Gene loci information

Isoforms of this gene

  • There are 10 isoforms that are expressed from this gene.
  • The longest transcript is g16912.t2
  • List of isoforms

g16912.t1, g16912.t2, g16912.t4, g16912.t5, g16912.t6, g16912.t7, g16912.t8, g16912.t9, g16912.t10, g16912.t11

The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively.

KEGG

Orthology

This gene did not have any KEGG Ortholog annotations (KAAS, GHOSTZ).

Gene conservation patterns

Diptera wide analysis

The Orthogroup for the longest transcript (g16912.t2) is OG0000602. Other genes in this orthogroup contains the following. This list is ordered by phylogeny determined by OrthoFinder analysis. Genes from ENSEMBL are linked to their corresponding pages. For P. nubifer and P. vanderplanki, they are linked to the Midgebase1 and Midgebase2 pages.

Conservation

Organism Abb. ID No. Orthologs Ortholog ID
Atta cephalotes ACEPH 1 XP_012060402.1
Apis mellifera AMELL 1 GB44966-PA
Culicoides sonorensis CSONO 1 CSON012635-1
Polypedilum nubifer PNUBI 2 Pn.13095, Pn.06236
Polypedilum vanderplanki PVAND 2 g16912.t2, g12886.t1
Polypedilum pembai PPEMB 2 g8545.t1, g7888.t1
Belgica antarctica BANTA 2 IU25_06377-mRNA-1, IU25_02557-mRNA-1
Clunio marinus CMARI 2 CRK88163.1, CRL02862.1
Aedes aegypti lvpagwg AAEGYL 3 AAEL027637-PA, AAEL026716-PA, AAEL008849-PA
Culex quinquefasciatus quinquefasciatus CQUINQ 2 EDS30323.1, EDS26338.1
Culex quinquefasciatus CQUIN 2 CPIJ018004-PA, CPIJ001564-PA
Anopheles atroparvus AATRO 2 AATE007328-PA, AATE006967-PA
Anopheles sinensis china ASINEC 2 ASIC020075-PA, ASIC017618-PA
Anopheles dirus ADIRU 3 ADIR002099-PA, ADIR010988-PA, ADIR003919-PA
Anopheles farauti AFARA 2 AFAF008224-PA, AFAF008635-PA
Anopheles epiroticus AEPIR 2 AEPI010336-PA, AEPI004807-PA
Anopheles christyi ACHRI 2 ACHR009418-PA, ACHR002916-PA
Anopheles merus AMERU 2 AMEM002768-PA, AMEM016176-PA
Anopheles melas AMELA 2 AMEC011655-PA, AMEC008459-PA
Anopheles arabiensis AARAB 2 AARA005159-PA, AARA006191-PA
Anopheles coluzzii ACOLU 2 ACOM041859-PA, ACOM030743-PA
Anopheles coluzzii ngousso ACOLUN 2 ACON011375-PA, ACON007967-PA
Anopheles gambiae AGAMB 2 AGAP007967-PA, AGAP011375-PA
Anopheles quadriannulatus AQUAD 2 AQUA000701-PA, AQUA002197-PA
Anopheles minimus AMINI 2 AMIN004269-PA, AMIN006302-PA
Anopheles culicifacies ACULI 2 ACUA007811-PA, ACUA012326-PA
Anopheles funestus AFUNE 2 AFUN006326-PA, AFUN010256-PA
Anopheles stephensi indian ASTEPI 2 ASTEI01731-PA, ASTEI09511-PA
Anopheles stephensi ASTEP 2 ASTE006352-PA, ASTE003825-PA
Anopheles albimanus AALBI 2 AALB000836-PA, AALB003942-PA
Anopheles darlingi ADARL 2 ADAC005649-PA, ADAC002390-PA
Drosophila willistoni DWILL 1 FBpp0250002
Drosophila pseudoobscura DPSEU 2 FBpp0300356, FBpp0275877
Drosophila persimilis DPERS 2 FBpp0187485, FBpp0174308
Drosophila ananassae DANAN 2 FBpp0349014, FBpp0114550
Drosophila melanogaster DMELA 2 FBpp0079588, FBpp0086690
Drosophila sechellia DSECH 2 FBpp0201695, FBpp0199679
Drosophila simulans DSIMU 2 FBpp0224091, FBpp0222083
Drosophila erecta DEREC 2 FBpp0140977, FBpp0368240
Drosophila yakuba DYAKU 2 FBpp0355064, FBpp0257331
Drosophila virilis DVIRI 2 FBpp0393198, FBpp0234375
Drosophila mojavensis DMOJA 2 FBpp0168211, FBpp0167388
Drosophila grimshawi DGRIM 2 FBpp0154002, FBpp0407941
Lucilia cuprina LCUPR 3 KNC29663, KNC26250, KNC26249
Musca domestica MDOME 2 MDOA003865-PA, MDOA004937-PA
Stomoxys calcitrans SCALC 2 SCAU002594-PA, SCAU011598-PA
Glossina brevipalpis GBREV 2 GBRI021683-PA, GBRI020805-PA
Glossina palpalis GPALP 4 GPPI009763-PA, GPPI001597-PA, GPPI001526-PA, GPPI009764-PA
Glossina austeni GAUST 2 GAUT028528-PA, GAUT014637-PA
Glossina pallidipes GPALL 2 GPAI020829-PA, GPAI018824-PA
Glossina morsitans GMORS 2 GMOY005946-PA, GMOY010854-PA

Gene tree

Chironomidae-wide analysis

The Orthogroup for the longest transcript (g16912.t2) is OG0007205. Other genes in this orthogroup contains the following. [This data uses ab initio gene models predicted in Yoshida et al 2022, so most genes are not registered in public databases. Please contact the authors for more information on these data.]

Conservation

Organism Abb. ID Ortholog ID
Podonomus sp PODON TRINITY_DN4924_c0_g1_i1.p1
Parochlus steinenii PSTEI PSG01023, PSG11599
Trissopelopia nemorum TNEMO TRINITY_DN992_c0_g1_i4.p1
Paraheptagyia tonnoiri PTONN TRINITY_DN1472_c0_g1_i1.p1
Telmatogeton pecinata TPECI none
Cricotopus draysoni CDRAY TRINITY_DN672_c0_g1_i1.p1, TRINITY_DN100909_c0_g1_i1.p1
Clunio marinus CMARI CRL02862.1
Cardiocladius sp CARDI TRINITY_DN13631_c0_g1_i3.p1
Belgica antarctica BANTA IU25_02557-mRNA-1
Kiefferophyes invenustulus KINVE TRINITY_DN5065_c3_g1_i1.p1, TRINITY_DN67986_c0_g1_i1.p1, TRINITY_DN97_c0_g1_i9.p1, TRINITY_DN189210_c0_g1_i1.p3
Chironomus riparius CRIPA g5859.t1
Chironomus columbiensis CCOLU none
Chironomus tentans CTENT g6411.t1
Chironomus dilutus CDILU TRINITY_DN7200_c0_g1_i1.p1
Polypedilum nubifer PNUBI Pn.13095
Polypedilum vanderplanki PVAND g16912.t2
Polypedilum pembai PPEMB g7888.t1
Culicoides sonorensis CSONO none
Aedes aegypti lvpagwg AAEGYL AAEL027637-PA, AAEL026716-PA
Anopheles gambiae AGAMB AGAP011375-PA

Gene tree

Expression profile for this gene

Gene-level expression profile

Raw TPM values

Expression profile of isoforms

A heatmap representing isoforms with TPM > 0 in at least one sample. Expression profiles were are clustered based on the spearman correlation