Gene loci information

Isoforms of this gene

  • There are 7 isoforms that are expressed from this gene.
  • The longest transcript is g9936.t1
  • List of isoforms

g9936.t1, g9936.t6, g9936.t8, g9936.t10, g9936.t11, g9936.t12, g9936.t13

The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively.

KEGG

Orthology

Pathway

  • This gene belongs to the following 1 pathways
ko04010
ko04013
ko04014
ko04015
ko04024
ko04062
ko04071
ko04145
ko04151
ko04310
ko04360
ko04361
ko04370
ko04380
ko04510
ko04520
ko04530
ko04613
ko04620
ko04650
ko04662
ko04664
ko04666
ko04670
ko04722
ko04810
ko04932
ko04933
ko04972
ko05014
ko05020
ko05022
ko05100
ko05120
ko05130
ko05131
ko05132
ko05135
ko05163
ko05167
ko05169
ko05170
ko05200
ko05203
ko05205
ko05208
ko05210
ko05211
ko05212
ko05231
ko05415
ko05416
ko05417
ko05418

This gene has too many mapped pathways (>3). Please look at the original KEGG entry above for pathway visualization.

Gene conservation patterns

Diptera wide analysis

The Orthogroup for the longest transcript (g9936.t1) is OG0000071. Other genes in this orthogroup contains the following. This list is ordered by phylogeny determined by OrthoFinder analysis. Genes from ENSEMBL are linked to their corresponding pages. For P. nubifer and P. vanderplanki, they are linked to the Midgebase1 and Midgebase2 pages.

