Gene loci information

Isoforms of this gene

  • There are 3 isoforms that are expressed from this gene.
  • The longest transcript is g10273.t1
  • List of isoforms

g10273.t1, g10273.t2, g10273.t3

The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively.

KEGG

Orthology

Pathway

  • This gene belongs to the following 1 pathways
ko04550

Gene conservation patterns

Diptera wide analysis

The Orthogroup for the longest transcript (g10273.t1) is OG0000261. Other genes in this orthogroup contains the following. This list is ordered by phylogeny determined by OrthoFinder analysis. Genes from ENSEMBL are linked to their corresponding pages. For P. nubifer and P. vanderplanki, they are linked to the Midgebase1 and Midgebase2 pages.

Conservation

Organism Abb. ID No. Orthologs Ortholog ID
Atta cephalotes ACEPH 4 XP_012056337.1, XP_012054367.1, XP_012056336.1, XP_012061654.1
Apis mellifera AMELL 4 GB48262-PA, GB47182-PA, GB46167-PA, GB48263-PA
Culicoides sonorensis CSONO 3 CSON011999-1, CSON012000-1, CSON013887-1
Polypedilum nubifer PNUBI 3 Pn.02853, Pn.02934, Pn.01054
Polypedilum vanderplanki PVAND 3 g7285.t1, g7286.t1, g10273.t1
Polypedilum pembai PPEMB 3 g3649.t1, g1134.t1, g1133.t1
Belgica antarctica BANTA 3 IU25_04109-mRNA-1, IU25_07099-mRNA-1, IU25_07100-mRNA-1
Clunio marinus CMARI 4 CRK97202.1, CRK95916.1, CRK95915.1, CRK95920.1
Aedes aegypti lvpagwg AAEGYL 2 AAEL011178-PA, AAEL006839-PB
Culex quinquefasciatus quinquefasciatus CQUINQ 3 EDS41703.1, EDS27726.1, EDS41706.1
Culex quinquefasciatus CQUIN 3 CPIJ015238-PA, CPIJ015235-PA, CPIJ018674-PA
Anopheles atroparvus AATRO 2 AATE019166-PA, AATE002363-PA
Anopheles sinensis china ASINEC 3 ASIC010554-PA, ASIC003633-PA, ASIC003617-PA
Anopheles dirus ADIRU 3 ADIR010331-PA, ADIR007416-PA, ADIR007417-PA
Anopheles farauti AFARA 3 AFAF006738-PA, AFAF010908-PA, AFAF000652-PA
Anopheles epiroticus AEPIR 4 AEPI005451-PA, AEPI000915-PA, AEPI000269-PA, AEPI010988-PA
Anopheles christyi ACHRI 2 ACHR002088-PA, ACHR008554-PA
Anopheles merus AMERU 2 AMEM008641-PA, AMEM019215-PA
Anopheles melas AMELA 4 AMEC005514-PA, AMEC005310-PA, AMEC014754-PA, AMEC020845-PA
Anopheles arabiensis AARAB 3 AARA000910-PA, AARA004332-PA, AARA008282-PA
Anopheles coluzzii ACOLU 2 ACOM036844-PA, ACOM039800-PA
Anopheles coluzzii ngousso ACOLUN 2 ACON002533-PA, ACON006403-PA
Anopheles gambiae AGAMB 2 AGAP006403-PA, AGAP002533-PA
Anopheles quadriannulatus AQUAD 3 AQUA000961-PA, AQUA000960-PA, AQUA006971-PA
Anopheles minimus AMINI 2 AMIN015749-PA, AMIN002543-PA
Anopheles culicifacies ACULI 5 ACUA025086-PA, ACUA021787-PA, ACUA009656-PA, ACUA007121-PA, ACUA009046-PA
Anopheles funestus AFUNE 2 AFUN009092-PA, AFUN020073-PA
Anopheles stephensi indian ASTEPI 3 ASTEI11223-PA, ASTEI10636-PA, ASTEI07982-PA
Anopheles stephensi ASTEP 4 ASTE008988-PA, ASTE000704-PA, ASTE008987-PA, ASTE008989-PA
Anopheles albimanus AALBI 3 AALB004653-PA, AALB004654-PA, AALB009175-PA
Anopheles darlingi ADARL 2 ADAC007247-PA, ADAC009414-PA
Drosophila willistoni DWILL 3 FBpp0379171, FBpp0375016, FBpp0249462
Drosophila pseudoobscura DPSEU 3 FBpp0277688, FBpp0286769, FBpp0331430
Drosophila persimilis DPERS 3 FBpp0174701, FBpp0181977, FBpp0175593
Drosophila ananassae DANAN 3 FBpp0348326, FBpp0127113, FBpp0115183
Drosophila melanogaster DMELA 3 FBpp0075071, FBpp0303463, FBpp0086911
Drosophila sechellia DSECH 4 FBpp0207123, FBpp0201795, FBpp0201796, FBpp0202915
Drosophila simulans DSIMU 3 FBpp0213051, FBpp0318843, FBpp0318384
Drosophila erecta DEREC 3 FBpp0367974, FBpp0132112, FBpp0141079
Drosophila yakuba DYAKU 3 FBpp0264874, FBpp0258414, FBpp0257520
Drosophila virilis DVIRI 3 FBpp0227239, FBpp0399207, FBpp0398285
Drosophila mojavensis DMOJA 2 FBpp0387214, FBpp0165787
Drosophila grimshawi DGRIM 5 FBpp0405776, FBpp0421958, FBpp0149824, FBpp0421414, FBpp0415933
Lucilia cuprina LCUPR 4 KNC21341, KNC32105, KNC21342, KNC32280
Musca domestica MDOME 3 MDOA004905-PA, MDOA009449-PA, MDOA013674-PB
Stomoxys calcitrans SCALC 3 SCAU004196-PA, SCAU013562-PB, SCAU012028-PA
Glossina brevipalpis GBREV 4 GBRI034472-PA, GBRI021634-PA, GBRI018611-PA, GBRI021635-PA
Glossina palpalis GPALP 2 GPPI041563-PA, GPPI041546-PA
Glossina austeni GAUST 2 GAUT014171-PA, GAUT014170-PA
Glossina pallidipes GPALL 3 GPAI038413-PA, GPAI038412-PA, GPAI036159-PA
Glossina morsitans GMORS 3 GMOY008708-PA, GMOY013078-PA, GMOY008709-PA

