Gene loci information

Isoforms of this gene

  • There are 3 isoforms that are expressed from this gene.
  • The longest transcript is g9462.t1
  • List of isoforms

g9462.t1, g9462.t2, g9462.t3

The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively.

KEGG

Orthology

Pathway

  • This gene belongs to the following 1 pathways
ko04624

Gene conservation patterns

Diptera wide analysis

The Orthogroup for the longest transcript (g9462.t1) is OG0000089. Other genes in this orthogroup contains the following. This list is ordered by phylogeny determined by OrthoFinder analysis. Genes from ENSEMBL are linked to their corresponding pages. For P. nubifer and P. vanderplanki, they are linked to the Midgebase1 and Midgebase2 pages.

Conservation

Organism Abb. ID No. Orthologs Ortholog ID
Atta cephalotes ACEPH 4 XP_012059667.1, XP_012057776.1, XP_012056262.1, XP_012059701.1
Apis mellifera AMELL 4 GB51741-PA, GB47804-PA, GB47805-PA, GB42500-PA
Culicoides sonorensis CSONO 3 CSON009787-1, CSON009649-1, CSON003218-1
Polypedilum nubifer PNUBI 5 Pn.06308, Pn.15789, Pn.06307, Pn.11316, Pn.05856
Polypedilum vanderplanki PVAND 9 g5768.t1, g5767.t1, g16550.t1, g7907.t1, g9462.t1, g10465.t1, g9460.t1, g9461.t2, g17763.t1
Polypedilum pembai PPEMB 6 g2779.t1, g8167.t1, g6464.t1, g10765.t1, g6738.t1, g8364.t1
Belgica antarctica BANTA 4 IU25_09854-mRNA-1, IU25_03056-mRNA-1, IU25_03055-mRNA-1, IU25_11440-mRNA-1
Clunio marinus CMARI 5 CRL05860.1, CRL05859.1, CRK97725.1, CRL04926.1, CRL00273.1
Aedes aegypti lvpagwg AAEGYL 4 AAEL014640-PD, AAEL009474-PA, AAEL017056-PB, AAEL007039-PB
Culex quinquefasciatus quinquefasciatus CQUINQ 6 EDS27549.1, EDS44291.1, EDS44292.1, EDS28912.1, EDS27550.1, EDS27551.1
Culex quinquefasciatus CQUIN 6 CPIJ016771-PA, CPIJ006560-PA, CPIJ007162-PA, CPIJ006561-PA, CPIJ006559-PA, CPIJ016770-PA
Anopheles atroparvus AATRO 5 AATE019391-PA, AATE007668-PA, AATE013512-PA, AATE012412-PA, AATE005500-PA
Anopheles sinensis china ASINEC 5 ASIC019100-PA, ASIC019089-PA, ASIC010240-PA, ASIC018684-PA, ASIC018683-PA
Anopheles dirus ADIRU 3 ADIR001575-PA, ADIR008094-PA, ADIR000960-PA
Anopheles farauti AFARA 4 AFAF001214-PA, AFAF019497-PA, AFAF010766-PC, AFAF000478-PA
Anopheles epiroticus AEPIR 3 AEPI003004-PA, AEPI003316-PA, AEPI003130-PA
Anopheles christyi ACHRI 3 ACHR009622-PA, ACHR004059-PA, ACHR007811-PA
Anopheles merus AMERU 4 AMEM014947-PA, AMEM009202-PB, AMEM006108-PA, AMEM005229-PA
Anopheles melas AMELA 6 AMEC019155-PA, AMEC001880-PA, AMEC015231-PA, AMEC006869-PA, AMEC016125-PA, AMEC008280-PA
Anopheles arabiensis AARAB 4 AARA010513-PA, AARA002982-PA, AARA007237-PA, AARA007236-PA
Anopheles coluzzii ACOLU 4 ACOM039889-PA, ACOM037782-PA, ACOM039886-PA, ACOM035295-PA
Anopheles coluzzii ngousso ACOLUN 4 ACON000536-PA, ACON006343-PA, ACON006342-PA, ACON005203-PB
Anopheles gambiae AGAMB 4 AGAP006343-PA, AGAP006342-PA, AGAP005203-PB, AGAP000536-PA
Anopheles quadriannulatus AQUAD 3 AQUA008191-PA, AQUA003411-PA, AQUA008370-PF
Anopheles minimus AMINI 4 AMIN008023-PA, AMIN008024-PA, AMIN007360-PA, AMIN005287-PA
Anopheles culicifacies ACULI 3 ACUA007971-PA, ACUA019750-PA, ACUA015150-PA
