Gene loci information

Isoforms of this gene

  • There are 2 isoforms that are expressed from this gene.
  • The longest transcript is g1180.t1
  • List of isoforms

g1180.t1, g1180.t2

The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively.

KEGG

Orthology

Pathway

  • This gene belongs to the following 1 pathways
ko04919

Gene conservation patterns

Diptera wide analysis

The Orthogroup for the longest transcript (g1180.t1) is OG0004170. Other genes in this orthogroup contains the following. This list is ordered by phylogeny determined by OrthoFinder analysis. Genes from ENSEMBL are linked to their corresponding pages. For P. nubifer and P. vanderplanki, they are linked to the Midgebase1 and Midgebase2 pages.

Conservation

Organism Abb. ID No. Orthologs Ortholog ID
Atta cephalotes ACEPH 1 XP_012059169.1
Apis mellifera AMELL 1 GB42452-PA
Culicoides sonorensis CSONO 2 CSON000371-1, CSON008994-1
Polypedilum nubifer PNUBI 1 Pn.12054
Polypedilum vanderplanki PVAND 1 g1180.t1
Polypedilum pembai PPEMB 0 none
Belgica antarctica BANTA 2 IU25_09473-mRNA-1, IU25_09469-mRNA-1
Clunio marinus CMARI 2 CRK92389.1, CRK92383.1
Aedes aegypti lvpagwg AAEGYL 1 AAEL007482-PA
Culex quinquefasciatus quinquefasciatus CQUINQ 1 EDS39119.1
Culex quinquefasciatus CQUIN 1 CPIJ013675-PA
Anopheles atroparvus AATRO 1 AATE004377-PA
Anopheles sinensis china ASINEC 1 ASIC013972-PA
Anopheles dirus ADIRU 1 ADIR010185-PA
Anopheles farauti AFARA 1 AFAF006171-PA
Anopheles epiroticus AEPIR 1 AEPI001594-PA
Anopheles christyi ACHRI 1 ACHR006536-PA
Anopheles merus AMERU 1 AMEM006259-PA
Anopheles melas AMELA 1 AMEC003377-PA
Anopheles arabiensis AARAB 1 AARA004178-PA
Anopheles coluzzii ACOLU 1 ACOM036544-PA
Anopheles coluzzii ngousso ACOLUN 1 ACON002664-PA
Anopheles gambiae AGAMB 1 AGAP002664-PA
Anopheles quadriannulatus AQUAD 1 AQUA006822-PA
Anopheles minimus AMINI 1 AMIN003639-PA
Anopheles culicifacies ACULI 1 ACUA021344-PA
Anopheles funestus AFUNE 1 AFUN008557-PA
Anopheles stephensi indian ASTEPI 1 ASTEI04146-PA
Anopheles stephensi ASTEP 1 ASTE005201-PA
Anopheles albimanus AALBI 0 none
Anopheles darlingi ADARL 1 ADAC000726-PA
Drosophila willistoni DWILL 1 FBpp0251547
Drosophila pseudoobscura DPSEU 1 FBpp0282232
Drosophila persimilis DPERS 1 FBpp0188497
Drosophila ananassae DANAN 1 FBpp0120770
Drosophila melanogaster DMELA 1 FBpp0078361
Drosophila sechellia DSECH 1 FBpp0192306
Drosophila simulans DSIMU 1 FBpp0218209
Drosophila erecta DEREC 1 FBpp0131526
Drosophila yakuba DYAKU 1 FBpp0255162
Drosophila virilis DVIRI 1 FBpp0224779
Drosophila mojavensis DMOJA 1 FBpp0172584
Drosophila grimshawi DGRIM 1 FBpp0422141
Lucilia cuprina LCUPR 1 KNC24863
Musca domestica MDOME 1 MDOA014476-PA
Stomoxys calcitrans SCALC 2 SCAU011467-PA, SCAU002979-PA
Glossina brevipalpis GBREV 1 GBRI006816-PA
Glossina palpalis GPALP 1 GPPI011215-PA
Glossina austeni GAUST 1 GAUT026114-PA
Glossina pallidipes GPALL 1 GPAI006162-PA
Glossina morsitans GMORS 1 GMOY002454-PA

Gene tree

Chironomidae-wide analysis

The Orthogroup for the longest transcript (g1180.t1) is OG0007507. Other genes in this orthogroup contains the following. [This data uses ab initio gene models predicted in Yoshida et al 2022, so most genes are not registered in public databases. Please contact the authors for more information on these data.]

Conservation

Organism Abb. ID Ortholog ID
Podonomus sp PODON TRINITY_DN5772_c0_g1_i1.p1
Parochlus steinenii PSTEI PSG12933
Trissopelopia nemorum TNEMO TRINITY_DN6615_c0_g1_i4.p1
Paraheptagyia tonnoiri PTONN TRINITY_DN7176_c0_g1_i3.p1
Telmatogeton pecinata TPECI TRINITY_DN44910_c0_g1_i1.p1
Cricotopus draysoni CDRAY TRINITY_DN7349_c0_g1_i1.p1
Clunio marinus CMARI CRK92389.1, CRK92383.1
Cardiocladius sp CARDI none
Belgica antarctica BANTA IU25_09473-mRNA-1, IU25_09469-mRNA-1
Kiefferophyes invenustulus KINVE TRINITY_DN24409_c2_g1_i1.p1, TRINITY_DN70618_c0_g1_i1.p1, TRINITY_DN170704_c0_g1_i1.p1
Chironomus riparius CRIPA g8303.t1
Chironomus columbiensis CCOLU none
Chironomus tentans CTENT g937.t1
Chironomus dilutus CDILU TRINITY_DN522_c2_g1_i3.p1
Polypedilum nubifer PNUBI Pn.12054
Polypedilum vanderplanki PVAND g1180.t1
Polypedilum pembai PPEMB none
Culicoides sonorensis CSONO CSON000371-1, CSON008994-1
Aedes aegypti lvpagwg AAEGYL AAEL007482-PA
Anopheles gambiae AGAMB AGAP002664-PA

Gene tree

Expression profile for this gene

Gene-level expression profile

Raw TPM values

Expression profile of isoforms

A heatmap representing isoforms with TPM > 0 in at least one sample. Expression profiles were are clustered based on the spearman correlation