Gene loci information

Isoforms of this gene

  • There are 2 isoforms that are expressed from this gene.
  • The longest transcript is g6804.t1
  • List of isoforms

g6804.t1, g6804.t2

The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively.

KEGG

Orthology

Pathway

  • This gene belongs to the following 1 pathways
ko04217
ko04613
ko05034
ko05322

This gene has too many mapped pathways (>3). Please look at the original KEGG entry above for pathway visualization.

Gene conservation patterns

Diptera wide analysis

The Orthogroup for the longest transcript (g6804.t1) is OG0000026. Other genes in this orthogroup contains the following. This list is ordered by phylogeny determined by OrthoFinder analysis. Genes from ENSEMBL are linked to their corresponding pages. For P. nubifer and P. vanderplanki, they are linked to the Midgebase1 and Midgebase2 pages.

Conservation

Organism Abb. ID No. Orthologs Ortholog ID
Atta cephalotes ACEPH 6 XP_012063598.1, XP_012062739.1, XP_012055790.1, XP_012059083.1, XP_012059084.1, XP_012055625.1
Apis mellifera AMELL 6 GB47381-PA, GB47507-PA, GB47483-PA, GB44760-PA, GB43303-PA, GB52976-PA
Culicoides sonorensis CSONO 3 CSON015242-1, CSON003090-1, CSON000689-1
Polypedilum nubifer PNUBI 5 Pn.01170, Pn.16391, Pn.08257, Pn.06063, Pn.05262
Polypedilum vanderplanki PVAND 23 g8907.t1, g8461.t1, g7427.t1, g6760.t1, g1647.t20, g6804.t1, g14173.t1, g9501.t1, g7404.t1, g8246.t1, g7432.t1, g1108.t1, g6808.t1, g1109.t1, g2449.t1, g663.t1, g2445.t1, g17654.t1, g8901.t1, g6756.t1, g6759.t1, g7413.t1, g7426.t1
Polypedilum pembai PPEMB 5 g8922.t1, g13217.t1, g3966.t1, g359.t1, g432.t1
Belgica antarctica BANTA 4 IU25_10944-mRNA-1, IU25_09090-mRNA-1, IU25_12912-mRNA-1, IU25_00795-mRNA-1
Clunio marinus CMARI 8 CRL07070.1, CRL07057.1, CRL07117.1, CRK94777.1, CRL07053.1, CRL07067.1, CRL07048.1, CRL07062.1
Aedes aegypti lvpagwg AAEGYL 34 AAEL021778-PA, AAEL020066-PA, AAEL022071-PA, AAEL022197-PA, AAEL020675-PA, AAEL003687-PB, AAEL027513-PA, AAEL022161-PA, AAEL020348-PA, AAEL020249-PA, AAEL021518-PA, AAEL025828-PA, AAEL022584-PA, AAEL007005-PA, AAEL022643-PA, AAEL023603-PA, AAEL020927-PA, AAEL021053-PA, AAEL020050-PA, AAEL022062-PA, AAEL020601-PA, AAEL021158-PA, AAEL021638-PA, AAEL003706-PB, AAEL003669-PA, AAEL012499-PA, AAEL021459-PA, AAEL020309-PA, AAEL021193-PA, AAEL020605-PA, AAEL021644-PA, AAEL021347-PA, AAEL021635-PA, AAEL020887-PA
Culex quinquefasciatus quinquefasciatus CQUINQ 27 EDS37410.1, EDS37358.1, EDS37380.1, EDS37348.1, EDS37398.1, EDS37367.1, EDS34374.1, EDS37389.1, EDS29830.1, EDS37402.1, EDS37406.1, EDS37387.1, EDS31487.1, EDS37393.1, EDS41767.1, EDS34170.1, EDS37363.1, EDS37414.1, EDS41423.1, EDS37422.1, EDS41245.1, EDS37371.1, EDS37418.1, EDS26754.1, EDS41773.1, EDS34367.1, EDS37376.1
