Gene loci information

Isoforms of this gene

  • There are 13 isoforms that are expressed from this gene.
  • The longest transcript is g895.t1
  • List of isoforms

g895.t1, g895.t2, g895.t3, g895.t5, g895.t6, g895.t7, g895.t8, g895.t9, g895.t10, g895.t11, g895.t12, g895.t13, g895.t14

The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively.

KEGG

Orthology

Pathway

  • This gene belongs to the following 1 pathways
ko00561
ko01100
ko04975

Gene conservation patterns

Diptera wide analysis

The Orthogroup for the longest transcript (g895.t1) is OG0001171. Other genes in this orthogroup contains the following. This list is ordered by phylogeny determined by OrthoFinder analysis. Genes from ENSEMBL are linked to their corresponding pages. For P. nubifer and P. vanderplanki, they are linked to the Midgebase1 and Midgebase2 pages.

Conservation

Organism Abb. ID No. Orthologs Ortholog ID
Atta cephalotes ACEPH 1 XP_012062634.1
Apis mellifera AMELL 1 GB54888-PA
Culicoides sonorensis CSONO 0 none
Polypedilum nubifer PNUBI 2 Pn.13297, Pn.10658
Polypedilum vanderplanki PVAND 2 g8135.t1, g895.t1
Polypedilum pembai PPEMB 3 g2612.t1, g12736.t1, g990.t1
Belgica antarctica BANTA 3 IU25_01820-mRNA-1, IU25_06495-mRNA-1, IU25_07388-mRNA-1
Clunio marinus CMARI 1 CRL03396.1
Aedes aegypti lvpagwg AAEGYL 1 AAEL008878-PA
Culex quinquefasciatus quinquefasciatus CQUINQ 2 EDS33601.1, EDS44927.1
Culex quinquefasciatus CQUIN 2 CPIJ020206-PA, CPIJ017146-PA
Anopheles atroparvus AATRO 1 AATE001666-PA
Anopheles sinensis china ASINEC 1 ASIC015076-PA
Anopheles dirus ADIRU 1 ADIR007506-PA
Anopheles farauti AFARA 1 AFAF000845-PA
Anopheles epiroticus AEPIR 1 AEPI006273-PA
Anopheles christyi ACHRI 1 ACHR003385-PA
Anopheles merus AMERU 1 AMEM017818-PA
Anopheles melas AMELA 1 AMEC011570-PA
Anopheles arabiensis AARAB 1 AARA007571-PA
Anopheles coluzzii ACOLU 1 ACOM024913-PA
Anopheles coluzzii ngousso ACOLUN 1 ACON005949-PA
Anopheles gambiae AGAMB 1 AGAP005949-PA
Anopheles quadriannulatus AQUAD 1 AQUA005596-PA
Anopheles minimus AMINI 1 AMIN010981-PA
Anopheles culicifacies ACULI 1 ACUA025605-PA
Anopheles funestus AFUNE 1 AFUN011779-PA
Anopheles stephensi indian ASTEPI 1 ASTEI06356-PA
Anopheles stephensi ASTEP 1 ASTE004878-PA
Anopheles albimanus AALBI 1 AALB005798-PA
Anopheles darlingi ADARL 1 ADAC007532-PA
Drosophila willistoni DWILL 1 FBpp0250858
Drosophila pseudoobscura DPSEU 3 FBpp0277004, FBpp0276682, FBpp0276683
Drosophila persimilis DPERS 3 FBpp0174943, FBpp0174634, FBpp0174633
Drosophila ananassae DANAN 3 FBpp0116390, FBpp0116391, FBpp0116389
Drosophila melanogaster DMELA 3 FBpp0088002, FBpp0088001, FBpp0088003
Drosophila sechellia DSECH 3 FBpp0202454, FBpp0202455, FBpp0202453
Drosophila simulans DSIMU 3 FBpp0208907, FBpp0208906, FBpp0213757
Drosophila erecta DEREC 3 FBpp0141844, FBpp0141846, FBpp0141845
Drosophila yakuba DYAKU 3 FBpp0264155, FBpp0354014, FBpp0264156
Drosophila virilis DVIRI 1 FBpp0235655
Drosophila mojavensis DMOJA 1 FBpp0169205
Drosophila grimshawi DGRIM 1 FBpp0154222
Lucilia cuprina LCUPR 1 KNC26567
Musca domestica MDOME 3 MDOA014735-PA, MDOA014481-PA, MDOA008683-PA
Stomoxys calcitrans SCALC 2 SCAU015172-PA, SCAU001792-PA
Glossina brevipalpis GBREV 1 GBRI022518-PA
Glossina palpalis GPALP 1 GPPI019976-PA
Glossina austeni GAUST 1 GAUT023212-PA
Glossina pallidipes GPALL 1 GPAI044096-PA
Glossina morsitans GMORS 1 GMOY010954-PA

Gene tree

Chironomidae-wide analysis

The Orthogroup for the longest transcript (g895.t1) is OG0000784. Other genes in this orthogroup contains the following. [This data uses ab initio gene models predicted in Yoshida et al 2022, so most genes are not registered in public databases. Please contact the authors for more information on these data.]

Conservation

Organism Abb. ID Ortholog ID
Podonomus sp PODON TRINITY_DN75531_c0_g1_i1.p1
Parochlus steinenii PSTEI PSG07838
Trissopelopia nemorum TNEMO TRINITY_DN1465_c0_g1_i2.p1, TRINITY_DN8342_c0_g1_i1.p1
Paraheptagyia tonnoiri PTONN TRINITY_DN799_c0_g1_i4.p1
Telmatogeton pecinata TPECI TRINITY_DN8645_c0_g1_i12.p1
Cricotopus draysoni CDRAY TRINITY_DN11468_c0_g1_i1.p1, TRINITY_DN4060_c0_g1_i1.p1, TRINITY_DN20978_c0_g1_i1.p1, TRINITY_DN47703_c0_g1_i1.p1, TRINITY_DN59755_c0_g1_i1.p1, TRINITY_DN103433_c0_g1_i1.p1, TRINITY_DN77356_c0_g1_i1.p1, TRINITY_DN71736_c0_g1_i1.p2, TRINITY_DN109156_c0_g1_i1.p1, TRINITY_DN347_c0_g1_i1.p1
Clunio marinus CMARI CRL03396.1
Cardiocladius sp CARDI TRINITY_DN3411_c0_g1_i5.p1, TRINITY_DN55829_c0_g1_i1.p1
Belgica antarctica BANTA IU25_01820-mRNA-1, IU25_07388-mRNA-1
Kiefferophyes invenustulus KINVE TRINITY_DN9278_c1_g1_i1.p2, TRINITY_DN3124_c0_g1_i9.p1, TRINITY_DN826_c0_g2_i2.p1, TRINITY_DN9278_c0_g3_i1.p1, TRINITY_DN207242_c0_g1_i1.p1, TRINITY_DN36248_c0_g1_i1.p1, TRINITY_DN9278_c0_g2_i1.p1, TRINITY_DN826_c0_g1_i15.p1, TRINITY_DN9278_c0_g1_i4.p1, TRINITY_DN185031_c0_g1_i1.p1, TRINITY_DN36248_c1_g1_i1.p2, TRINITY_DN16092_c0_g1_i3.p1, TRINITY_DN99187_c0_g2_i3.p1, TRINITY_DN218_c514_g1_i1.p1, TRINITY_DN90112_c0_g1_i1.p1, TRINITY_DN9278_c0_g4_i1.p3, TRINITY_DN21550_c0_g1_i3.p1, TRINITY_DN263607_c0_g1_i1.p1, TRINITY_DN826_c2_g1_i1.p1
Chironomus riparius CRIPA g8430.t1, g6887.t1, g6698.t1, g17890.t1
Chironomus columbiensis CCOLU TRINITY_DN2727_c0_g1_i13.p1, TRINITY_DN9817_c0_g1_i1.p1, TRINITY_DN24127_c0_g1_i1.p1
Chironomus tentans CTENT g13477.t1, g12751.t1, g10747.t1
Chironomus dilutus CDILU TRINITY_DN3029_c0_g3_i1.p1, TRINITY_DN5399_c0_g1_i4.p1
Polypedilum nubifer PNUBI Pn.13297, Pn.10658
Polypedilum vanderplanki PVAND g8135.t1, g895.t1
Polypedilum pembai PPEMB g2612.t1, g12736.t1, g990.t1
Culicoides sonorensis CSONO none
Aedes aegypti lvpagwg AAEGYL AAEL008878-PA
Anopheles gambiae AGAMB AGAP005949-PA

Gene tree

Expression profile for this gene

Gene-level expression profile

Raw TPM values

Expression profile of isoforms

A heatmap representing isoforms with TPM > 0 in at least one sample. Expression profiles were are clustered based on the spearman correlation