895.t9 isoform g895.t9 6753944 6755526
chr_3 g895 g895.t9 exon g895.t9.exon1 6753944 6754251
chr_3 g895 g895.t9 cds g895.t9.CDS1 6753944 6754251
chr_3 g895 g895.t9 exon g895.t9.exon2 6754308 6754452
chr_3 g895 g895.t9 cds g895.t9.CDS2 6754308 6754452
chr_3 g895 g895.t9 exon g895.t9.exon3 6754509 6754743
chr_3 g895 g895.t9 cds g895.t9.CDS3 6754509 6754743
chr_3 g895 g895.t9 exon g895.t9.exon4 6754798 6754924
chr_3 g895 g895.t9 cds g895.t9.CDS4 6754798 6754924
chr_3 g895 g895.t9 exon g895.t9.exon5 6755125 6755209
chr_3 g895 g895.t9 cds g895.t9.CDS5 6755125 6755209
chr_3 g895 g895.t9 exon g895.t9.exon6 6755383 6755526
chr_3 g895 g895.t9 cds g895.t9.CDS6 6755383 6755526
chr_3 g895 g895.t9 TSS g895.t9 6755612 6755612

Sequences

>g895.t9 Gene=g895 Length=1044
ATGAAGAACTTAAAATCGATTTTGTCATCATCGGCATTAACGCCAACGGTGAATCGCTAT
TTGGAAGTACTCAGTGCATTGCTCTTTGGCTACATTGTGTTTTTTATTGAAGTGTCATGT
GCTTACATTGTGTATCGAATGATTGTTTATGGTGGGACAATTACTCATCTTTTTCTCGCC
GGTTATTTCATTTTCATGTTTGTTGATAGAAATGCTGATAATGACTGCAACTGGATTCGT
AATTTAAAATGTTTCAAATATTTTGCCAATTATTTTCCTGTGAAACTTATCAAAACTGCT
CATTTGCCGCCAAATAAAAATTATTTATTCGCCTGCTATCCACATGGAGTTATTGGCTGT
GGCTATTTTGCAAATTTCGTGACTCATGGAACAAACTTTCATCAACTATTTCCTGGAATT
CGGTCACGTGTTGTGTCACTTACTTATCACTTTTACATTCCATTTTATCGTGAATTAGTT
TTAGCATGGGGTGTAATGTCACCCAAATTTATTAGCATTAAGAATGCTTTGTCACAATCA
ACAGATGAAAATGCACCACTTAATTTAAAAGATGGTTATCGATCCACTGCCATTGTAATA
TCAATCGGAGGAGCTCAGGAATCATTAAATTCCAAACCTGGACAATACAAAATCGTTATT
AAGAAACGGAAAGGCTTCATCAAAGCTGTTTTACAGACCGGTGCATCACTTGTGCCGGTA
TTCTCTTTTGGTGAAGTTGATGTCTATGACCAAGTTGAAGGACCATTTTTAAGAAAATTC
CAAGAATTTATGAAACGTTTAACGAGCGTTTCACCTGTGATTTTTATCGGTCGTAGTTTT
CTTCCAATTGGAGGAATCCCACGCCGAGCACCAATCAACACTGTCGTTGGAGCACCGATA
GAAGTAACAAAAAATCCTACACCATCACAGAGCGATATTGACAATTTACATGCACGCTAT
ATGGAAGATTTATTTAAGCTCTTCGAGGAACACAAATCGAAATATTTGAATGATTCTCGA
AATGTACATTTGATTATGGAATAA

>g895.t9 Gene=g895 Length=347
MKNLKSILSSSALTPTVNRYLEVLSALLFGYIVFFIEVSCAYIVYRMIVYGGTITHLFLA
GYFIFMFVDRNADNDCNWIRNLKCFKYFANYFPVKLIKTAHLPPNKNYLFACYPHGVIGC
GYFANFVTHGTNFHQLFPGIRSRVVSLTYHFYIPFYRELVLAWGVMSPKFISIKNALSQS
TDENAPLNLKDGYRSTAIVISIGGAQESLNSKPGQYKIVIKKRKGFIKAVLQTGASLVPV
FSFGEVDVYDQVEGPFLRKFQEFMKRLTSVSPVIFIGRSFLPIGGIPRRAPINTVVGAPI
EVTKNPTPSQSDIDNLHARYMEDLFKLFEEHKSKYLNDSRNVHLIME

Protein features from InterProScan

Transcript Database ID Name Start End E.value
12 g895.t9 CDD cd07987 LPLAT_MGAT-like 88 333 1.81365E-48
2 g895.t9 PANTHER PTHR12317 DIACYLGLYCEROL O-ACYLTRANSFERASE 16 341 3.3E-94
3 g895.t9 PANTHER PTHR12317:SF0 DIACYLGLYCEROL O-ACYLTRANSFERASE 1 16 341 3.3E-94
1 g895.t9 Pfam PF03982 Diacylglycerol acyltransferase 54 336 1.8E-86
8 g895.t9 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. 1 19 -
10 g895.t9 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 20 40 -
7 g895.t9 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. 41 46 -
11 g895.t9 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 47 68 -
9 g895.t9 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. 69 347 -
4 g895.t9 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 23 45 -
5 g895.t9 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 49 68 -
6 g895.t9 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 108 130 -

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0016747 acyltransferase activity, transferring groups other than amino-acyl groups MF

KEGG

Orthology

Pathway

  • This transcript belongs to the following pathways

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed