Gene loci information

Isoforms of this gene

  • There are 2 isoforms that are expressed from this gene.
  • The longest transcript is g519.t1
  • List of isoforms

g519.t1, g519.t2

The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively.

KEGG

Pathway

  • This gene belongs to the following 1 pathways
ko00140

Gene conservation patterns

Diptera wide analysis

The Orthogroup for the longest transcript (g519.t1) is OG0000028. Other genes in this orthogroup contains the following. This list is ordered by phylogeny determined by OrthoFinder analysis. Genes from ENSEMBL are linked to their corresponding pages. For P. nubifer and P. vanderplanki, they are linked to the Midgebase1 and Midgebase2 pages.

Conservation

Organism Abb. ID No. Orthologs Ortholog ID
Atta cephalotes ACEPH 3 XP_012056231.1, XP_012056348.1, XP_012054747.1
Apis mellifera AMELL 5 GB53986-PA, GB40769-PA, GB54417-PA, GB54419-PA, GB40770-PA
Culicoides sonorensis CSONO 6 CSON011823-1, CSON011368-1, CSON007132-1, CSON003450-1, CSON008640-1, CSON005880-1
Polypedilum nubifer PNUBI 20 Pn.06603, Pn.01949, Pn.06605, Pn.10704, Pn.16421, Pn.06730, Pn.01946, Pn.02544, Pn.06289, Pn.10780, Pn.11142, Pn.11082, Pn.01948, Pn.11143, Pn.06731, Pn.06604, Pn.14474, Pn.01947, Pn.11804, Pn.01335
Polypedilum vanderplanki PVAND 20 g16406.t1, g8020.t1, g2253.t1, g16453.t1, g519.t1, g5156.t1, g515.t1, g8019.t1, g627.t1, g12776.t1, g14171.t1, g2521.t1, g514.t1, g516.t1, g1462.t1, g520.t1, g521.t1, g522.t1, g517.t1, g518.t1
Polypedilum pembai PPEMB 12 g3593.t1, g14515.t1, g7648.t1, g4530.t1, g3592.t1, g13333.t1, g13760.t1, g14514.t1, g2282.t1, g8602.t1, g7649.t1, g14626.t1
Belgica antarctica BANTA 6 IU25_10347-mRNA-1, IU25_12172-mRNA-1, IU25_10348-mRNA-1, IU25_05504-mRNA-1, IU25_05503-mRNA-1, IU25_09176-mRNA-1
Clunio marinus CMARI 11 CRK92004.1, CRL04621.1, CRL02303.1, CRL02304.1, CRK92161.1, CRK92006.1, CRL06496.1, CRK89108.1, CRK89701.1, CRL02305.1, CRK93346.1
Aedes aegypti lvpagwg AAEGYL 12 AAEL010075-PA, AAEL029052-PA, AAEL017302-PA, AAEL009685-PA, AAEL001461-PA, AAEL010677-PA, AAEL010671-PA, AAEL007669-PA, AAEL017179-PA, AAEL017320-PA, AAEL027593-PA, AAEL017452-PA
Culex quinquefasciatus quinquefasciatus CQUINQ 18 EDS36404.1, EDS36399.1, EDS44406.1, EDS43377.1, EDS33998.1, EDS43376.1, EDS43378.1, EDS43373.1, EDS43374.1, EDS45834.1, EDS44402.1, EDS44404.1, EDS43375.1, EDS45833.1, EDS44403.1, EDS44405.1, EDS30320.1, EDS45832.1
Culex quinquefasciatus CQUIN 18 CPIJ004602-PA, CPIJ016920-PA, CPIJ020041-PA, CPIJ005655-PA, CPIJ004603-PA, CPIJ020331-PA, CPIJ005656-PA, CPIJ004598-PA, CPIJ004600-PA, CPIJ004601-PA, CPIJ016922-PA, CPIJ002522-PA, CPIJ005654-PA, CPIJ004599-PA, CPIJ016921-PA, CPIJ001561-PA, CPIJ002517-PA, CPIJ016923-PA
Anopheles atroparvus AATRO 4 AATE011389-PA, AATE020986-PA, AATE006336-PA, AATE013356-PA
Anopheles sinensis china ASINEC 7 ASIC018930-PA, ASIC012461-PA, ASIC018932-PA, ASIC018931-PA, ASIC012464-PA, ASIC012465-PA, ASIC012462-PA
Anopheles dirus ADIRU 6 ADIR006886-PA, ADIR008681-PA, ADIR014733-PA, ADIR014730-PA, ADIR008680-PA, ADIR009458-PA
Anopheles farauti AFARA 8 AFAF004293-PA, AFAF011637-PA, AFAF010029-PA, AFAF004870-PA, AFAF001948-PA, AFAF019755-PA, AFAF018050-PA, AFAF014664-PA
Anopheles epiroticus AEPIR 5 AEPI008393-PA, AEPI006432-PA, AEPI008395-PA, AEPI008394-PA, AEPI008627-PA
Anopheles christyi ACHRI 4 ACHR009424-PA, ACHR007998-PA, ACHR007997-PA, ACHR004828-PA
Anopheles merus AMERU 6 AMEM012267-PA, AMEM015052-PA, AMEM011154-PA, AMEM006360-PA, AMEM018207-PA, AMEM001771-PA
Anopheles melas AMELA 6 AMEC002073-PA, AMEC015063-PA, AMEC006919-PA, AMEC017705-PA, AMEC014066-PA, AMEC006458-PA
Anopheles arabiensis AARAB 7 AARA017775-PA, AARA017773-PA, AARA002310-PA, AARA017776-PA, AARA014938-PA, AARA005755-PA, AARA017774-PA
Anopheles coluzzii ACOLU 5 ACOM039089-PA, ACOM039081-PA, ACOM039078-PA, ACOM039080-PA, ACOM038874-PA
Anopheles coluzzii ngousso ACOLUN 7 ACON005499-PA, ACON010311-PA, ACON005503-PA, ACON005500-PA, ACON005501-PA, ACON005645-PA, ACON005502-PA
Anopheles gambiae AGAMB 7 AGAP010311-PA, AGAP005502-PA, AGAP005500-PA, AGAP005645-PA, AGAP005501-PA, AGAP005499-PA, AGAP005503-PA