Culex quinquefasciatus CQUIN 27 CPIJ012454-PA, CPIJ012403-PA, CPIJ008494-PA, CPIJ005867-PA, CPIJ012438-PA, CPIJ012421-PA, CPIJ012434-PA, CPIJ012395-PA, CPIJ001452-PA, CPIJ012430-PA, CPIJ012419-PA, CPIJ012390-PA, CPIJ012450-PA, CPIJ012408-PA, CPIJ004104-PA, CPIJ015004-PA, CPIJ012412-PA, CPIJ010353-PA, CPIJ015010-PA, CPIJ012442-PA, CPIJ020277-PA, CPIJ012425-PA, CPIJ012446-PA, CPIJ012380-PA, CPIJ010360-PA, CPIJ012399-PA, CPIJ014767-PA
Anopheles atroparvus AATRO 4 AATE013400-PA, AATE012462-PA, AATE018867-PA, AATE009664-PA
Anopheles sinensis china ASINEC 3 ASIC018178-PA, ASIC007127-PA, ASIC018203-PA
Anopheles dirus ADIRU 5 ADIR005579-PA, ADIR002344-PA, ADIR005293-PA, ADIR005586-PA, ADIR001877-PA
Anopheles farauti AFARA 3 AFAF019140-PA, AFAF007906-PA, AFAF001477-PA
Anopheles epiroticus AEPIR 3 AEPI015032-PA, AEPI001982-PA, AEPI000531-PA
Anopheles christyi ACHRI 2 ACHR006507-PA, ACHR003277-PA
Anopheles merus AMERU 2 AMEM008412-PA, AMEM000491-PA
Anopheles melas AMELA 3 AMEC004122-PA, AMEC001966-PA, AMEC010636-PA
Anopheles arabiensis AARAB 3 AARA000660-PA, AARA015885-PA, AARA010639-PA
Anopheles coluzzii ACOLU 1 ACOM026445-PA
Anopheles coluzzii ngousso ACOLUN 7 ACON012711-PA, ACON012198-PA, ACON003913-PA, ACON000306-PA, ACON012895-PA, ACON003911-PA, ACON011845-PA
Anopheles gambiae AGAMB 7 AGAP012198-PA, AGAP012895-PA, AGAP011845-PA, AGAP003913-PA, AGAP012711-PA, AGAP003911-PA, AGAP000306-PA
Anopheles quadriannulatus AQUAD 3 AQUA009058-PA, AQUA007304-PA, AQUA016028-PA
Anopheles minimus AMINI 3 AMIN015675-PA, AMIN008550-PA, AMIN001967-PA
Anopheles culicifacies ACULI 4 ACUA027930-PA, ACUA027788-PA, ACUA027098-PA, ACUA013618-PA
Anopheles funestus AFUNE 3 AFUN002601-PA, AFUN015753-PA, AFUN007339-PA
Anopheles stephensi indian ASTEPI 5 ASTEI10808-PA, ASTEI10804-PA, ASTEI07838-PA, ASTEI05246-PA, ASTEI05061-PA
Anopheles stephensi ASTEP 3 ASTE015856-PA, ASTE000383-PA, ASTE005688-PA
Anopheles albimanus AALBI 4 AALB015687-PA, AALB015691-PA, AALB007557-PA, AALB001574-PA
Anopheles darlingi ADARL 3 ADAC009797-PA, ADAC006363-PA, ADAC000018-PA
Drosophila willistoni DWILL 11 FBpp0239522, FBpp0252769, FBpp0247852, FBpp0247643, FBpp0378983, FBpp0376878, FBpp0248055, FBpp0239525, FBpp0250153, FBpp0374202, FBpp0378998
Drosophila pseudoobscura DPSEU 6 FBpp0332544, FBpp0339451, FBpp0282677, FBpp0336350, FBpp0339062, FBpp0333085
Drosophila persimilis DPERS 11 FBpp0188064, FBpp0186371, FBpp0191334, FBpp0188060, FBpp0188057, FBpp0188067, FBpp0181192, FBpp0180139, FBpp0188071, FBpp0181910, FBpp0188070
Drosophila ananassae DANAN 26 FBpp0123451, FBpp0126616, FBpp0119650, FBpp0122056, FBpp0342555, FBpp0347516, FBpp0123842, FBpp0122501, FBpp0125414, FBpp0122173, FBpp0126053, FBpp0126049, FBpp0124707, FBpp0114211, FBpp0346417, FBpp0125447, FBpp0119081, FBpp0122472, FBpp0127778, FBpp0124712, FBpp0125507, FBpp0125475, FBpp0123732, FBpp0123870, FBpp0119078, FBpp0119113
