General information for g936.t38
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as 26S proteasome non-ATPase regulatory subunit 13.
Parent gene
- The parent gene g936 is located on chr_3: 6974999..6976564 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_3 | g936 | g936.t38 | isoform | g936.t38 | 6971565 | 6976037 |
| chr_3 | g936 | g936.t38 | exon | g936.t38.exon1 | 6971565 | 6972186 |
| chr_3 | g936 | g936.t38 | exon | g936.t38.exon2 | 6972278 | 6972398 |
| chr_3 | g936 | g936.t38 | exon | g936.t38.exon3 | 6974269 | 6974700 |
| chr_3 | g936 | g936.t38 | cds | g936.t38.CDS1 | 6974658 | 6974700 |
| chr_3 | g936 | g936.t38 | exon | g936.t38.exon4 | 6975291 | 6976037 |
| chr_3 | g936 | g936.t38 | cds | g936.t38.CDS2 | 6975291 | 6975985 |
| chr_3 | g936 | g936.t38 | TSS | g936.t38 | 6976445 | 6976445 |
| chr_3 | g936 | g936.t38 | TTS | g936.t38 | NA | NA |
Sequences
>g936.t38 Gene=g936 Length=1922
GCTCTATAATGAGTTAACAATCAAATTAGATTCTTTTGTTAAGAATCCAAATATGCAAAA
TGAGCAAGTTCTTATGCAATTGTATACAAATTTCATCCAGTCATTTGAGACAAAAATAAA
TCCTTTTGGGTTAGTTGAGATTCTTTCAGTTGTCATAAGCCACATGAGTGATAAAAAGGA
AGCTGTGAATTTCATTGACAAGGTAAAAGAGAAAGTAAAGATGTGTGATGAGGCAGTTTG
GCTCTGTAAAGTTCTTCAGGGACAGATTTACCTTGAATTTCTTGAAGATCTCGATTCAAC
AAAGAAAATTATTGAAGAATTAAAAGATACATTGGATGAAGCAGGCAACGTTACACCCGT
TCATGGCAAATACTATCTTCTTGCTTCACAATATTATCGTTTAATTGGGCATCACGCTGA
ATACTATCGTACTTCACTTCAATTTTTGGGATGTTCAATCGAAGAATTTCCAAAAGATCA
ATGGCCACAACAGGCTTTCTTCCTCGGACTTGCAGCTTTACTCGGAGAAGGCATTTATAA
TATCGGTGAATTACTTTCACATGAAATCATCGAATCACTCGTTGGAACTGAATATGAATG
GCTCATTGAACTGCTTAAAGCTTTCAATAGTGGCGATATTGGCAAATTTGATAAGATGAA
GCCTCAATGGTCAAAAATGGCTGATTTAGCAGCACAAGAAACTAAACTACGTCAAAAAAT
CTCACTCCTTTGCTTAATGGAAATGACAATAAAGACATATCTTACGTTTTATCAGTTCCT
CTTTTACTAATTTTTCTAATGTGAACAAATGATCATCATCAGCATGAGGAACTTCTTCTC
TCATAAATAAAGCCAATCTTAATAAATACTCAACATTATGACCGCTTGGTCCACTGGCAG
AACAAATTTGTTTCGCAATATTTTCTAAACTGTCTTCTCCCATCCAATATGAATTATCAG
GTGTAGCTATATAAATTATCGCTGGAAAAGCTTCTCCCGATATTCCAGAAAATTCAGACG
TTTTTCCGGGAAAAAACTTGATATATTTAACGTCATATCCTCCTAATTTACATTCCCTTT
GTTCGAGGTATTTTAATGCAAGCTCGCCTGTTACTTTGTATGCACATCCCCACACGATAC
CATTTTCATCTTCAACGAGTGTCACTACTCTACCGGGCTTTTCGTATGTTCCACGATGCG
TAGTATTCCCTTGCCAGAATCTTCTCTTATATCCACGAATATATCCAGTGATACATTCAG
TAAAGGAAAAACCCGGTCGCCACACAAGTGAACCATACCTAAAACATAGCATGTAGGTTC
GGTATTTGATGATTCTGAGCTATCACTGTCATAATCATCATCTCGGAATATATTGAATGC
GTCTTCCATAGCTGATATTTAATAAATATTATTGTAGCGTTTGTATACTTTTTTGTTAGG
CAGACAGGCAGTTGCTGAGATATATTTAATTTATTTTTTCAACTTTTCGGTTGTTACTTA
AATTTTTTTAATTATTATCACTTTTTTAATTCAGCTTTTATTTCTGAATAGAAGAAAAGT
CTATATAAACATATCTTCTTCTTTGTTTTTTTCCATTTACTTTAGATGGTTTAATAAAAT
TTTCCACTCTTCACTAAAATTTTTTGATGCCAACAGTTAAAATATTATATAAAATTTTCC
TTCTCTCTGTTTTACTGTTTTGCACAGATGTCACAAAAAAATACTGTCGTTGATATCAAT
TAATTGTGACCGTTTGCTGTCTGATCTGTTGAACGTCTGATGAATGAATAAAAATGCTCC
GTTTCGTCTCATTATTTTGTTTCTCTCTCTCTCTCTCTCGATCTCTTTTCTTTTACTCTC
GGCAGTTTAGTGTTTTCCTTTACTCTTTTCTTCACTTACTTGTGTACATATGTGCGGACA
TA
>g936.t38 Gene=g936 Length=245
MQNEQVLMQLYTNFIQSFETKINPFGLVEILSVVISHMSDKKEAVNFIDKVKEKVKMCDE
AVWLCKVLQGQIYLEFLEDLDSTKKIIEELKDTLDEAGNVTPVHGKYYLLASQYYRLIGH
HAEYYRTSLQFLGCSIEEFPKDQWPQQAFFLGLAALLGEGIYNIGELLSHEIIESLVGTE
YEWLIELLKAFNSGDIGKFDKMKPQWSKMADLAAQETKLRQKISLLCLMEMTIKTYLTFY
QFLFY
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 4 | g936.t38 | Coils | Coil | Coil | 80 | 100 | - |
| 3 | g936.t38 | Gene3D | G3DSA:1.25.40.570 | - | 119 | 243 | 5.6E-33 |
| 1 | g936.t38 | PANTHER | PTHR10539 | 26S PROTEASOME NON-ATPASE REGULATORY SUBUNIT 13 | 3 | 235 | 9.8E-69 |
| 2 | g936.t38 | PANTHER | PTHR10539:SF0 | 26S PROTEASOME NON-ATPASE REGULATORY SUBUNIT 13 | 3 | 235 | 9.8E-69 |
| 5 | g936.t38 | ProSiteProfiles | PS50250 | PCI domain profile. | 120 | 245 | 14.616 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