Conservation

Organism Abb. ID No. Orthologs Ortholog ID
Atta cephalotes ACEPH 6 XP_012059013.1, XP_012060487.1, XP_012057210.1, XP_012060856.1, XP_012060241.1, XP_012064477.1
Apis mellifera AMELL 6 GB55933-PA, GB49368-PA, GB45558-PA, GB50631-PA, GB47431-PA, GB45657-PA
Culicoides sonorensis CSONO 7 CSON009673-1, CSON010994-1, CSON001293-1, CSON006993-1, CSON002915-1, CSON008564-1, CSON011576-1
Polypedilum nubifer PNUBI 6 Pn.02356, Pn.01366, Pn.12339, Pn.02541, Pn.02540, Pn.15420
Polypedilum vanderplanki PVAND 6 g9936.t1, g8352.t14, g359.t1, g2677.t5, g9212.t1, g14597.t1
Polypedilum pembai PPEMB 7 g3037.t1, g2277.t1, g1925.t1, g12160.t1, g6670.t1, g10131.t1, g8281.t1
Belgica antarctica BANTA 3 IU25_03770-mRNA-1, IU25_11982-mRNA-1, IU25_01421-mRNA-1
Clunio marinus CMARI 4 CRK97775.1, CRK87020.1, CRK86914.1, CRL08559.1
Aedes aegypti lvpagwg AAEGYL 5 AAEL002999-PA, AAEL015271-PB, AAEL008543-PA, AAEL013139-PD, AAEL009733-PA
Culex quinquefasciatus quinquefasciatus CQUINQ 3 EDS31302.1, EDS38929.1, EDS31301.1
Culex quinquefasciatus CQUIN 3 CPIJ001703-PA, CPIJ013262-PA, CPIJ001702-PA
Anopheles atroparvus AATRO 7 AATE009987-PA, AATE019567-PA, AATE015651-PA, AATE016482-PA, AATE016429-PA, AATE004660-PA, AATE001263-PA
Anopheles sinensis china ASINEC 4 ASIC012332-PA, ASIC014720-PA, ASIC009106-PA, ASIC003093-PA
Anopheles dirus ADIRU 7 ADIR006397-PA, ADIR003355-PA, ADIR002385-PA, ADIR008868-PA, ADIR003357-PA, ADIR008797-PA, ADIR003356-PA
Anopheles farauti AFARA 7 AFAF013386-PA, AFAF005996-PA, AFAF006844-PA, AFAF000159-PA, AFAF011006-PA, AFAF003135-PA, AFAF015417-PA
Anopheles epiroticus AEPIR 7 AEPI004575-PA, AEPI002745-PA, AEPI007306-PA, AEPI007304-PA, AEPI006131-PA, AEPI007305-PA, AEPI001429-PA
Anopheles christyi ACHRI 6 ACHR009674-PA, ACHR008280-PA, ACHR010194-PA, ACHR014333-PA, ACHR007173-PA, ACHR004177-PA
Anopheles merus AMERU 5 AMEM019223-PA, AMEM014447-PA, AMEM012498-PA, AMEM013956-PA, AMEM007819-PA
Anopheles melas AMELA 7 AMEC008284-PA, AMEC017757-PA, AMEC011868-PA, AMEC003995-PA, AMEC001452-PA, AMEC021343-PA, AMEC002012-PA
Anopheles arabiensis AARAB 5 AARA004432-PA, AARA018224-PA, AARA002354-PA, AARA002021-PA, AARA003021-PA
Anopheles coluzzii ACOLU 5 ACOM039158-PA, ACOM036987-PA, ACOM034321-PA, ACOM035201-PA, ACOM024086-PA
Anopheles coluzzii ngousso ACOLUN 5 ACON029473-PA, ACON003931-PA, ACON002440-PA, ACON001573-PA, ACON005160-PA
Anopheles gambiae AGAMB 5 AGAP005160-PA, AGAP002440-PA, AGAP003931-PA, AGAP001573-PA, AGAP029473-PA
Anopheles quadriannulatus AQUAD 7 AQUA009964-PA, AQUA009522-PA, AQUA000444-PA, AQUA009129-PA, AQUA009128-PA, AQUA009127-PA, AQUA007640-PA
Anopheles minimus AMINI 7 AMIN000290-PA, AMIN000289-PA, AMIN000288-PA, AMIN011388-PA, AMIN003391-PA, AMIN002706-PA, AMIN007321-PA
Anopheles culicifacies ACULI 6 ACUA002101-PA, ACUA018812-PA, ACUA026596-PA, ACUA019774-PA, ACUA000294-PA, ACUA017662-PA
Anopheles funestus AFUNE 5 AFUN020747-PA, AFUN020622-PA, AFUN020083-PA, AFUN001652-PA, AFUN003721-PA
Anopheles stephensi indian ASTEPI 5 ASTEI05521-PA, ASTEI02066-PA, ASTEI00731-PA, ASTEI00945-PA, ASTEI08263-PA
Anopheles stephensi ASTEP 7 ASTE002152-PA, ASTE002151-PA, ASTE005128-PB, ASTE002150-PA, ASTE009127-PA, ASTE000190-PA, ASTE010709-PA
Anopheles albimanus AALBI 5 AALB002947-PA, AALB008250-PA, AALB008249-PA, AALB008251-PA, AALB002472-PA
Anopheles darlingi ADARL 5 ADAC008663-PA, ADAC004723-PA, ADAC008141-PA, ADAC006233-PA, ADAC002916-PA
Drosophila willistoni DWILL 6 FBpp0246455, FBpp0240903, FBpp0252280, FBpp0245948, FBpp0374999, FBpp0248970
Drosophila pseudoobscura DPSEU 6 FBpp0332740, FBpp0278749, FBpp0331896, FBpp0332747, FBpp0283299, FBpp0285703
Drosophila persimilis DPERS 8 FBpp0182372, FBpp0184662, FBpp0188360, FBpp0182168, FBpp0182169, FBpp0182170, FBpp0177811, FBpp0180185
Drosophila ananassae DANAN 6 FBpp0341954, FBpp0345461, FBpp0123615, FBpp0341426, FBpp0119486, FBpp0347978
Drosophila melanogaster DMELA 6 FBpp0110080, FBpp0074520, FBpp0084561, FBpp0072614, FBpp0086353, FBpp0076577
Drosophila sechellia DSECH 8 FBpp0197823, FBpp0192955, FBpp0195236, FBpp0203134, FBpp0195702, FBpp0192885, FBpp0192886, FBpp0204460
Drosophila simulans DSIMU 6 FBpp0325429, FBpp0322800, FBpp0315065, FBpp0209560, FBpp0326512, FBpp0219745
Drosophila erecta DEREC 6 FBpp0133509, FBpp0139112, FBpp0136891, FBpp0368486, FBpp0137794, FBpp0130109
Drosophila yakuba DYAKU 6 FBpp0256761, FBpp0268758, FBpp0262840, FBpp0260877, FBpp0364380, FBpp0356955
Drosophila virilis DVIRI 7 FBpp0224882, FBpp0394033, FBpp0392047, FBpp0397444, FBpp0396741, FBpp0394881, FBpp0392154
Drosophila mojavensis DMOJA 7 FBpp0383909, FBpp0382697, FBpp0171232, FBpp0386249, FBpp0164284, FBpp0160326, FBpp0387941
Drosophila grimshawi DGRIM 7 FBpp0155973, FBpp0420804, FBpp0413975, FBpp0150519, FBpp0149912, FBpp0153180, FBpp0146397
Lucilia cuprina LCUPR 4 KNC23156, KNC34296, KNC29578, KNC24852
Musca domestica MDOME 7 MDOA011413-PB, MDOA014499-PA, MDOA012889-PA, MDOA011601-PA, MDOA010748-PA, MDOA007938-PA, MDOA004511-PA
Stomoxys calcitrans SCALC 5 SCAU015022-PA, SCAU011965-PA, SCAU014646-PA, SCAU012170-PB, SCAU006356-PA
Glossina brevipalpis GBREV 8 GBRI004481-PA, GBRI016707-PA, GBRI013930-PA, GBRI015842-PA, GBRI024531-PA, GBRI023972-PA, GBRI004495-PA, GBRI015073-PA
Glossina palpalis GPALP 7 GPPI041244-PA, GPPI002359-PA, GPPI027094-PA, GPPI025996-PA, GPPI036806-PA, GPPI030576-PA, GPPI002377-PA
Glossina austeni GAUST 8 GAUT014536-PA, GAUT014218-PA, GAUT048293-PA, GAUT008915-PA, GAUT000616-PA, GAUT034276-PA, GAUT048294-PA, GAUT000218-PA
Glossina pallidipes GPALL 7 GPAI031202-PA, GPAI011502-PA, GPAI031203-PA, GPAI007260-PA, GPAI006121-PA, GPAI035755-PA, GPAI006594-PA
Glossina morsitans GMORS 6 GMOY003464-PA, GMOY002179-PA, GMOY011753-PA, GMOY006194-PA, GMOY004245-PA, GMOY010035-PA

