Gene loci information

Isoforms of this gene

  • There are 3 isoforms that are expressed from this gene.
  • The longest transcript is g11605.t1
  • List of isoforms

g11605.t1, g11605.t3, g11605.t4

The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively.

KEGG

Orthology

Pathway

  • This gene belongs to the following 1 pathways
ko00230
ko00261
ko00450
ko00920
ko01100
ko01110
ko01120

This gene has too many mapped pathways (>3). Please look at the original KEGG entry above for pathway visualization.

Gene conservation patterns

Diptera wide analysis

The Orthogroup for the longest transcript (g11605.t1) is OG0002902. Other genes in this orthogroup contains the following. This list is ordered by phylogeny determined by OrthoFinder analysis. Genes from ENSEMBL are linked to their corresponding pages. For P. nubifer and P. vanderplanki, they are linked to the Midgebase1 and Midgebase2 pages.

Conservation

Organism Abb. ID No. Orthologs Ortholog ID
Atta cephalotes ACEPH 2 XP_012055875.1, XP_012062574.1
Apis mellifera AMELL 2 GB48782-PA, GB48066-PA
Culicoides sonorensis CSONO 2 CSON009672-1, CSON009550-1
Polypedilum nubifer PNUBI 1 Pn.02221
Polypedilum vanderplanki PVAND 1 g11605.t1
Polypedilum pembai PPEMB 1 g7973.t1
Belgica antarctica BANTA 2 IU25_07056-mRNA-1, IU25_13203-mRNA-1
Clunio marinus CMARI 1 CRK99705.1
Aedes aegypti lvpagwg AAEGYL 1 AAEL005605-PC
Culex quinquefasciatus quinquefasciatus CQUINQ 1 EDS26267.1
Culex quinquefasciatus CQUIN 1 CPIJ006069-PA
Anopheles atroparvus AATRO 1 AATE015622-PA
Anopheles sinensis china ASINEC 1 ASIC011550-PA
Anopheles dirus ADIRU 1 ADIR009979-PA
Anopheles farauti AFARA 1 AFAF000515-PA
Anopheles epiroticus AEPIR 1 AEPI009659-PA
Anopheles christyi ACHRI 1 ACHR001291-PA
Anopheles merus AMERU 1 AMEM007525-PA
Anopheles melas AMELA 1 AMEC019160-PA
Anopheles arabiensis AARAB 1 AARA001729-PA
Anopheles coluzzii ACOLU 1 ACOM033861-PA
Anopheles coluzzii ngousso ACOLUN 1 ACON001256-PB
Anopheles gambiae AGAMB 1 AGAP001256-PC
Anopheles quadriannulatus AQUAD 1 AQUA006453-PA
Anopheles minimus AMINI 1 AMIN015832-PB
Anopheles culicifacies ACULI 1 ACUA023470-PA
Anopheles funestus AFUNE 1 AFUN021243-PB
Anopheles stephensi indian ASTEPI 1 ASTEI10554-PA
Anopheles stephensi ASTEP 1 ASTE005968-PA
Anopheles albimanus AALBI 1 AALB009324-PA
Anopheles darlingi ADARL 1 ADAC009249-PA
Drosophila willistoni DWILL 1 FBpp0246117
Drosophila pseudoobscura DPSEU 1 FBpp0329078
Drosophila persimilis DPERS 1 FBpp0179848
Drosophila ananassae DANAN 1 FBpp0347182
Drosophila melanogaster DMELA 1 FBpp0074657
Drosophila sechellia DSECH 1 FBpp0201146
Drosophila simulans DSIMU 1 FBpp0327481
Drosophila erecta DEREC 1 FBpp0369398
Drosophila yakuba DYAKU 1 FBpp0352648
Drosophila virilis DVIRI 1 FBpp0396397
Drosophila mojavensis DMOJA 1 FBpp0386446
Drosophila grimshawi DGRIM 1 FBpp0403863
Lucilia cuprina LCUPR 1 KNC30915
Musca domestica MDOME 1 MDOA003848-PA
Stomoxys calcitrans SCALC 1 SCAU006352-PA
Glossina brevipalpis GBREV 2 GBRI000311-PA, GBRI040227-PA
Glossina palpalis GPALP 1 GPPI045777-PA
Glossina austeni GAUST 1 GAUT012101-PA
Glossina pallidipes GPALL 1 GPAI023373-PA
Glossina morsitans GMORS 1 GMOY011232-PA

Gene tree

Chironomidae-wide analysis

The Orthogroup for the longest transcript (g11605.t1) is OG0004501. Other genes in this orthogroup contains the following. [This data uses ab initio gene models predicted in Yoshida et al 2022, so most genes are not registered in public databases. Please contact the authors for more information on these data.]

Conservation

Organism Abb. ID Ortholog ID
Podonomus sp PODON TRINITY_DN1532_c0_g1_i2.p1, TRINITY_DN21720_c0_g1_i3.p1
Parochlus steinenii PSTEI PSG08878
Trissopelopia nemorum TNEMO TRINITY_DN2225_c0_g2_i1.p1
Paraheptagyia tonnoiri PTONN TRINITY_DN1939_c0_g1_i6.p1
Telmatogeton pecinata TPECI TRINITY_DN4791_c0_g1_i5.p1
Cricotopus draysoni CDRAY TRINITY_DN77108_c0_g1_i1.p1, TRINITY_DN104148_c0_g1_i1.p1, TRINITY_DN4758_c0_g1_i1.p1, TRINITY_DN33992_c0_g1_i1.p2, TRINITY_DN4980_c0_g1_i2.p1
Clunio marinus CMARI CRK99705.1
Cardiocladius sp CARDI TRINITY_DN4306_c0_g1_i15.p1
Belgica antarctica BANTA IU25_07056-mRNA-1, IU25_13203-mRNA-1
Kiefferophyes invenustulus KINVE TRINITY_DN176779_c0_g1_i1.p1, TRINITY_DN3994_c0_g1_i7.p1
Chironomus riparius CRIPA g7046.t1
Chironomus columbiensis CCOLU TRINITY_DN67906_c0_g1_i1.p1, TRINITY_DN21772_c0_g1_i1.p1
Chironomus tentans CTENT g7195.t1
Chironomus dilutus CDILU none
Polypedilum nubifer PNUBI Pn.02221
Polypedilum vanderplanki PVAND g11605.t1
Polypedilum pembai PPEMB g7973.t1
Culicoides sonorensis CSONO CSON009672-1, CSON009550-1
Aedes aegypti lvpagwg AAEGYL AAEL005605-PC
Anopheles gambiae AGAMB AGAP001256-PC

Gene tree

Expression profile for this gene

Gene-level expression profile

Raw TPM values

Expression profile of isoforms

A heatmap representing isoforms with TPM > 0 in at least one sample. Expression profiles were are clustered based on the spearman correlation