Gene loci information

Isoforms of this gene

  • There are 7 isoforms that are expressed from this gene.
  • The longest transcript is g6775.t2
  • List of isoforms

g6775.t1, g6775.t2, g6775.t3, g6775.t4, g6775.t5, g6775.t6, g6775.t7

The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively.

KEGG

Orthology

Pathway

  • This gene belongs to the following 1 pathways
ko00830
ko01100
ko01240

Gene conservation patterns

Diptera wide analysis

The Orthogroup for the longest transcript (g6775.t2) is OG0000174. Other genes in this orthogroup contains the following. This list is ordered by phylogeny determined by OrthoFinder analysis. Genes from ENSEMBL are linked to their corresponding pages. For P. nubifer and P. vanderplanki, they are linked to the Midgebase1 and Midgebase2 pages.

Conservation

Organism Abb. ID No. Orthologs Ortholog ID
Atta cephalotes ACEPH 0 none
Apis mellifera AMELL 2 GB44404-PA, GB47905-PA
Culicoides sonorensis CSONO 2 CSON005967-1, CSON000210-1
Polypedilum nubifer PNUBI 14 Pn.08765, Pn.08760, Pn.02808, Pn.13119, Pn.08766, Pn.08767, Pn.06818, Pn.11583, Pn.06817, Pn.08763, Pn.02809, Pn.00744, Pn.08762, Pn.08768
Polypedilum vanderplanki PVAND 12 g1960.t1, g7125.t1, g6778.t1, g6775.t2, g1959.t1, g6799.t1, g881.t1, g6798.t1, g6774.t1, g6797.t1, g6777.t1, g6779.t1
Polypedilum pembai PPEMB 0 none
Belgica antarctica BANTA 5 IU25_10064-mRNA-1, IU25_02493-mRNA-1, IU25_02491-mRNA-1, IU25_02492-mRNA-1, IU25_02490-mRNA-1
Clunio marinus CMARI 5 CRL08606.1, CRL08604.1, CRK88329.1, CRL06704.1, CRK97375.1
Aedes aegypti lvpagwg AAEGYL 3 AAEL013491-PA, AAEL013483-PA, AAEL002493-PA
Culex quinquefasciatus quinquefasciatus CQUINQ 3 EDS35451.1, EDS35775.1, EDS35774.1
Culex quinquefasciatus CQUIN 3 CPIJ011501-PA, CPIJ011502-PA, CPIJ010835-PA
Anopheles atroparvus AATRO 3 AATE005911-PA, AATE019384-PA, AATE003560-PA
Anopheles sinensis china ASINEC 2 ASIC003691-PA, ASIC011718-PA
Anopheles dirus ADIRU 3 ADIR007012-PA, ADIR007085-PA, ADIR007474-PA
Anopheles farauti AFARA 3 AFAF008558-PA, AFAF016217-PA, AFAF010060-PA
Anopheles epiroticus AEPIR 2 AEPI003724-PA, AEPI002186-PA
Anopheles christyi ACHRI 3 ACHR006073-PA, ACHR015095-PA, ACHR002782-PA
Anopheles merus AMERU 3 AMEM004505-PA, AMEM012448-PA, AMEM013860-PA
Anopheles melas AMELA 3 AMEC002750-PA, AMEC009222-PA, AMEC005483-PA
Anopheles arabiensis AARAB 3 AARA017386-PA, AARA007536-PA, AARA008223-PB
