Gene loci information

Isoforms of this gene

  • There are 4 isoforms that are expressed from this gene.
  • The longest transcript is g11568.t1
  • List of isoforms

g11568.t1, g11568.t3, g11568.t4, g11568.t5

The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively.

KEGG

Orthology

Pathway

  • This gene belongs to the following 1 pathways
ko04310

Gene conservation patterns

Diptera wide analysis

The Orthogroup for the longest transcript (g11568.t1) is OG0003069. Other genes in this orthogroup contains the following. This list is ordered by phylogeny determined by OrthoFinder analysis. Genes from ENSEMBL are linked to their corresponding pages. For P. nubifer and P. vanderplanki, they are linked to the Midgebase1 and Midgebase2 pages.

Conservation

Organism Abb. ID No. Orthologs Ortholog ID
Atta cephalotes ACEPH 1 XP_012057450.1
Apis mellifera AMELL 1 GB42894-PA
Culicoides sonorensis CSONO 2 CSON008826-1, CSON009754-1
Polypedilum nubifer PNUBI 1 Pn.05071
Polypedilum vanderplanki PVAND 1 g11568.t1
Polypedilum pembai PPEMB 2 g5753.t1, g4904.t1
Belgica antarctica BANTA 1 IU25_05093-mRNA-1
Clunio marinus CMARI 1 CRK98086.1
Aedes aegypti lvpagwg AAEGYL 2 AAEL028110-PH, AAEL026623-PA
Culex quinquefasciatus quinquefasciatus CQUINQ 2 EDS33188.1, EDS33187.1
Culex quinquefasciatus CQUIN 2 CPIJ002006-PA, CPIJ002005-PA
Anopheles atroparvus AATRO 1 AATE006776-PA
Anopheles sinensis china ASINEC 1 ASIC007721-PA
Anopheles dirus ADIRU 1 ADIR008394-PA
Anopheles farauti AFARA 1 AFAF013518-PA
Anopheles epiroticus AEPIR 1 AEPI002258-PA
Anopheles christyi ACHRI 1 ACHR001515-PA
Anopheles merus AMERU 1 AMEM004873-PA
Anopheles melas AMELA 1 AMEC018455-PA
Anopheles arabiensis AARAB 1 AARA015609-PA
Anopheles coluzzii ACOLU 1 ACOM035812-PA
Anopheles coluzzii ngousso ACOLUN 1 ACON029112-PA
Anopheles gambiae AGAMB 1 AGAP029112-PA
Anopheles quadriannulatus AQUAD 1 AQUA003805-PA
Anopheles minimus AMINI 1 AMIN000349-PA
Anopheles culicifacies ACULI 1 ACUA024287-PA
Anopheles funestus AFUNE 1 AFUN019929-PB
Anopheles stephensi indian ASTEPI 1 ASTEI08879-PA
Anopheles stephensi ASTEP 1 ASTE007434-PA
Anopheles albimanus AALBI 1 AALB008869-PA
Anopheles darlingi ADARL 1 ADAC010399-PA
Drosophila willistoni DWILL 1 FBpp0377723
Drosophila pseudoobscura DPSEU 1 FBpp0329966
Drosophila persimilis DPERS 1 FBpp0178497
Drosophila ananassae DANAN 1 FBpp0341475
Drosophila melanogaster DMELA 1 FBpp0292356
Drosophila sechellia DSECH 1 FBpp0200464
Drosophila simulans DSIMU 1 FBpp0317394
Drosophila erecta DEREC 1 FBpp0370583
Drosophila yakuba DYAKU 1 FBpp0356288
Drosophila virilis DVIRI 1 FBpp0390671
Drosophila mojavensis DMOJA 1 FBpp0386104
Drosophila grimshawi DGRIM 1 FBpp0412387
Lucilia cuprina LCUPR 1 KNC34099
Musca domestica MDOME 1 MDOA013760-PA
Stomoxys calcitrans SCALC 1 SCAU004815-PA
Glossina brevipalpis GBREV 1 GBRI014654-PA
Glossina palpalis GPALP 1 GPPI007948-PA
Glossina austeni GAUST 1 GAUT033119-PA
Glossina pallidipes GPALL 1 GPAI012408-PA
Glossina morsitans GMORS 1 GMOY002551-PA

Gene tree

Chironomidae-wide analysis

The Orthogroup for the longest transcript (g11568.t1) is OG0001956. Other genes in this orthogroup contains the following. [This data uses ab initio gene models predicted in Yoshida et al 2022, so most genes are not registered in public databases. Please contact the authors for more information on these data.]

Conservation

Organism Abb. ID Ortholog ID
Podonomus sp PODON TRINITY_DN139110_c0_g1_i1.p2, TRINITY_DN51913_c0_g1_i1.p2, TRINITY_DN195_c0_g1_i3.p1, TRINITY_DN5690_c1_g1_i1.p1, TRINITY_DN5690_c0_g1_i1.p1, TRINITY_DN19578_c0_g1_i1.p1, TRINITY_DN5690_c2_g1_i1.p1, TRINITY_DN39142_c0_g1_i1.p1, TRINITY_DN78500_c0_g1_i1.p1, TRINITY_DN30789_c0_g1_i1.p4, TRINITY_DN195_c13_g1_i1.p2, TRINITY_DN195_c13_g2_i1.p1
Parochlus steinenii PSTEI PSG05082
Trissopelopia nemorum TNEMO TRINITY_DN6455_c0_g5_i2.p1
Paraheptagyia tonnoiri PTONN TRINITY_DN336_c0_g3_i3.p1
Telmatogeton pecinata TPECI TRINITY_DN3113_c0_g1_i6.p1
Cricotopus draysoni CDRAY TRINITY_DN20811_c0_g1_i1.p1
Clunio marinus CMARI CRK98086.1
Cardiocladius sp CARDI TRINITY_DN20874_c0_g2_i1.p1, TRINITY_DN25020_c0_g1_i1.p2, TRINITY_DN20874_c0_g1_i1.p1, TRINITY_DN50538_c0_g1_i1.p1
Belgica antarctica BANTA IU25_05093-mRNA-1
Kiefferophyes invenustulus KINVE TRINITY_DN793_c2_g1_i1.p1, TRINITY_DN32578_c0_g1_i4.p1, TRINITY_DN793_c0_g2_i2.p1
Chironomus riparius CRIPA g513.t1
Chironomus columbiensis CCOLU TRINITY_DN24357_c0_g1_i2.p1
Chironomus tentans CTENT g11271.t1, g17345.t1
Chironomus dilutus CDILU TRINITY_DN5519_c0_g1_i1.p1
Polypedilum nubifer PNUBI Pn.05071
Polypedilum vanderplanki PVAND g11568.t1
Polypedilum pembai PPEMB g5753.t1, g4904.t1
Culicoides sonorensis CSONO CSON008826-1, CSON009754-1
Aedes aegypti lvpagwg AAEGYL AAEL028110-PH, AAEL025298-PA, AAEL026623-PA
Anopheles gambiae AGAMB AGAP029112-PA

Gene tree

Expression profile for this gene

Gene-level expression profile

Raw TPM values

Expression profile of isoforms

A heatmap representing isoforms with TPM > 0 in at least one sample. Expression profiles were are clustered based on the spearman correlation