Drosophila melanogaster DMELA 21 FBpp0091102, FBpp0091093, FBpp0091090, FBpp0091078, FBpp0091105, FBpp0091060, FBpp0091084, FBpp0091108, FBpp0091111, FBpp0091099, FBpp0091072, FBpp0091081, FBpp0091096, FBpp0091063, FBpp0091066, FBpp0084434, FBpp0085249, FBpp0091087, FBpp0091055, FBpp0091075, FBpp0091069
Drosophila sechellia DSECH 36 FBpp0193129, FBpp0193189, FBpp0192588, FBpp0193187, FBpp0195138, FBpp0194659, FBpp0195003, FBpp0192645, FBpp0192660, FBpp0194691, FBpp0192642, FBpp0193470, FBpp0194478, FBpp0197639, FBpp0193128, FBpp0195023, FBpp0203525, FBpp0194646, FBpp0195058, FBpp0201192, FBpp0197587, FBpp0192657, FBpp0197579, FBpp0197663, FBpp0197708, FBpp0194672, FBpp0191825, FBpp0193159, FBpp0194428, FBpp0192051, FBpp0193184, FBpp0195090, FBpp0193752, FBpp0208200, FBpp0193549, FBpp0201235
Drosophila simulans DSIMU 6 FBpp0327885, FBpp0327798, FBpp0315068, FBpp0222871, FBpp0219712, FBpp0328016
Drosophila erecta DEREC 11 FBpp0371161, FBpp0139868, FBpp0139851, FBpp0134895, FBpp0138386, FBpp0139855, FBpp0139878, FBpp0139861, FBpp0139865, FBpp0130052, FBpp0139858
Drosophila yakuba DYAKU 7 FBpp0362164, FBpp0259588, FBpp0259584, FBpp0354998, FBpp0260137, FBpp0268706, FBpp0260152
Drosophila virilis DVIRI 25 FBpp0229037, FBpp0238123, FBpp0232817, FBpp0238108, FBpp0236991, FBpp0238113, FBpp0233650, FBpp0233987, FBpp0230758, FBpp0229864, FBpp0234231, FBpp0229041, FBpp0229580, FBpp0229587, FBpp0232252, FBpp0238121, FBpp0238127, FBpp0238110, FBpp0234230, FBpp0230762, FBpp0234203, FBpp0225551, FBpp0396183, FBpp0229953, FBpp0228998
Drosophila mojavensis DMOJA 12 FBpp0172658, FBpp0166471, FBpp0166467, FBpp0163740, FBpp0174095, FBpp0172661, FBpp0166469, FBpp0384681, FBpp0172656, FBpp0166109, FBpp0172662, FBpp0171094
Drosophila grimshawi DGRIM 28 FBpp0408515, FBpp0159063, FBpp0157781, FBpp0157803, FBpp0157249, FBpp0157243, FBpp0159065, FBpp0157397, FBpp0159060, FBpp0157409, FBpp0145644, FBpp0146914, FBpp0159057, FBpp0158262, FBpp0159067, FBpp0157955, FBpp0146315, FBpp0157669, FBpp0157784, FBpp0157241, FBpp0157246, FBpp0159053, FBpp0145646, FBpp0156400, FBpp0157411, FBpp0157672, FBpp0157236, FBpp0157693
Lucilia cuprina LCUPR 4 KNC23333, KNC23328, KNC34500, KNC23909
Musca domestica MDOME 4 MDOA016866-PA, MDOA008487-PA, MDOA014869-PA, MDOA012937-PB
Stomoxys calcitrans SCALC 3 SCAU009412-PA, SCAU001845-PA, SCAU016353-PA
Glossina brevipalpis GBREV 5 GBRI025726-PA, GBRI005598-PA, GBRI022645-PA, GBRI025826-PA, GBRI007335-PA
Glossina palpalis GPALP 3 GPPI050169-PA, GPPI041012-PA, GPPI034002-PA
Glossina austeni GAUST 2 GAUT043604-PA, GAUT004935-PA
Glossina pallidipes GPALL 2 GPAI018103-PA, GPAI036467-PA
Glossina morsitans GMORS 4 GMOY011800-PA, GMOY000267-PA, GMOY006512-PA, GMOY009986-PA

