Gene loci information

Isoforms of this gene

  • There are 2 isoforms that are expressed from this gene.
  • The longest transcript is g12957.t1
  • List of isoforms

g12957.t1, g12957.t2

The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively.

KEGG

Orthology

Pathway

  • This gene belongs to the following 1 pathways
ko00730
ko00790
ko01100
ko01240
ko02020

This gene has too many mapped pathways (>3). Please look at the original KEGG entry above for pathway visualization.

Gene conservation patterns

Diptera wide analysis

The Orthogroup for the longest transcript (g12957.t1) is OG0000047. Other genes in this orthogroup contains the following. This list is ordered by phylogeny determined by OrthoFinder analysis. Genes from ENSEMBL are linked to their corresponding pages. For P. nubifer and P. vanderplanki, they are linked to the Midgebase1 and Midgebase2 pages.

Conservation

Organism Abb. ID No. Orthologs Ortholog ID
Atta cephalotes ACEPH 0 none
Apis mellifera AMELL 1 GB52768-PA
Culicoides sonorensis CSONO 6 CSON008288-1, CSON014336-1, CSON012518-1, CSON013223-1, CSON011168-1, CSON000716-1
Polypedilum nubifer PNUBI 10 Pn.08862, Pn.02025, Pn.09387, Pn.00740, Pn.04871, Pn.09386, Pn.09390, Pn.09388, Pn.00739, Pn.09389
Polypedilum vanderplanki PVAND 11 g14967.t1, g12963.t1, g12957.t1, g11008.t1, g12962.t1, g15704.t1, g12958.t1, g12960.t1, g12961.t1, g16007.t1, g12959.t1
Polypedilum pembai PPEMB 5 g11248.t1, g4404.t1, g4403.t1, g12320.t1, g11780.t1
Belgica antarctica BANTA 7 IU25_11658-mRNA-1, IU25_00999-mRNA-1, IU25_04309-mRNA-1, IU25_01676-mRNA-1, IU25_13489-mRNA-1, IU25_04310-mRNA-1, IU25_04308-mRNA-1
Clunio marinus CMARI 7 CRK98187.1, CRK92138.1, CRL01810.1, CRK92143.1, CRK91906.1, CRK87690.1, CRK89152.1
Aedes aegypti lvpagwg AAEGYL 9 AAEL003317-PB, AAEL029070-PA, AAEL003289-PB, AAEL003298-PA, AAEL029071-PA, AAEL009077-PB, AAEL003297-PA, AAEL003905-PA, AAEL013330-PA
Culex quinquefasciatus quinquefasciatus CQUINQ 7 EDS32226.1, EDS29323.1, EDS29464.1, EDS29321.1, EDS29320.1, EDS26479.1, EDS29322.1
Culex quinquefasciatus CQUIN 7 CPIJ018121-PA, CPIJ007291-PA, CPIJ002095-PA, CPIJ001264-PA, CPIJ001262-PA, CPIJ001265-PA, CPIJ001263-PA
Anopheles atroparvus AATRO 7 AATE020123-PA, AATE006069-PA, AATE015599-PA, AATE004253-PA, AATE017129-PA, AATE011241-PA, AATE008538-PA
Anopheles sinensis china ASINEC 6 ASIC007908-PA, ASIC009777-PA, ASIC007910-PA, ASIC007786-PA, ASIC009123-PA, ASIC007909-PA