Anopheles coluzzii ACOLU 3 ACOM042516-PA, ACOM025968-PA, ACOM025824-PA
Anopheles coluzzii ngousso ACOLUN 3 ACON005980-PA, ACON007572-PA, ACON007662-PA
Anopheles gambiae AGAMB 3 AGAP007662-PA, AGAP005980-PA, AGAP007572-PA
Anopheles quadriannulatus AQUAD 3 AQUA004356-PA, AQUA005629-PA, AQUA005410-PA
Anopheles minimus AMINI 3 AMIN010303-PA, AMIN010950-PA, AMIN010239-PA
Anopheles culicifacies ACULI 3 ACUA019969-PA, ACUA015103-PA, ACUA014010-PA
Anopheles funestus AFUNE 3 AFUN021044-PA, AFUN004589-PA, AFUN003420-PA
Anopheles stephensi indian ASTEPI 3 ASTEI06331-PA, ASTEI01597-PA, ASTEI01474-PA
Anopheles stephensi ASTEP 3 ASTE001702-PA, ASTE004849-PA, ASTE002324-PA
Anopheles albimanus AALBI 3 AALB006220-PA, AALB005771-PA, AALB005687-PA
Anopheles darlingi ADARL 3 ADAC008546-PA, ADAC004748-PA, ADAC002469-PA
Drosophila willistoni DWILL 8 FBpp0378407, FBpp0378813, FBpp0243872, FBpp0243871, FBpp0247144, FBpp0249028, FBpp0374590, FBpp0374969
Drosophila pseudoobscura DPSEU 4 FBpp0277734, FBpp0276241, FBpp0272726, FBpp0335927
Drosophila persimilis DPERS 4 FBpp0190959, FBpp0184128, FBpp0184127, FBpp0175639
Drosophila ananassae DANAN 8 FBpp0116382, FBpp0116383, FBpp0349287, FBpp0116380, FBpp0124110, FBpp0116385, FBpp0350471, FBpp0346034
Drosophila melanogaster DMELA 6 FBpp0087993, FBpp0087996, FBpp0087995, FBpp0307928, FBpp0070868, FBpp0087997
Drosophila sechellia DSECH 6 FBpp0193960, FBpp0202448, FBpp0202447, FBpp0202445, FBpp0202446, FBpp0202449
Drosophila simulans DSIMU 6 FBpp0321243, FBpp0208902, FBpp0318945, FBpp0323080, FBpp0208901, FBpp0208900
Drosophila erecta DEREC 5 FBpp0141838, FBpp0138133, FBpp0141837, FBpp0141840, FBpp0141839
Drosophila yakuba DYAKU 6 FBpp0264147, FBpp0264150, FBpp0363097, FBpp0363988, FBpp0261758, FBpp0264149
Drosophila virilis DVIRI 4 FBpp0231484, FBpp0396361, FBpp0236524, FBpp0231483
Drosophila mojavensis DMOJA 3 FBpp0381458, FBpp0381663, FBpp0164403
Drosophila grimshawi DGRIM 6 FBpp0408267, FBpp0155788, FBpp0157964, FBpp0155786, FBpp0415529, FBpp0155782
Lucilia cuprina LCUPR 6 KNC32879, KNC26553, KNC33957, KNC33954, KNC34875, KNC33953
Musca domestica MDOME 1 MDOA002619-PA
Stomoxys calcitrans SCALC 2 SCAU016236-PA, SCAU007950-PA
Glossina brevipalpis GBREV 2 GBRI004540-PA, GBRI011369-PA
Glossina palpalis GPALP 1 GPPI013240-PA
Glossina austeni GAUST 2 GAUT018050-PA, GAUT047993-PA
Glossina pallidipes GPALL 2 GPAI039739-PA, GPAI012098-PA
Glossina morsitans GMORS 2 GMOY010525-PA, GMOY001924-PA

