Gene loci information

Isoforms of this gene

  • There are 3 isoforms that are expressed from this gene.
  • The longest transcript is g7244.t1
  • List of isoforms

g7244.t1, g7244.t2, g7244.t3

The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively.

KEGG

Pathway

  • This gene belongs to the following 1 pathways
ko01523
ko04977
ko04978

Gene conservation patterns

Diptera wide analysis

The Orthogroup for the longest transcript (g7244.t1) is OG0000190. Other genes in this orthogroup contains the following. This list is ordered by phylogeny determined by OrthoFinder analysis. Genes from ENSEMBL are linked to their corresponding pages. For P. nubifer and P. vanderplanki, they are linked to the Midgebase1 and Midgebase2 pages.

Conservation

Organism Abb. ID No. Orthologs Ortholog ID
Atta cephalotes ACEPH 1 XP_012057927.1
Apis mellifera AMELL 1 GB49339-PA
Culicoides sonorensis CSONO 4 CSON015380-1, CSON003714-1, CSON003653-2, CSON012083-1
Polypedilum nubifer PNUBI 4 Pn.14438, Pn.05326, Pn.01732, Pn.08626
Polypedilum vanderplanki PVAND 6 g2841.t1, g12690.t2, g12692.t1, g15300.t1, g7244.t1, g12691.t1
Polypedilum pembai PPEMB 5 g11197.t1, g13277.t1, g3530.t1, g3529.t1, g11551.t1
Belgica antarctica BANTA 4 IU25_12492-mRNA-1, IU25_12795-mRNA-1, IU25_02136-mRNA-1, IU25_09031-mRNA-1
Clunio marinus CMARI 3 CRK90819.1, CRK91837.1, CRK91838.1
Aedes aegypti lvpagwg AAEGYL 5 AAEL001699-PA, AAEL001697-PB, AAEL009513-PB, AAEL001691-PA, AAEL001687-PA
Culex quinquefasciatus quinquefasciatus CQUINQ 6 EDS41291.1, EDS41670.1, EDS41669.1, EDS41672.1, EDS45245.1, EDS41668.1
Culex quinquefasciatus CQUIN 6 CPIJ015152-PA, CPIJ000658-PA, CPIJ017354-PA, CPIJ015155-PA, CPIJ015153-PA, CPIJ015151-PA
Anopheles atroparvus AATRO 2 AATE004126-PA, AATE010662-PA
Anopheles sinensis china ASINEC 3 ASIC012203-PA, ASIC012204-PA, ASIC012202-PA
Anopheles dirus ADIRU 3 ADIR014326-PA, ADIR003853-PA, ADIR003852-PA
Anopheles farauti AFARA 1 AFAF015606-PA
Anopheles epiroticus AEPIR 2 AEPI006026-PA, AEPI006025-PA
Anopheles christyi ACHRI 2 ACHR000686-PA, ACHR000687-PA
Anopheles merus AMERU 3 AMEM019591-PA, AMEM019590-PA, AMEM015925-PA
Anopheles melas AMELA 3 AMEC018929-PA, AMEC014022-PA, AMEC010109-PA
Anopheles arabiensis AARAB 3 AARA017779-PA, AARA017780-PA, AARA002472-PA
Anopheles coluzzii ACOLU 2 ACOM027843-PA, ACOM027849-PA
Anopheles coluzzii ngousso ACOLUN 3 ACON005318-PA, ACON005317-PA, ACON005319-PA
Anopheles gambiae AGAMB 3 AGAP005319-PA, AGAP005318-PA, AGAP005317-PA
Anopheles quadriannulatus AQUAD 2 AQUA007751-PA, AQUA007752-PA
Anopheles minimus AMINI 2 AMIN007583-PA, AMIN007582-PA
Anopheles culicifacies ACULI 2 ACUA022543-PA, ACUA021596-PA