Anopheles dirus ADIRU 6 ADIR016116-PA, ADIR004399-PA, ADIR008207-PA, ADIR010414-PA, ADIR002169-PA, ADIR016115-PA
Anopheles farauti AFARA 7 AFAF012824-PA, AFAF011992-PA, AFAF004110-PA, AFAF014911-PA, AFAF012589-PA, AFAF012520-PA, AFAF008960-PA
Anopheles epiroticus AEPIR 5 AEPI000941-PA, AEPI008192-PA, AEPI000510-PA, AEPI009958-PA, AEPI000511-PA
Anopheles christyi ACHRI 4 ACHR000241-PA, ACHR002241-PA, ACHR004384-PA, ACHR004383-PA
Anopheles merus AMERU 7 AMEM011592-PA, AMEM019603-PA, AMEM015472-PA, AMEM019605-PA, AMEM011999-PA, AMEM019602-PA, AMEM019604-PA
Anopheles melas AMELA 7 AMEC013973-PA, AMEC012076-PA, AMEC011030-PA, AMEC002399-PA, AMEC009603-PA, AMEC012305-PA, AMEC006018-PA
Anopheles arabiensis AARAB 7 AARA018349-PA, AARA018348-PA, AARA018347-PA, AARA007919-PA, AARA002132-PA, AARA018350-PA, AARA006488-PA
Anopheles coluzzii ACOLU 4 ACOM038031-PA, ACOM025508-PA, ACOM034519-PA, ACOM029535-PA
Anopheles coluzzii ngousso ACOLUN 7 ACON011303-PA, ACON001684-PA, ACON011305-PA, ACON028096-PA, ACON011302-PA, ACON004578-PA, ACON007300-PA
Anopheles gambiae AGAMB 8 AGAP004578-PA, AGAP001684-PA, AGAP007300-PA, AGAP011302-PA, AGAP012634-PA, AGAP028096-PA, AGAP011305-PA, AGAP011303-PA
Anopheles quadriannulatus AQUAD 5 AQUA004036-PA, AQUA002709-PA, AQUA000551-PA, AQUA002710-PA, AQUA002798-PA
Anopheles minimus AMINI 5 AMIN004943-PA, AMIN010564-PA, AMIN009186-PA, AMIN003492-PA, AMIN009185-PA
Anopheles culicifacies ACULI 8 ACUA004281-PA, ACUA027122-PA, ACUA002696-PA, ACUA013380-PA, ACUA025700-PA, ACUA018467-PA, ACUA024582-PA, ACUA023212-PA
Anopheles funestus AFUNE 6 AFUN009750-PA, AFUN021746-PA, AFUN004394-PA, AFUN002611-PA, AFUN007143-PA, AFUN021745-PA
Anopheles stephensi indian ASTEPI 5 ASTEI03083-PA, ASTEI04208-PA, ASTEI01275-PA, ASTEI04209-PA, ASTEI04789-PA
Anopheles stephensi ASTEP 2 ASTE003832-PA, ASTE006855-PA
Anopheles albimanus AALBI 5 AALB009701-PA, AALB007407-PA, AALB005494-PA, AALB008075-PA, AALB007408-PA
Anopheles darlingi ADARL 6 ADAC001892-PA, ADAC001684-PA, ADAC006259-PA, ADAC002767-PA, ADAC001891-PA, ADAC002429-PA
Drosophila willistoni DWILL 8 FBpp0249980, FBpp0246022, FBpp0240282, FBpp0246443, FBpp0240106, FBpp0249979, FBpp0246139, FBpp0250965
Drosophila pseudoobscura DPSEU 9 FBpp0275273, FBpp0274301, FBpp0278524, FBpp0340885, FBpp0283857, FBpp0282864, FBpp0278472, FBpp0332354, FBpp0278473
Drosophila persimilis DPERS 8 FBpp0176114, FBpp0177717, FBpp0181277, FBpp0181045, FBpp0176405, FBpp0181046, FBpp0187355, FBpp0186655