Anopheles funestus AFUNE 4 AFUN016625-PD, AFUN019139-PA, AFUN019141-PA, AFUN002863-PA
Anopheles stephensi indian ASTEPI 4 ASTEI10582-PA, ASTEI092504-PA, ASTEI09280-PA, ASTEI09281-PA
Anopheles stephensi ASTEP 2 ASTE007708-PA, ASTE000822-PA
Anopheles albimanus AALBI 3 AALB006755-PA, AALB004099-PA, AALB004098-PA
Anopheles darlingi ADARL 5 ADAC008274-PA, ADAC007851-PA, ADAC003246-PA, ADAC003233-PA, ADAC002673-PA
Drosophila willistoni DWILL 7 FBpp0379923, FBpp0254592, FBpp0253027, FBpp0250880, FBpp0250710, FBpp0246486, FBpp0378584
Drosophila pseudoobscura DPSEU 7 FBpp0340834, FBpp0331685, FBpp0278386, FBpp0278384, FBpp0286948, FBpp0274910, FBpp0272766
Drosophila persimilis DPERS 8 FBpp0177331, FBpp0181224, FBpp0182534, FBpp0181227, FBpp0182535, FBpp0182536, FBpp0190994, FBpp0190719
Drosophila ananassae DANAN 7 FBpp0347827, FBpp0124836, FBpp0122988, FBpp0115569, FBpp0113847, FBpp0125256, FBpp0124835
Drosophila melanogaster DMELA 6 FBpp0087786, FBpp0076519, FBpp0073358, FBpp0088492, FBpp0087788, FBpp0087787
Drosophila sechellia DSECH 10 FBpp0194565, FBpp0202537, FBpp0206607, FBpp0205847, FBpp0202538, FBpp0206606, FBpp0194567, FBpp0196341, FBpp0202536, FBpp0196340
Drosophila simulans DSIMU 8 FBpp0212431, FBpp0208996, FBpp0210847, FBpp0208991, FBpp0208997, FBpp0321803, FBpp0318492, FBpp0215432
Drosophila erecta DEREC 6 FBpp0141926, FBpp0141927, FBpp0132990, FBpp0372118, FBpp0136972, FBpp0141925
Drosophila yakuba DYAKU 7 FBpp0356256, FBpp0264231, FBpp0266645, FBpp0264232, FBpp0267203, FBpp0260954, FBpp0264233
Drosophila virilis DVIRI 7 FBpp0236253, FBpp0226577, FBpp0225898, FBpp0394649, FBpp0234922, FBpp0230367, FBpp0236252
Drosophila mojavensis DMOJA 7 FBpp0381694, FBpp0168025, FBpp0161466, FBpp0161152, FBpp0165690, FBpp0169987, FBpp0168026
Drosophila grimshawi DGRIM 6 FBpp0155261, FBpp0151511, FBpp0155260, FBpp0154446, FBpp0420675, FBpp0148609
Lucilia cuprina LCUPR 9 KNC21658, KNC33995, KNC31866, KNC31861, KNC21676, KNC24064, KNC21662, KNC21661, KNC26217
Musca domestica MDOME 14 MDOA013494-PB, MDOA016598-PA, MDOA006402-PA, MDOA005445-PB, MDOA006007-PA, MDOA011389-PA, MDOA002745-PA, MDOA016671-PA, MDOA010575-PA, MDOA014677-PB, MDOA001379-PA, MDOA002468-PB, MDOA008437-PA, MDOA014683-PA
Stomoxys calcitrans SCALC 12 SCAU004566-PA, SCAU003231-PA, SCAU012163-PA, SCAU012605-PA, SCAU015258-PA, SCAU015071-PA, SCAU000910-PA, SCAU004266-PB, SCAU000171-PA, SCAU001267-PA, SCAU002841-PA, SCAU009855-PA
Glossina brevipalpis GBREV 3 GBRI002961-PA, GBRI012972-PA, GBRI004820-PA
Glossina palpalis GPALP 4 GPPI003871-PA, GPPI000893-PA, GPPI035023-PA, GPPI015487-PA
Glossina austeni GAUST 4 GAUT004838-PA, GAUT006757-PA, GAUT032154-PA, GAUT006754-PA
Glossina pallidipes GPALL 3 GPAI005015-PA, GPAI036375-PA, GPAI001864-PA
Glossina morsitans GMORS 1 GMOY009549-PA

Gene tree

Chironomidae-wide analysis

The Orthogroup for the longest transcript (g9462.t1) is OG0000288. Other genes in this orthogroup contains the following. [This data uses ab initio gene models predicted in Yoshida et al 2022, so most genes are not registered in public databases. Please contact the authors for more information on these data.]

Conservation

Organism Abb. ID Ortholog ID
Podonomus sp PODON TRINITY_DN13681_c0_g2_i2.p1, TRINITY_DN60770_c0_g1_i1.p1, TRINITY_DN15238_c0_g1_i2.p1, TRINITY_DN13681_c0_g1_i1.p1, TRINITY_DN791_c0_g1_i10.p1
Parochlus steinenii PSTEI PSG04410
Trissopelopia nemorum TNEMO TRINITY_DN945_c0_g1_i2.p1, TRINITY_DN42861_c0_g1_i1.p1, TRINITY_DN8617_c2_g1_i1.p1
Paraheptagyia tonnoiri PTONN TRINITY_DN14558_c0_g2_i1.p1, TRINITY_DN14558_c0_g1_i1.p1
Telmatogeton pecinata TPECI TRINITY_DN51628_c0_g1_i1.p1, TRINITY_DN11692_c0_g1_i1.p1
Cricotopus draysoni CDRAY TRINITY_DN100565_c0_g1_i1.p1, TRINITY_DN24452_c0_g1_i1.p1, TRINITY_DN93757_c0_g1_i1.p1, TRINITY_DN844_c0_g2_i1.p1, TRINITY_DN3411_c1_g1_i1.p1, TRINITY_DN2539_c0_g1_i2.p1, TRINITY_DN57666_c0_g1_i1.p1, TRINITY_DN11090_c0_g1_i1.p1, TRINITY_DN844_c0_g1_i2.p1, TRINITY_DN844_c2_g1_i1.p2, TRINITY_DN103774_c0_g1_i1.p1, TRINITY_DN2228_c0_g1_i1.p1
Clunio marinus CMARI CRL05860.1, CRL05859.1, CRK97725.1, CRL04926.1
Cardiocladius sp CARDI TRINITY_DN30504_c0_g1_i1.p2
Belgica antarctica BANTA IU25_09854-mRNA-1, IU25_03056-mRNA-1, IU25_03055-mRNA-1, IU25_11440-mRNA-1
Kiefferophyes invenustulus KINVE TRINITY_DN158298_c0_g1_i5.p1, TRINITY_DN89816_c0_g1_i1.p1, TRINITY_DN160596_c0_g2_i1.p1, TRINITY_DN284376_c0_g1_i1.p1, TRINITY_DN160596_c0_g1_i1.p1, TRINITY_DN8750_c0_g1_i8.p1, TRINITY_DN24859_c0_g1_i3.p1
Chironomus riparius CRIPA g294.t1, g8483.t1, g8484.t1, g8481.t1, g3615.t1, g8485.t1, g8482.t1
Chironomus columbiensis CCOLU TRINITY_DN74685_c0_g1_i1.p4, TRINITY_DN11733_c0_g3_i1.p1, TRINITY_DN4780_c0_g1_i2.p1, TRINITY_DN53822_c0_g1_i1.p1, TRINITY_DN6608_c0_g1_i4.p1, TRINITY_DN2835_c0_g1_i28.p1, TRINITY_DN10934_c0_g1_i1.p1, TRINITY_DN11103_c0_g1_i3.p1, TRINITY_DN11733_c0_g2_i2.p1, TRINITY_DN11733_c0_g1_i1.p1, TRINITY_DN17498_c0_g1_i1.p1
Chironomus tentans CTENT g4883.t1, g11638.t1, g11635.t1, g6955.t1, g11634.t1, g4884.t1, g4882.t1, g12324.t1, g1727.t1, g14174.t1, g11636.t1, g11637.t1
Chironomus dilutus CDILU TRINITY_DN1821_c5_g4_i1.p1, TRINITY_DN30025_c0_g1_i1.p1, TRINITY_DN8861_c0_g1_i2.p3, TRINITY_DN1821_c18_g1_i1.p1, TRINITY_DN1084_c0_g1_i10.p1, TRINITY_DN15810_c0_g1_i1.p1, TRINITY_DN1687_c0_g1_i3.p1, TRINITY_DN51431_c0_g1_i1.p1
Polypedilum nubifer PNUBI Pn.05856
Polypedilum vanderplanki PVAND g16550.t1, g9461.t2, g7907.t1, g9462.t1, g9460.t1
Polypedilum pembai PPEMB g8167.t1, g6464.t1, g6738.t1, g8364.t1
Culicoides sonorensis CSONO CSON009787-1, CSON009221-1
Aedes aegypti lvpagwg AAEGYL AAEL009474-PA, AAEL017056-PB, AAEL007039-PB
Anopheles gambiae AGAMB AGAP006343-PA, AGAP006342-PA, AGAP000536-PA

Gene tree

Expression profile for this gene

Gene-level expression profile

Raw TPM values

Expression profile of isoforms

A heatmap representing isoforms with TPM > 0 in at least one sample. Expression profiles were are clustered based on the spearman correlation