Gene tree

Chironomidae-wide analysis

The Orthogroup for the longest transcript (g10273.t1) is OG0008513. Other genes in this orthogroup contains the following. [This data uses ab initio gene models predicted in Yoshida et al 2022, so most genes are not registered in public databases. Please contact the authors for more information on these data.]

Conservation

Organism Abb. ID Ortholog ID
Podonomus sp PODON TRINITY_DN8413_c0_g1_i4.p1
Parochlus steinenii PSTEI PSG01110
Trissopelopia nemorum TNEMO TRINITY_DN10604_c1_g1_i1.p1
Paraheptagyia tonnoiri PTONN TRINITY_DN3766_c0_g1_i2.p1
Telmatogeton pecinata TPECI TRINITY_DN0_c12933_g1_i1.p1, TRINITY_DN6109_c0_g1_i16.p1
Cricotopus draysoni CDRAY TRINITY_DN16789_c0_g1_i1.p1
Clunio marinus CMARI CRK97202.1
Cardiocladius sp CARDI TRINITY_DN3322_c0_g1_i3.p1
Belgica antarctica BANTA IU25_04109-mRNA-1
Kiefferophyes invenustulus KINVE TRINITY_DN6295_c0_g1_i9.p1
Chironomus riparius CRIPA g3958.t1
Chironomus columbiensis CCOLU TRINITY_DN1782_c0_g1_i1.p1
Chironomus tentans CTENT g778.t1
Chironomus dilutus CDILU none
Polypedilum nubifer PNUBI Pn.02934
Polypedilum vanderplanki PVAND g10273.t1
Polypedilum pembai PPEMB g3649.t1
Culicoides sonorensis CSONO CSON013887-1
Aedes aegypti lvpagwg AAEGYL AAEL006839-PB
Anopheles gambiae AGAMB AGAP002533-PA

Gene tree

Expression profile for this gene

Gene-level expression profile

Raw TPM values

Expression profile of isoforms

A heatmap representing isoforms with TPM > 0 in at least one sample. Expression profiles were are clustered based on the spearman correlation