Gene tree

Chironomidae-wide analysis

The Orthogroup for the longest transcript (g9936.t1) is OG0000512. Other genes in this orthogroup contains the following. [This data uses ab initio gene models predicted in Yoshida et al 2022, so most genes are not registered in public databases. Please contact the authors for more information on these data.]

Conservation

Organism Abb. ID Ortholog ID
Podonomus sp PODON TRINITY_DN8681_c0_g1_i7.p1, TRINITY_DN22916_c0_g1_i4.p1, TRINITY_DN929_c0_g1_i6.p1, TRINITY_DN326_c0_g1_i38.p1
Parochlus steinenii PSTEI none
Trissopelopia nemorum TNEMO TRINITY_DN6308_c0_g1_i1.p1, TRINITY_DN5077_c0_g2_i1.p1, TRINITY_DN5077_c0_g1_i2.p1, TRINITY_DN21001_c0_g1_i1.p1
Paraheptagyia tonnoiri PTONN TRINITY_DN516_c4_g1_i1.p1, TRINITY_DN5547_c0_g2_i1.p1
Telmatogeton pecinata TPECI TRINITY_DN697_c0_g2_i3.p1, TRINITY_DN95_c0_g5_i1.p1
Cricotopus draysoni CDRAY TRINITY_DN36779_c0_g1_i1.p1, TRINITY_DN36087_c0_g1_i1.p1, TRINITY_DN19784_c0_g1_i1.p1, TRINITY_DN5086_c0_g1_i6.p1, TRINITY_DN103711_c0_g1_i1.p1, TRINITY_DN70660_c0_g1_i1.p2, TRINITY_DN5699_c0_g1_i1.p1, TRINITY_DN87119_c0_g1_i1.p1, TRINITY_DN103908_c0_g1_i1.p1, TRINITY_DN42206_c0_g1_i1.p1
Clunio marinus CMARI CRK97775.1, CRK86914.1
Cardiocladius sp CARDI TRINITY_DN2996_c0_g1_i4.p1, TRINITY_DN227_c0_g6_i1.p1
Belgica antarctica BANTA IU25_01421-mRNA-1
Kiefferophyes invenustulus KINVE TRINITY_DN2367_c0_g1_i8.p1, TRINITY_DN2367_c0_g2_i2.p1, TRINITY_DN271130_c0_g1_i1.p1, TRINITY_DN545_c0_g1_i15.p1
Chironomus riparius CRIPA g12307.t1, g4647.t1, g10031.t1, g12306.t1, g1316.t1, g17686.t1
Chironomus columbiensis CCOLU TRINITY_DN51040_c0_g1_i1.p1, TRINITY_DN16188_c0_g1_i3.p1, TRINITY_DN68023_c0_g1_i1.p1, TRINITY_DN53937_c0_g1_i1.p1, TRINITY_DN79671_c0_g1_i1.p1, TRINITY_DN2005_c0_g1_i1.p1, TRINITY_DN16188_c1_g1_i1.p1, TRINITY_DN51040_c1_g1_i1.p1
Chironomus tentans CTENT g8533.t1, g5649.t1, g8535.t1, g8534.t1, g6727.t1, g8532.t1
Chironomus dilutus CDILU TRINITY_DN3396_c0_g1_i2.p1, TRINITY_DN11243_c0_g1_i1.p1, TRINITY_DN7801_c0_g1_i4.p1, TRINITY_DN14509_c0_g1_i1.p1, TRINITY_DN8508_c0_g2_i1.p1
Polypedilum nubifer PNUBI Pn.02356, Pn.12339, Pn.02541, Pn.02540
Polypedilum vanderplanki PVAND g9936.t1, g2677.t5, g9212.t1, g14597.t1
Polypedilum pembai PPEMB g3037.t1, g2277.t1, g1925.t1, g10131.t1
Culicoides sonorensis CSONO CSON001293-1, CSON008564-1
Aedes aegypti lvpagwg AAEGYL AAEL008543-PA, AAEL009733-PA
Anopheles gambiae AGAMB AGAP002440-PA, AGAP029473-PA

Gene tree

Expression profile for this gene

Gene-level expression profile

Raw TPM values

Expression profile of isoforms

A heatmap representing isoforms with TPM > 0 in at least one sample. Expression profiles were are clustered based on the spearman correlation