Gene loci information

Isoforms of this gene

  • There are 18 isoforms that are expressed from this gene.
  • The longest transcript is g9301.t7
  • List of isoforms

g9301.t1, g9301.t2, g9301.t4, g9301.t5, g9301.t6, g9301.t7, g9301.t8, g9301.t9, g9301.t10, g9301.t11, g9301.t12, g9301.t13, g9301.t14, g9301.t15, g9301.t16, g9301.t17, g9301.t18, g9301.t19

The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively.

KEGG

Orthology

Pathway

  • This gene belongs to the following 2 pathways
## Warning in keggs == k_to_ko$V1: longer object length is not a multiple of
## shorter object length
ko00020
ko00270
ko00620
ko00630
ko00680
ko00710
ko00720
ko01100
ko01110
ko01120
ko01200
ko00020
ko00270
ko00620
ko00630
ko00710
ko01100
ko01110
ko01120
ko01200

This gene has too many mapped pathways (>3). Please look at the original KEGG entry above for pathway visualization.

Gene conservation patterns

Diptera wide analysis

The Orthogroup for the longest transcript (g9301.t7) is OG0000785. Other genes in this orthogroup contains the following. This list is ordered by phylogeny determined by OrthoFinder analysis. Genes from ENSEMBL are linked to their corresponding pages. For P. nubifer and P. vanderplanki, they are linked to the Midgebase1 and Midgebase2 pages.

Conservation

Organism Abb. ID No. Orthologs Ortholog ID
Atta cephalotes ACEPH 2 XP_012061828.1, XP_012060025.1
Apis mellifera AMELL 2 GB55316-PA, GB42526-PA
Culicoides sonorensis CSONO 2 CSON013256-1, CSON011329-1
Polypedilum nubifer PNUBI 1 Pn.14833
Polypedilum vanderplanki PVAND 1 g9301.t7
Polypedilum pembai PPEMB 1 g12702.t1
Belgica antarctica BANTA 1 IU25_07222-mRNA-1
Clunio marinus CMARI 1 CRK99511.1
Aedes aegypti lvpagwg AAEGYL 1 AAEL008166-PA
Culex quinquefasciatus quinquefasciatus CQUINQ 1 EDS30985.1
Culex quinquefasciatus CQUIN 1 CPIJ008366-PA
Anopheles atroparvus AATRO 1 AATE020788-PA
Anopheles sinensis china ASINEC 1 ASIC008150-PA
Anopheles dirus ADIRU 1 ADIR015502-PA
Anopheles farauti AFARA 1 AFAF017434-PA
Anopheles epiroticus AEPIR 0 none
Anopheles christyi ACHRI 0 none
Anopheles merus AMERU 1 AMEM005528-PA
Anopheles melas AMELA 2 AMEC014506-PA, AMEC012768-PA
Anopheles arabiensis AARAB 1 AARA015828-PA
Anopheles coluzzii ACOLU 1 ACOM023682-PA
Anopheles coluzzii ngousso ACOLUN 1 ACON001903-PA
Anopheles gambiae AGAMB 1 AGAP001903-PA
Anopheles quadriannulatus AQUAD 1 AQUA016986-PA
Anopheles minimus AMINI 0 none
Anopheles culicifacies ACULI 1 ACUA016999-PA
Anopheles funestus AFUNE 1 AFUN020916-PA
Anopheles stephensi indian ASTEPI 0 none
Anopheles stephensi ASTEP 0 none
Anopheles albimanus AALBI 0 none
Anopheles darlingi ADARL 1 ADAC010029-PA
Drosophila willistoni DWILL 5 FBpp0251277, FBpp0251529, FBpp0249060, FBpp0251304, FBpp0251278
Drosophila pseudoobscura DPSEU 6 FBpp0274493, FBpp0281044, FBpp0272590, FBpp0276633, FBpp0275081, FBpp0272591
Drosophila persimilis DPERS 5 FBpp0188980, FBpp0189371, FBpp0176112, FBpp0174583, FBpp0180521
Drosophila ananassae DANAN 3 FBpp0126263, FBpp0126941, FBpp0113865
Drosophila melanogaster DMELA 3 FBpp0082985, FBpp0075605, FBpp0075634
Drosophila sechellia DSECH 3 FBpp0206095, FBpp0206861, FBpp0196767
Drosophila simulans DSIMU 3 FBpp0211086, FBpp0315279, FBpp0212818
Drosophila erecta DEREC 3 FBpp0134158, FBpp0141305, FBpp0132337
Drosophila yakuba DYAKU 3 FBpp0270533, FBpp0266948, FBpp0265094
Drosophila virilis DVIRI 4 FBpp0234810, FBpp0398145, FBpp0236961, FBpp0234811
Drosophila mojavensis DMOJA 4 FBpp0167815, FBpp0173974, FBpp0167814, FBpp0385468
Drosophila grimshawi DGRIM 3 FBpp0155327, FBpp0155328, FBpp0152464
Lucilia cuprina LCUPR 1 KNC24655
Musca domestica MDOME 1 MDOA011122-PA
Stomoxys calcitrans SCALC 1 SCAU011239-PA
Glossina brevipalpis GBREV 5 GBRI041362-PA, GBRI040173-PA, GBRI041369-PA, GBRI041368-PA, GBRI041366-PA
Glossina palpalis GPALP 3 GPPI028245-PA, GPPI028242-PA, GPPI048193-PA
Glossina austeni GAUST 3 GAUT000052-PA, GAUT008999-PA, GAUT000056-PA
Glossina pallidipes GPALL 2 GPAI047113-PA, GPAI047103-PA
Glossina morsitans GMORS 2 GMOY011652-PA, GMOY011653-PA

