General information for g9181.t1
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Myrosinase 1.
Parent gene
- The parent gene g9181 is located on chr_1: 647157..648738 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_1 | g9181 | g9181.t1 | isoform | g9181.t1 | 647157 | 648738 |
| chr_1 | g9181 | g9181.t1 | exon | g9181.t1.exon1 | 647157 | 647810 |
| chr_1 | g9181 | g9181.t1 | cds | g9181.t1.CDS1 | 647157 | 647810 |
| chr_1 | g9181 | g9181.t1 | exon | g9181.t1.exon2 | 647865 | 648392 |
| chr_1 | g9181 | g9181.t1 | cds | g9181.t1.CDS2 | 647865 | 648392 |
| chr_1 | g9181 | g9181.t1 | exon | g9181.t1.exon3 | 648454 | 648738 |
| chr_1 | g9181 | g9181.t1 | cds | g9181.t1.CDS3 | 648454 | 648738 |
| chr_1 | g9181 | g9181.t1 | TSS | g9181.t1 | 648816 | 648816 |
| chr_1 | g9181 | g9181.t1 | TTS | g9181.t1 | NA | NA |
Sequences
>g9181.t1 Gene=g9181 Length=1467
ATGCACGGAATTTTCACGACAATTTTAATGTCAGCATTTGTAAAATTCACGTACACGTGT
GAAAATTCAACAGTTATTGAAATTCCTGAAAATTTCAAAATTGGAGCATCAACATCTTCA
TATCAAATTGAAGGTGGTTGGAATTTAGATGGAAAAACTGAAAATGTTTGGGACACTTTT
ACTCACAATCATCCTGAAAAAATTGAAGATCATTCAAATGGTGATGTTGCTGCAGATTCG
TATCATTTTTATAAGAAAGATGTTGAAGCATTAAAATATGTTGGGTTTAATCAGTACAGA
TTTTCAATTTCTTGGTCGAGAGTTATTGCCAATGGAACAATTATCAACAAAAAAGGCATT
GAATATTACAATAATTTGATTAATGAACTTATTTTAAATAGAATTGAACCTGTTGTTACA
ATGTTTCATTGGGATTTACCTCAATATCTTCAAAATTTAGGCGGTTTTGTAAATCCATTA
ATTACTAAATATTTTGAATTTTATGCAAATGTTTTATTTGAAAATTTTGGAGATCGTGTG
AAAATTTGGATAACATTCAATGAACCAACTCTTTATTGCATAGGGGAATATGGTGAAGGA
AGATCTGGTTCATATATAAAAGCACCAGGAGTCGGTGAATATTTGTGTGGTCATCATCTT
TTAATTTCTCATGCAAATGTTTATCATTTATATAAAAATAAATTTTATGACAAACAAAAG
GGAGAAATTGGAATCAGTTTAAAACTTCAATATCTTTATCCAAAAGATGAAACAATCACA
AAGGAATTCGTTGAAAGAAGTCTTGATTTGACTAATGGTTGGTTTATAAACCCAATTTTT
AGTAAAAATGGTGGCTATCCTGAGGAATTAGTAAAAATTTTTGTAAAAAAAAGTATTGAA
GAAGGAACTTGGTCTCGTTTACCAATTATGAGTGATGAATTGAAAAAGAGAATTCAAGGA
ACAGCTGATTTTATGGGTGTCAATTATTATTCATCAGAACTTGTAGAACCAAAAACTCAA
CTTGATGATTCACCACAATTTGACATCGACATTGGCTTAACTTTTTCAGTAGATGAAAGA
TGGCCTAAATCAGATAGTCTTTGGCTTTATATAGTTCCAGAAGGATTGTATGATTTACTT
ATTTGGATAAGAGATAGATATAAAAACCCAAAAATTATGATAACAGAAAATGGTTATGCA
GATAATGGTGAAATAAATGATTTTGAAAGAATAAAATATATAAAACAACATATTGCTGTA
ATTTTAAAAGCAAAATCAGAAAATTGTAATATTGTTTCTTATATGGTTTGGAGTTTATTG
GATAATTTTGAATGGAATATTGGATATAGTGCTGCATTAGGAATTTTTTCTGTTAATATG
AGTAGTCCATTGAAAGAAAGAACACCAAAACGATCTGCAAAATTTTTTAAAAATTTAATT
ACTAATGGAAAATTCGAAATGTGCTAG
>g9181.t1 Gene=g9181 Length=488
MHGIFTTILMSAFVKFTYTCENSTVIEIPENFKIGASTSSYQIEGGWNLDGKTENVWDTF
THNHPEKIEDHSNGDVAADSYHFYKKDVEALKYVGFNQYRFSISWSRVIANGTIINKKGI
EYYNNLINELILNRIEPVVTMFHWDLPQYLQNLGGFVNPLITKYFEFYANVLFENFGDRV
KIWITFNEPTLYCIGEYGEGRSGSYIKAPGVGEYLCGHHLLISHANVYHLYKNKFYDKQK
GEIGISLKLQYLYPKDETITKEFVERSLDLTNGWFINPIFSKNGGYPEELVKIFVKKSIE
EGTWSRLPIMSDELKKRIQGTADFMGVNYYSSELVEPKTQLDDSPQFDIDIGLTFSVDER
WPKSDSLWLYIVPEGLYDLLIWIRDRYKNPKIMITENGYADNGEINDFERIKYIKQHIAV
ILKAKSENCNIVSYMVWSLLDNFEWNIGYSAALGIFSVNMSSPLKERTPKRSAKFFKNLI
TNGKFEMC
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 10 | g9181.t1 | Gene3D | G3DSA:3.20.20.80 | Glycosidases | 26 | 487 | 2.2E-172 |
| 2 | g9181.t1 | PANTHER | PTHR10353:SF36 | CYTOSOLIC BETA-GLUCOSIDASE | 26 | 485 | 4.2E-151 |
| 3 | g9181.t1 | PANTHER | PTHR10353 | GLYCOSYL HYDROLASE | 26 | 485 | 4.2E-151 |
| 5 | g9181.t1 | PRINTS | PR00131 | Glycosyl hydrolase family 1 signature | 321 | 335 | 5.4E-15 |
| 4 | g9181.t1 | PRINTS | PR00131 | Glycosyl hydrolase family 1 signature | 392 | 400 | 5.4E-15 |
| 7 | g9181.t1 | PRINTS | PR00131 | Glycosyl hydrolase family 1 signature | 407 | 418 | 5.4E-15 |
| 6 | g9181.t1 | PRINTS | PR00131 | Glycosyl hydrolase family 1 signature | 428 | 445 | 5.4E-15 |
| 1 | g9181.t1 | Pfam | PF00232 | Glycosyl hydrolase family 1 | 28 | 483 | 8.8E-140 |
| 8 | g9181.t1 | SUPERFAMILY | SSF51445 | (Trans)glycosidases | 28 | 485 | 3.57E-142 |
| 9 | g9181.t1 | SignalP_EUK | SignalP-noTM | SignalP-noTM | 1 | 19 | - |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds | MF |
| GO:0005975 | carbohydrate metabolic process | BP |
KEGG
Orthology
- This transcript has been annotated with K01188 (beta-glucosidase)
Pathway
- This transcript belongs to the following pathways
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed