General information for g9561
Yuki Yoshida
22/1/2022
Gene loci information
This gene g9561 is located on chr_1: 4062093..4066462 (- strand)
This has not been named
Isoforms of this gene
- There are 2 isoforms that are expressed from this gene.
- The longest transcript is g9561.t1
- List of isoforms
The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively.
KEGG
Orthology
- This gene has been annotated with K03868 (E3 ubiquitin-protein ligase RBX1)
Pathway
- This gene belongs to the following 1 pathways
ko03420
ko04066
ko04110
ko04111
ko04114
ko04120
ko04141
ko04310
ko04341
ko04350
ko04710
ko05131
ko05170
ko05200
ko05211
This gene has too many mapped pathways (>3). Please look at the original KEGG entry above for pathway visualization.
Gene conservation patterns
Diptera wide analysis
The Orthogroup for the longest transcript (g9561.t1) is OG0000239. Other genes in this orthogroup contains the following. This list is ordered by phylogeny determined by OrthoFinder analysis. Genes from ENSEMBL are linked to their corresponding pages. For P. nubifer and P. vanderplanki, they are linked to the Midgebase1 and Midgebase2 pages.
Conservation
Gene tree
Chironomidae-wide analysis
The Orthogroup for the longest transcript (g9561.t1) is OG0000972. Other genes in this orthogroup contains the following. [This data uses ab initio gene models predicted in Yoshida et al 2022, so most genes are not registered in public databases. Please contact the authors for more information on these data.]
Conservation
| Organism | Abb. ID | Ortholog ID |
|---|---|---|
| Podonomus sp | PODON | TRINITY_DN138522_c0_g1_i1.p1, TRINITY_DN1276_c0_g1_i4.p1 |
| Parochlus steinenii | PSTEI | PSG12561, PSG10446 |
| Trissopelopia nemorum | TNEMO | TRINITY_DN1362_c0_g1_i1.p1, TRINITY_DN6153_c0_g1_i5.p1 |
| Paraheptagyia tonnoiri | PTONN | TRINITY_DN3442_c0_g1_i1.p1, TRINITY_DN3543_c0_g1_i3.p1 |
| Telmatogeton pecinata | TPECI | TRINITY_DN16338_c0_g1_i1.p1, TRINITY_DN0_c174_g1_i2.p1, TRINITY_DN2588_c0_g1_i2.p1, TRINITY_DN10387_c0_g1_i1.p1, TRINITY_DN0_c5039_g1_i1.p1 |
| Cricotopus draysoni | CDRAY | TRINITY_DN24008_c0_g1_i1.p1, TRINITY_DN54125_c0_g1_i1.p1, TRINITY_DN100040_c0_g1_i1.p4, TRINITY_DN96353_c0_g1_i1.p1, TRINITY_DN696_c0_g1_i3.p1, TRINITY_DN10432_c0_g1_i1.p1, TRINITY_DN21644_c0_g1_i1.p1 |
| Clunio marinus | CMARI | CRL04209.1, CRK96407.1 |
| Cardiocladius sp | CARDI | TRINITY_DN298_c0_g1_i3.p1, TRINITY_DN2046_c0_g1_i1.p1 |
| Belgica antarctica | BANTA | IU25_02081-mRNA-1, IU25_10824-mRNA-1 |
| Kiefferophyes invenustulus | KINVE | TRINITY_DN64648_c0_g1_i1.p1, TRINITY_DN17135_c1_g1_i1.p2, TRINITY_DN52736_c0_g1_i1.p1, TRINITY_DN81_c0_g2_i1.p1, TRINITY_DN16766_c7_g1_i1.p1, TRINITY_DN81_c0_g3_i1.p1, TRINITY_DN241333_c0_g1_i1.p1, TRINITY_DN224446_c0_g1_i1.p3, TRINITY_DN81_c0_g5_i1.p1, TRINITY_DN16766_c0_g1_i4.p1 |
| Chironomus riparius | CRIPA | none |
| Chironomus columbiensis | CCOLU | TRINITY_DN19146_c0_g1_i1.p1, TRINITY_DN3707_c0_g1_i3.p1, TRINITY_DN988_c0_g1_i1.p1, TRINITY_DN21974_c0_g1_i1.p1 |
| Chironomus tentans | CTENT | g6927.t1 |
| Chironomus dilutus | CDILU | TRINITY_DN8572_c1_g1_i1.p1, TRINITY_DN7662_c0_g1_i2.p1 |
| Polypedilum nubifer | PNUBI | Pn.00414, Pn.03547 |
| Polypedilum vanderplanki | PVAND | g9561.t1, g16841.t1 |
| Polypedilum pembai | PPEMB | g3295.t1 |
| Culicoides sonorensis | CSONO | CSON015475-1, CSON003242-1, CSON004030-1 |
| Aedes aegypti lvpagwg | AAEGYL | AAEL018336-PA, AAEL004691-PB |
| Anopheles gambiae | AGAMB | AGAP005562-PA, AGAP005202-PA |
Gene tree
Expression profile for this gene
Gene-level expression profile
Raw TPM values
Expression profile of isoforms
A heatmap representing isoforms with TPM > 0 in at least one sample. Expression profiles were are clustered based on the spearman correlation