Gene tree

Chironomidae-wide analysis

The Orthogroup for the longest transcript (g9301.t7) is OG0006926. Other genes in this orthogroup contains the following. [This data uses ab initio gene models predicted in Yoshida et al 2022, so most genes are not registered in public databases. Please contact the authors for more information on these data.]

Conservation

Organism Abb. ID Ortholog ID
Podonomus sp PODON TRINITY_DN19780_c0_g1_i4.p1
Parochlus steinenii PSTEI PSG00378
Trissopelopia nemorum TNEMO TRINITY_DN2658_c0_g1_i1.p1
Paraheptagyia tonnoiri PTONN TRINITY_DN14226_c2_g1_i2.p1
Telmatogeton pecinata TPECI TRINITY_DN2610_c0_g1_i1.p1
Cricotopus draysoni CDRAY TRINITY_DN554_c1_g1_i1.p1
Clunio marinus CMARI CRK99511.1
Cardiocladius sp CARDI TRINITY_DN19397_c0_g1_i3.p1
Belgica antarctica BANTA IU25_07222-mRNA-1
Kiefferophyes invenustulus KINVE TRINITY_DN2623_c0_g1_i2.p1, TRINITY_DN219_c1_g7_i2.p1, TRINITY_DN219_c1_g6_i1.p1
Chironomus riparius CRIPA g6611.t1
Chironomus columbiensis CCOLU TRINITY_DN2238_c0_g2_i1.p1
Chironomus tentans CTENT g3494.t1
Chironomus dilutus CDILU TRINITY_DN463_c0_g1_i3.p1
Polypedilum nubifer PNUBI Pn.14833
Polypedilum vanderplanki PVAND g9301.t7
Polypedilum pembai PPEMB g12702.t1
Culicoides sonorensis CSONO CSON013256-1, CSON011329-1
Aedes aegypti lvpagwg AAEGYL AAEL008166-PA
Anopheles gambiae AGAMB AGAP001903-PA

Gene tree

Expression profile for this gene

Gene-level expression profile

Raw TPM values

Expression profile of isoforms

A heatmap representing isoforms with TPM > 0 in at least one sample. Expression profiles were are clustered based on the spearman correlation