Drosophila ananassae DANAN 8 FBpp0115667, FBpp0126752, FBpp0120197, FBpp0120408, FBpp0113647, FBpp0115518, FBpp0127176, FBpp0115516
Drosophila melanogaster DMELA 9 FBpp0076794, FBpp0087603, FBpp0071694, FBpp0071696, FBpp0071695, FBpp0083450, FBpp0304205, FBpp0076835, FBpp0081538
Drosophila sechellia DSECH 9 FBpp0197132, FBpp0203617, FBpp0196595, FBpp0205285, FBpp0202610, FBpp0195386, FBpp0197130, FBpp0197131, FBpp0196187
Drosophila simulans DSIMU 9 FBpp0223541, FBpp0223540, FBpp0324030, FBpp0326109, FBpp0321319, FBpp0217019, FBpp0223539, FBpp0209065, FBpp0211588
Drosophila erecta DEREC 9 FBpp0133572, FBpp0132669, FBpp0142631, FBpp0135355, FBpp0131781, FBpp0133822, FBpp0139256, FBpp0139257, FBpp0139255
Drosophila yakuba DYAKU 10 FBpp0266508, FBpp0270963, FBpp0256704, FBpp0256703, FBpp0267343, FBpp0270037, FBpp0256702, FBpp0267984, FBpp0264296, FBpp0265557
Drosophila virilis DVIRI 8 FBpp0234422, FBpp0229510, FBpp0227540, FBpp0224879, FBpp0226372, FBpp0229475, FBpp0227827, FBpp0238060
Drosophila mojavensis DMOJA 8 FBpp0168255, FBpp0162396, FBpp0161352, FBpp0384868, FBpp0169105, FBpp0173229, FBpp0169143, FBpp0171226
Drosophila grimshawi DGRIM 8 FBpp0153837, FBpp0149103, FBpp0150149, FBpp0149282, FBpp0413096, FBpp0155356, FBpp0152342, FBpp0153147
Lucilia cuprina LCUPR 12 KNC22161, KNC21920, KNC21921, KNC27894, KNC27332, KNC21977, KNC25843, KNC28776, KNC22141, KNC25855, KNC28224, KNC21976
Musca domestica MDOME 17 MDOA001048-PA, MDOA011095-PB, MDOA008493-PA, MDOA012666-PA, MDOA010193-PA, MDOA010100-PA, MDOA011446-PA, MDOA007510-PA, MDOA002927-PA, MDOA010982-PA, MDOA001188-PA, MDOA000824-PA, MDOA008316-PA, MDOA007706-PA, MDOA006943-PA, MDOA002967-PA, MDOA011512-PB
Stomoxys calcitrans SCALC 18 SCAU015399-PA, SCAU008600-PA, SCAU013076-PA, SCAU005808-PA, SCAU003967-PA, SCAU008052-PA, SCAU015942-PA, SCAU011074-PA, SCAU009310-PA, SCAU003511-PA, SCAU003966-PA, SCAU005143-PA, SCAU006846-PA, SCAU007761-PA, SCAU009943-PA, SCAU011511-PA, SCAU007086-PA, SCAU013050-PA
Glossina brevipalpis GBREV 4 GBRI018117-PA, GBRI009687-PA, GBRI011689-PA, GBRI035728-PA
Glossina palpalis GPALP 4 GPPI028935-PA, GPPI034161-PA, GPPI049601-PA, GPPI038232-PA
Glossina austeni GAUST 4 GAUT044755-PA, GAUT022597-PA, GAUT003065-PA, GAUT034321-PA
Glossina pallidipes GPALL 4 GPAI019813-PA, GPAI037355-PA, GPAI017306-PA, GPAI029020-PA
Glossina morsitans GMORS 3 GMOY009926-PA, GMOY006875-PA, GMOY004796-PA