Anopheles quadriannulatus AQUAD 4 AQUA011218-PA, AQUA009700-PA, AQUA009701-PA, AQUA015000-PA
Anopheles minimus AMINI 7 AMIN015544-PA, AMIN015543-PA, AMIN015542-PA, AMIN010186-PA, AMIN015541-PA, AMIN010826-PA, AMIN006452-PA
Anopheles culicifacies ACULI 5 ACUA017234-PA, ACUA001182-PA, ACUA026504-PA, ACUA024148-PA, ACUA022356-PA
Anopheles funestus AFUNE 7 AFUN021810-PA, AFUN021809-PA, AFUN009147-PA, AFUN021807-PA, AFUN004873-PA, AFUN021811-PA, AFUN021808-PA
Anopheles stephensi indian ASTEPI 4 ASTEI02107-PA, ASTEI02238-PA, ASTEI06665-PA, ASTEI02109-PA
Anopheles stephensi ASTEP 5 ASTE009555-PA, ASTE007231-PA, ASTE010293-PA, ASTE010291-PA, ASTE009556-PA
Anopheles albimanus AALBI 4 AALB005103-PA, AALB007542-PA, AALB005102-PA, AALB004120-PA
Anopheles darlingi ADARL 7 ADAC005590-PA, ADAC006496-PA, ADAC005591-PA, ADAC002309-PA, ADAC002314-PA, ADAC002313-PA, ADAC005589-PA
Drosophila willistoni DWILL 12 FBpp0248987, FBpp0241912, FBpp0244169, FBpp0243366, FBpp0243367, FBpp0375216, FBpp0244533, FBpp0245664, FBpp0379605, FBpp0377492, FBpp0245970, FBpp0243368
Drosophila pseudoobscura DPSEU 10 FBpp0287303, FBpp0280381, FBpp0281895, FBpp0282607, FBpp0273638, FBpp0273289, FBpp0273639, FBpp0281897, FBpp0272849, FBpp0279210
Drosophila persimilis DPERS 11 FBpp0188143, FBpp0180646, FBpp0188144, FBpp0183185, FBpp0177135, FBpp0191268, FBpp0188145, FBpp0180644, FBpp0184410, FBpp0191218, FBpp0179335
Drosophila ananassae DANAN 10 FBpp0120452, FBpp0118597, FBpp0123445, FBpp0125553, FBpp0114152, FBpp0119557, FBpp0125349, FBpp0125348, FBpp0119556, FBpp0122311
Drosophila melanogaster DMELA 8 FBpp0291423, FBpp0083499, FBpp0297622, FBpp0071206, FBpp0073450, FBpp0110508, FBpp0110515, FBpp0073324
Drosophila sechellia DSECH 10 FBpp0195168, FBpp0191532, FBpp0199439, FBpp0192733, FBpp0205362, FBpp0191533, FBpp0206056, FBpp0192327, FBpp0194524, FBpp0196563
Drosophila simulans DSIMU 9 FBpp0221744, FBpp0221002, FBpp0214493, FBpp0214401, FBpp0327589, FBpp0215977, FBpp0218234, FBpp0218393, FBpp0214374
Drosophila erecta DEREC 8 FBpp0136052, FBpp0136051, FBpp0132302, FBpp0137419, FBpp0137559, FBpp0128683, FBpp0137380, FBpp0133273
Drosophila yakuba DYAKU 8 FBpp0270010, FBpp0265062, FBpp0262434, FBpp0262323, FBpp0260270, FBpp0260269, FBpp0262609, FBpp0263958
Drosophila virilis DVIRI 9 FBpp0233036, FBpp0233341, FBpp0229592, FBpp0233340, FBpp0238196, FBpp0229248, FBpp0229249, FBpp0228857, FBpp0226535
Drosophila mojavensis DMOJA 8 FBpp0165302, FBpp0164172, FBpp0164476, FBpp0164979, FBpp0164173, FBpp0162694, FBpp0380656, FBpp0160050
Drosophila grimshawi DGRIM 8 FBpp0152800, FBpp0144840, FBpp0406614, FBpp0152811, FBpp0146135, FBpp0146768, FBpp0415510, FBpp0158494
Lucilia cuprina LCUPR 11 KNC20987, KNC20986, KNC30592, KNC25239, KNC20984, KNC22644, KNC20988, KNC22645, KNC24015, KNC23621, KNC23624
Musca domestica MDOME 18 MDOA000920-PA, MDOA006156-PA, MDOA012653-PA, MDOA014449-PA, MDOA003178-PA, MDOA003898-PA, MDOA015353-PA, MDOA008730-PA, MDOA015187-PA, MDOA011561-PA, MDOA014812-PA, MDOA005352-PA, MDOA008578-PA, MDOA005075-PA, MDOA003117-PA, MDOA010323-PA, MDOA007120-PA, MDOA010871-PA
Stomoxys calcitrans SCALC 26 SCAU016082-PA, SCAU014326-PA, SCAU001524-PA, SCAU015335-PA, SCAU007202-PA, SCAU016358-PA, SCAU002731-PA, SCAU002696-PA, SCAU001897-PA, SCAU000003-PA, SCAU013103-PA, SCAU011028-PA, SCAU007526-PA, SCAU011788-PB, SCAU014278-PA, SCAU000087-PA, SCAU011374-PA, SCAU003545-PA, SCAU008867-PA, SCAU001394-PA, SCAU000426-PA, SCAU014716-PA, SCAU001246-PA, SCAU011299-PA, SCAU004874-PA, SCAU001037-PA
Glossina brevipalpis GBREV 4 GBRI027311-PA, GBRI027312-PA, GBRI031864-PA, GBRI027202-PA
Glossina palpalis GPALP 5 GPPI011758-PA, GPPI023300-PA, GPPI011756-PA, GPPI023856-PA, GPPI011859-PA
Glossina austeni GAUST 6 GAUT022703-PA, GAUT028912-PA, GAUT015806-PA, GAUT015804-PA, GAUT001827-PA, GAUT016005-PA
Glossina pallidipes GPALL 6 GPAI046964-PA, GPAI011843-PA, GPAI032901-PA, GPAI001337-PA, GPAI034223-PA, GPAI001339-PA
Glossina morsitans GMORS 8 GMOY006795-PA, GMOY009224-PA, GMOY011599-PA, GMOY000918-PA, GMOY006380-PA, GMOY000287-PA, GMOY005305-PA, GMOY008336-PA