Gene tree

Chironomidae-wide analysis

The Orthogroup for the longest transcript (g6804.t1) is OG0000089. Other genes in this orthogroup contains the following. [This data uses ab initio gene models predicted in Yoshida et al 2022, so most genes are not registered in public databases. Please contact the authors for more information on these data.]

Conservation

Organism Abb. ID Ortholog ID
Podonomus sp PODON TRINITY_DN120813_c0_g1_i1.p1, TRINITY_DN128051_c0_g1_i1.p1, TRINITY_DN21361_c0_g1_i3.p1
Parochlus steinenii PSTEI PSG12385, PSG06956
Trissopelopia nemorum TNEMO TRINITY_DN4985_c0_g2_i1.p1, TRINITY_DN4985_c0_g1_i6.p1, TRINITY_DN380_c0_g3_i1.p1, TRINITY_DN30268_c0_g1_i1.p1
Paraheptagyia tonnoiri PTONN TRINITY_DN4388_c0_g1_i1.p1, TRINITY_DN225_c1_g3_i1.p1
Telmatogeton pecinata TPECI TRINITY_DN0_c9785_g1_i1.p1, TRINITY_DN36603_c0_g1_i1.p1, TRINITY_DN25837_c1_g1_i1.p1, TRINITY_DN6994_c0_g1_i8.p1, TRINITY_DN45982_c0_g1_i1.p1, TRINITY_DN25837_c0_g1_i1.p1
Cricotopus draysoni CDRAY TRINITY_DN21040_c0_g1_i1.p1, TRINITY_DN97391_c0_g1_i1.p4, TRINITY_DN63577_c0_g1_i1.p1, TRINITY_DN33158_c0_g1_i1.p1, TRINITY_DN86182_c0_g1_i1.p1, TRINITY_DN66882_c0_g1_i1.p2, TRINITY_DN10074_c0_g1_i1.p2, TRINITY_DN13048_c0_g1_i1.p1, TRINITY_DN2507_c0_g1_i1.p1, TRINITY_DN49929_c0_g1_i1.p1, TRINITY_DN14001_c0_g1_i1.p1, TRINITY_DN73903_c0_g1_i1.p1, TRINITY_DN35448_c0_g1_i1.p1, TRINITY_DN23464_c0_g1_i1.p1, TRINITY_DN21198_c0_g1_i1.p1, TRINITY_DN17750_c0_g1_i1.p1, TRINITY_DN5340_c1_g1_i1.p1, TRINITY_DN33799_c0_g1_i1.p1, TRINITY_DN70013_c0_g1_i1.p1
Clunio marinus CMARI CRL07070.1, CRL07057.1, CRL07117.1, CRK94777.1, CRL07053.1, CRL07067.1, CRL07048.1, CRL07062.1
Cardiocladius sp CARDI TRINITY_DN52793_c0_g1_i1.p1, TRINITY_DN12946_c0_g1_i2.p1
Belgica antarctica BANTA IU25_12912-mRNA-1, IU25_00795-mRNA-1
Kiefferophyes invenustulus KINVE TRINITY_DN59319_c1_g1_i1.p1, TRINITY_DN33382_c0_g1_i10.p1
Chironomus riparius CRIPA g1641.t1, g9524.t1, g16523.t1, g14694.t1, g11590.t1, g12155.t1, g12128.t1