Gene tree

Chironomidae-wide analysis

The Orthogroup for the longest transcript (g12957.t1) is OG0000156. Other genes in this orthogroup contains the following. [This data uses ab initio gene models predicted in Yoshida et al 2022, so most genes are not registered in public databases. Please contact the authors for more information on these data.]

Conservation

Organism Abb. ID Ortholog ID
Podonomus sp PODON TRINITY_DN32818_c0_g1_i2.p1
Parochlus steinenii PSTEI PSG12575, PSG05242, PSG12765, PSG13169
Trissopelopia nemorum TNEMO TRINITY_DN3043_c0_g1_i7.p1, TRINITY_DN3748_c0_g1_i5.p1, TRINITY_DN4206_c0_g1_i9.p1, TRINITY_DN1405_c0_g1_i2.p1, TRINITY_DN494_c0_g1_i1.p1
Paraheptagyia tonnoiri PTONN TRINITY_DN1997_c0_g2_i1.p1, TRINITY_DN2540_c0_g1_i2.p1, TRINITY_DN801_c0_g1_i6.p1, TRINITY_DN4654_c0_g1_i3.p1, TRINITY_DN2540_c0_g2_i1.p1
Telmatogeton pecinata TPECI TRINITY_DN622_c0_g1_i7.p1
Cricotopus draysoni CDRAY TRINITY_DN24724_c0_g1_i1.p1, TRINITY_DN14023_c0_g1_i4.p1, TRINITY_DN3378_c0_g1_i1.p1, TRINITY_DN20346_c0_g1_i1.p1, TRINITY_DN5947_c0_g1_i1.p1, TRINITY_DN5294_c1_g1_i1.p1, TRINITY_DN17468_c0_g1_i1.p1, TRINITY_DN32626_c0_g1_i1.p1
Clunio marinus CMARI CRK98187.1, CRK92138.1, CRL01810.1, CRK92143.1, CRK91906.1, CRK87690.1, CRK89152.1
Cardiocladius sp CARDI TRINITY_DN1269_c0_g1_i2.p1
Belgica antarctica BANTA IU25_11658-mRNA-1, IU25_00999-mRNA-1, IU25_04309-mRNA-1, IU25_01676-mRNA-1, IU25_04310-mRNA-1
Kiefferophyes invenustulus KINVE TRINITY_DN9354_c0_g1_i2.p1, TRINITY_DN3119_c0_g1_i4.p1, TRINITY_DN30735_c1_g1_i2.p1, TRINITY_DN9652_c0_g1_i1.p1, TRINITY_DN27090_c0_g1_i4.p1, TRINITY_DN9222_c0_g1_i4.p1, TRINITY_DN5228_c0_g6_i1.p1, TRINITY_DN83937_c0_g1_i5.p1, TRINITY_DN3007_c0_g1_i3.p1
Chironomus riparius CRIPA g15368.t1, g9214.t1, g4250.t1, g1998.t1, g15367.t1, g9215.t1, g4103.t1, g9213.t1, g13242.t1
Chironomus columbiensis CCOLU TRINITY_DN3183_c0_g1_i2.p1, TRINITY_DN1371_c0_g1_i7.p1, TRINITY_DN1201_c0_g2_i1.p1, TRINITY_DN16383_c0_g1_i1.p1, TRINITY_DN764_c0_g1_i1.p1, TRINITY_DN13283_c0_g1_i2.p1, TRINITY_DN16403_c0_g2_i2.p1, TRINITY_DN6069_c0_g1_i9.p1, TRINITY_DN919_c0_g1_i1.p1, TRINITY_DN4233_c0_g1_i13.p1
Chironomus tentans CTENT g5896.t1, g4576.t1, g16225.t1, g14875.t1, g4036.t1, g3686.t1
Chironomus dilutus CDILU TRINITY_DN5555_c0_g1_i2.p1, TRINITY_DN196_c0_g1_i9.p1, TRINITY_DN1640_c8_g1_i1.p1, TRINITY_DN3134_c0_g2_i2.p1, TRINITY_DN342_c0_g1_i4.p1, TRINITY_DN5336_c0_g1_i1.p1, TRINITY_DN19756_c0_g1_i1.p1
Polypedilum nubifer PNUBI Pn.08862, Pn.02025, Pn.09387, Pn.04871, Pn.09386, Pn.09390, Pn.09388, Pn.00739, Pn.09389
Polypedilum vanderplanki PVAND g14967.t1, g12963.t1, g12957.t1, g11008.t1, g12962.t1, g15704.t1, g12958.t1, g12960.t1, g16007.t1, g12959.t1
Polypedilum pembai PPEMB g11248.t1, g4404.t1, g4403.t1, g12320.t1, g11780.t1
Culicoides sonorensis CSONO CSON008288-1, CSON014336-1, CSON012518-1, CSON013223-1, CSON011168-1, CSON000716-1
Aedes aegypti lvpagwg AAEGYL AAEL003317-PB, AAEL029070-PA, AAEL003289-PB, AAEL003298-PA, AAEL029071-PA, AAEL009077-PB, AAEL003297-PA, AAEL003905-PA, AAEL013330-PA
Anopheles gambiae AGAMB AGAP004578-PA, AGAP001684-PA, AGAP007300-PA, AGAP011302-PA, AGAP012634-PA, AGAP028096-PA, AGAP011305-PA, AGAP011303-PA

Gene tree

Expression profile for this gene

Gene-level expression profile

Raw TPM values

Expression profile of isoforms

A heatmap representing isoforms with TPM > 0 in at least one sample. Expression profiles were are clustered based on the spearman correlation