Gene tree

Chironomidae-wide analysis

The Orthogroup for the longest transcript (g6775.t2) is OG0000060. Other genes in this orthogroup contains the following. [This data uses ab initio gene models predicted in Yoshida et al 2022, so most genes are not registered in public databases. Please contact the authors for more information on these data.]

Conservation

Organism Abb. ID Ortholog ID
Podonomus sp PODON TRINITY_DN98638_c0_g1_i1.p3, TRINITY_DN31115_c0_g1_i5.p1, TRINITY_DN3042_c0_g2_i1.p1, TRINITY_DN10250_c0_g1_i4.p1, TRINITY_DN30310_c0_g1_i1.p1, TRINITY_DN4638_c0_g1_i13.p1, TRINITY_DN14843_c0_g1_i1.p2, TRINITY_DN54732_c1_g1_i1.p1
Parochlus steinenii PSTEI PSG12361, PSG07983, PSG03687, PSG08688, PSG03672
Trissopelopia nemorum TNEMO TRINITY_DN1712_c1_g2_i1.p1, TRINITY_DN1981_c0_g1_i10.p1, TRINITY_DN1712_c0_g1_i1.p1, TRINITY_DN41393_c0_g1_i1.p1, TRINITY_DN46879_c0_g1_i1.p1, TRINITY_DN24333_c0_g1_i1.p1, TRINITY_DN1712_c1_g1_i1.p1
Paraheptagyia tonnoiri PTONN TRINITY_DN4229_c1_g1_i1.p1, TRINITY_DN10084_c0_g1_i1.p2, TRINITY_DN2606_c0_g2_i4.p1, TRINITY_DN5152_c0_g1_i3.p1, TRINITY_DN29978_c0_g1_i1.p1, TRINITY_DN2575_c0_g2_i5.p1, TRINITY_DN12498_c0_g1_i1.p1, TRINITY_DN29013_c0_g1_i1.p1
Telmatogeton pecinata TPECI TRINITY_DN2808_c0_g2_i3.p1, TRINITY_DN15546_c0_g1_i1.p4, TRINITY_DN11502_c0_g1_i2.p1, TRINITY_DN7073_c0_g1_i3.p1, TRINITY_DN4354_c0_g1_i3.p1, TRINITY_DN10517_c0_g1_i3.p1, TRINITY_DN0_c5729_g1_i1.p1
Cricotopus draysoni CDRAY TRINITY_DN29122_c0_g1_i1.p1, TRINITY_DN26806_c0_g1_i1.p1, TRINITY_DN9108_c0_g1_i6.p1, TRINITY_DN54194_c0_g1_i1.p1, TRINITY_DN10843_c0_g1_i1.p1, TRINITY_DN30245_c0_g1_i1.p1, TRINITY_DN45010_c0_g1_i1.p1, TRINITY_DN61161_c0_g1_i1.p1, TRINITY_DN16330_c0_g1_i1.p1, TRINITY_DN26683_c0_g1_i1.p1, TRINITY_DN56465_c0_g1_i1.p1, TRINITY_DN20270_c0_g1_i1.p1, TRINITY_DN4160_c0_g1_i2.p1, TRINITY_DN11074_c0_g1_i1.p1, TRINITY_DN30159_c0_g1_i1.p1
Clunio marinus CMARI CRL08606.1, CRL08604.1, CRK88329.1, CRL06704.1, CRK97375.1
Cardiocladius sp CARDI TRINITY_DN3139_c0_g1_i1.p1, TRINITY_DN2223_c0_g1_i5.p1, TRINITY_DN27774_c0_g1_i1.p1, TRINITY_DN11093_c0_g1_i7.p1, TRINITY_DN982_c0_g1_i8.p1, TRINITY_DN8907_c0_g1_i2.p1
Belgica antarctica BANTA IU25_10064-mRNA-1, IU25_02493-mRNA-1, IU25_02491-mRNA-1, IU25_02492-mRNA-1, IU25_02490-mRNA-1