Chironomus columbiensis CCOLU TRINITY_DN133_c0_g1_i2.p1, TRINITY_DN51888_c0_g1_i1.p1, TRINITY_DN82153_c0_g1_i1.p1, TRINITY_DN25305_c0_g1_i1.p1, TRINITY_DN11296_c0_g1_i1.p1, TRINITY_DN17648_c0_g1_i1.p1, TRINITY_DN6950_c0_g1_i1.p1, TRINITY_DN25221_c0_g1_i1.p1, TRINITY_DN16160_c0_g1_i1.p4, TRINITY_DN2187_c0_g1_i1.p1, TRINITY_DN1491_c0_g1_i1.p1, TRINITY_DN6950_c0_g2_i2.p1, TRINITY_DN11296_c1_g1_i10.p1, TRINITY_DN81291_c0_g1_i1.p1, TRINITY_DN11296_c0_g2_i1.p1, TRINITY_DN4200_c0_g1_i1.p1
Chironomus tentans CTENT g5025.t1, g13555.t1, g1761.t1, g14143.t1, g139.t1, g12195.t1
Chironomus dilutus CDILU TRINITY_DN36357_c0_g1_i1.p1, TRINITY_DN129_c0_g1_i12.p1, TRINITY_DN49432_c0_g1_i1.p1, TRINITY_DN8836_c0_g1_i1.p1, TRINITY_DN11205_c0_g1_i2.p1, TRINITY_DN16741_c1_g1_i8.p1, TRINITY_DN3073_c0_g1_i1.p1, TRINITY_DN39884_c0_g1_i1.p1, TRINITY_DN3073_c0_g2_i2.p1, TRINITY_DN11274_c0_g1_i1.p1
Polypedilum nubifer PNUBI Pn.01170, Pn.16391, Pn.08257, Pn.06063, Pn.05262
Polypedilum vanderplanki PVAND g8907.t1, g8461.t1, g7427.t1, g6760.t1, g1647.t20, g6804.t1, g14173.t1, g9501.t1, g7404.t1, g8246.t1, g7432.t1, g1108.t1, g6808.t1, g1109.t1, g2449.t1, g663.t1, g2445.t1, g17654.t1, g8901.t1, g6756.t1, g6759.t1, g7413.t1, g7426.t1
Polypedilum pembai PPEMB g8922.t1, g13217.t1, g3966.t1, g359.t1, g432.t1
Culicoides sonorensis CSONO CSON015242-1, CSON003090-1, CSON000689-1
Aedes aegypti lvpagwg AAEGYL AAEL021778-PA, AAEL020066-PA, AAEL022071-PA, AAEL022197-PA, AAEL020675-PA, AAEL003687-PB, AAEL022161-PA, AAEL020348-PA, AAEL020249-PA, AAEL021518-PA, AAEL025828-PA, AAEL022584-PA, AAEL007005-PA, AAEL022643-PA, AAEL023603-PA, AAEL020927-PA, AAEL021053-PA, AAEL020050-PA, AAEL022062-PA, AAEL020601-PA, AAEL021158-PA, AAEL021638-PA, AAEL003706-PB, AAEL003669-PA, AAEL012499-PA, AAEL021459-PA, AAEL020309-PA, AAEL025689-PA, AAEL021193-PA, AAEL020605-PA, AAEL021644-PA, AAEL021347-PA, AAEL021635-PA, AAEL020887-PA
Anopheles gambiae AGAMB AGAP012198-PA, AGAP012895-PA, AGAP011845-PA, AGAP003913-PA, AGAP012711-PA, AGAP003911-PA, AGAP000306-PA

Gene tree

Expression profile for this gene

Gene-level expression profile

Raw TPM values

Expression profile of isoforms

A heatmap representing isoforms with TPM > 0 in at least one sample. Expression profiles were are clustered based on the spearman correlation