Gene tree

Chironomidae-wide analysis

The Orthogroup for the longest transcript (g519.t1) is OG0001696. Other genes in this orthogroup contains the following. [This data uses ab initio gene models predicted in Yoshida et al 2022, so most genes are not registered in public databases. Please contact the authors for more information on these data.]

Conservation

Organism Abb. ID Ortholog ID
Podonomus sp PODON TRINITY_DN31718_c0_g1_i1.p1
Parochlus steinenii PSTEI PSG12569
Trissopelopia nemorum TNEMO TRINITY_DN2070_c0_g1_i5.p1, TRINITY_DN1754_c0_g1_i7.p1, TRINITY_DN4339_c0_g1_i4.p1, TRINITY_DN1153_c0_g1_i1.p1
Paraheptagyia tonnoiri PTONN none
Telmatogeton pecinata TPECI none
Cricotopus draysoni CDRAY TRINITY_DN37415_c0_g1_i1.p1
Clunio marinus CMARI none
Cardiocladius sp CARDI none
Belgica antarctica BANTA none
Kiefferophyes invenustulus KINVE TRINITY_DN218600_c0_g1_i1.p2
Chironomus riparius CRIPA none
Chironomus columbiensis CCOLU none
Chironomus tentans CTENT none
Chironomus dilutus CDILU none
Polypedilum nubifer PNUBI Pn.06731, Pn.01949, Pn.06730, Pn.01947, Pn.01948, Pn.01946, Pn.01335
Polypedilum vanderplanki PVAND g519.t1, g516.t1, g515.t1, g521.t1, g520.t1, g522.t1, g514.t1
Polypedilum pembai PPEMB g13333.t1, g7648.t1, g7649.t1
Culicoides sonorensis CSONO CSON003450-1
Aedes aegypti lvpagwg AAEGYL AAEL010075-PA, AAEL029052-PA, AAEL017302-PA, AAEL001461-PA, AAEL010677-PA, AAEL010671-PA, AAEL007669-PA, AAEL017179-PA, AAEL017320-PA, AAEL027593-PA, AAEL017452-PA
Anopheles gambiae AGAMB AGAP005502-PA, AGAP005500-PA, AGAP005645-PA, AGAP005501-PA, AGAP005499-PA, AGAP005503-PA

Gene tree

Expression profile for this gene

Gene-level expression profile

Raw TPM values

Expression profile of isoforms

A heatmap representing isoforms with TPM > 0 in at least one sample. Expression profiles were are clustered based on the spearman correlation