Kiefferophyes invenustulus KINVE TRINITY_DN8414_c0_g4_i1.p1, TRINITY_DN26464_c0_g1_i3.p1, TRINITY_DN95540_c0_g2_i3.p1, TRINITY_DN271295_c0_g1_i1.p2, TRINITY_DN34141_c0_g1_i1.p1, TRINITY_DN23817_c0_g1_i1.p2, TRINITY_DN19455_c0_g1_i4.p1, TRINITY_DN239208_c0_g1_i1.p1, TRINITY_DN20676_c0_g1_i1.p1, TRINITY_DN8414_c0_g2_i1.p1, TRINITY_DN6188_c0_g1_i11.p1, TRINITY_DN8414_c0_g1_i2.p1, TRINITY_DN52794_c0_g1_i1.p1, TRINITY_DN187816_c0_g1_i1.p1, TRINITY_DN23817_c0_g2_i1.p1, TRINITY_DN199033_c0_g1_i1.p1, TRINITY_DN255399_c0_g1_i1.p1, TRINITY_DN47527_c0_g1_i1.p1, TRINITY_DN19174_c0_g1_i1.p1, TRINITY_DN8680_c0_g1_i4.p1, TRINITY_DN192007_c0_g1_i1.p1, TRINITY_DN62298_c0_g1_i1.p2, TRINITY_DN173436_c0_g1_i1.p1, TRINITY_DN8414_c0_g3_i1.p1, TRINITY_DN190692_c0_g1_i1.p1, TRINITY_DN49156_c0_g2_i1.p1
Chironomus riparius CRIPA g17321.t1, g5847.t1, g5845.t1, g5843.t1, g8807.t1, g5848.t1, g143.t1, g5846.t1, g5844.t1, g8895.t1, g8806.t1
Chironomus columbiensis CCOLU TRINITY_DN7756_c0_g1_i4.p1, TRINITY_DN6863_c0_g2_i2.p1, TRINITY_DN18251_c0_g1_i1.p1, TRINITY_DN4757_c0_g1_i1.p1, TRINITY_DN6863_c1_g1_i2.p1, TRINITY_DN6689_c0_g1_i3.p1, TRINITY_DN6863_c0_g1_i2.p1, TRINITY_DN198_c0_g1_i4.p1, TRINITY_DN198_c0_g2_i1.p1, TRINITY_DN7826_c0_g1_i1.p1, TRINITY_DN11435_c0_g1_i1.p1, TRINITY_DN12248_c0_g1_i1.p1, TRINITY_DN6689_c1_g1_i2.p1, TRINITY_DN198_c1_g1_i1.p1, TRINITY_DN4463_c0_g1_i1.p1, TRINITY_DN13309_c0_g1_i1.p1
Chironomus tentans CTENT g7569.t1, g7645.t1, g5471.t1, g17886.t1, g6126.t1, g7644.t1, g10215.t1, g14664.t1, g3466.t1, g14665.t1, g5470.t1, g5469.t1, g7570.t1, g8177.t1, g17140.t1
Chironomus dilutus CDILU TRINITY_DN8490_c0_g1_i3.p1, TRINITY_DN750_c1_g1_i1.p1, TRINITY_DN3712_c0_g1_i3.p1, TRINITY_DN8173_c0_g3_i1.p1, TRINITY_DN106_c0_g1_i2.p1, TRINITY_DN577_c7_g1_i1.p1, TRINITY_DN8173_c1_g1_i2.p1, TRINITY_DN8173_c0_g1_i2.p1, TRINITY_DN106_c0_g2_i3.p1, TRINITY_DN20747_c0_g1_i1.p1, TRINITY_DN8173_c0_g2_i1.p1, TRINITY_DN3712_c0_g2_i4.p1
Polypedilum nubifer PNUBI Pn.08765, Pn.08760, Pn.02808, Pn.13119, Pn.08766, Pn.08764, Pn.08767, Pn.06818, Pn.11583, Pn.06817, Pn.08763, Pn.02809, Pn.00744, Pn.08762, Pn.08768
Polypedilum vanderplanki PVAND g1960.t1, g7125.t1, g6778.t1, g6776.t1, g6775.t2, g1959.t1, g6799.t1, g1961.t1, g881.t1, g6798.t1, g6797.t1, g6774.t1, g6779.t1, g6777.t1
Polypedilum pembai PPEMB g13766.t1
Culicoides sonorensis CSONO CSON010344-1, CSON005967-1, CSON012748-1, CSON011723-1, CSON000210-1
Aedes aegypti lvpagwg AAEGYL AAEL013491-PA, AAEL013483-PA, AAEL002493-PA
Anopheles gambiae AGAMB AGAP007662-PA, AGAP005980-PA, AGAP007572-PA

Gene tree

Expression profile for this gene

Gene-level expression profile

Raw TPM values

Expression profile of isoforms

A heatmap representing isoforms with TPM > 0 in at least one sample. Expression profiles were are clustered based on the spearman correlation