Anopheles funestus AFUNE 3 AFUN021237-PA, AFUN021236-PA, AFUN003027-PA
Anopheles stephensi indian ASTEPI 2 ASTEI07274-PA, ASTEI07275-PA
Anopheles stephensi ASTEP 2 ASTE010534-PA, ASTE010533-PA
Anopheles albimanus AALBI 2 AALB004172-PA, AALB004171-PA
Anopheles darlingi ADARL 3 ADAC002302-PA, ADAC002304-PA, ADAC002303-PA
Drosophila willistoni DWILL 8 FBpp0374618, FBpp0251753, FBpp0252011, FBpp0252482, FBpp0252485, FBpp0379144, FBpp0378967, FBpp0252010
Drosophila pseudoobscura DPSEU 5 FBpp0276089, FBpp0278451, FBpp0292184, FBpp0276088, FBpp0278450
Drosophila persimilis DPERS 6 FBpp0181570, FBpp0181118, FBpp0178065, FBpp0189463, FBpp0181117, FBpp0181569
Drosophila ananassae DANAN 5 FBpp0116140, FBpp0119792, FBpp0344559, FBpp0115154, FBpp0116141
Drosophila melanogaster DMELA 5 FBpp0113090, FBpp0288640, FBpp0293860, FBpp0087701, FBpp0087664
Drosophila sechellia DSECH 5 FBpp0202580, FBpp0202101, FBpp0202103, FBpp0193585, FBpp0202582
Drosophila simulans DSIMU 5 FBpp0313841, FBpp0209040, FBpp0208500, FBpp0313475, FBpp0208501
Drosophila erecta DEREC 5 FBpp0130435, FBpp0129122, FBpp0141968, FBpp0370612, FBpp0129124
Drosophila yakuba DYAKU 5 FBpp0268348, FBpp0267520, FBpp0356510, FBpp0267510, FBpp0264271
Drosophila virilis DVIRI 4 FBpp0225073, FBpp0231940, FBpp0232987, FBpp0232992
Drosophila mojavensis DMOJA 4 FBpp0169036, FBpp0168933, FBpp0159656, FBpp0169037
Drosophila grimshawi DGRIM 4 FBpp0153776, FBpp0155917, FBpp0148250, FBpp0411037
Lucilia cuprina LCUPR 2 KNC31125, KNC31141
Musca domestica MDOME 3 MDOA008549-PA, MDOA009628-PC, MDOA008638-PA
Stomoxys calcitrans SCALC 3 SCAU014907-PA, SCAU014473-PA, SCAU000650-PA
Glossina brevipalpis GBREV 2 GBRI025433-PA, GBRI025438-PA
Glossina palpalis GPALP 3 GPPI016367-PA, GPPI050425-PA, GPPI016375-PA
Glossina austeni GAUST 4 GAUT043378-PA, GAUT022688-PA, GAUT051380-PA, GAUT051377-PA
Glossina pallidipes GPALL 7 GPAI045264-PA, GPAI028229-PA, GPAI001546-PA, GPAI045251-PA, GPAI001549-PA, GPAI001548-PA, GPAI001547-PA
Glossina morsitans GMORS 3 GMOY000158-PA, GMOY000269-PA, GMOY004782-PA

Gene tree

Chironomidae-wide analysis

The Orthogroup for the longest transcript (g7244.t1) is OG0000418. Other genes in this orthogroup contains the following. [This data uses ab initio gene models predicted in Yoshida et al 2022, so most genes are not registered in public databases. Please contact the authors for more information on these data.]

Conservation

Organism Abb. ID Ortholog ID
Podonomus sp PODON TRINITY_DN3187_c4_g1_i1.p1, TRINITY_DN58908_c0_g1_i1.p1, TRINITY_DN55672_c0_g1_i1.p1
Parochlus steinenii PSTEI PSG05266
Trissopelopia nemorum TNEMO TRINITY_DN9963_c0_g1_i1.p1, TRINITY_DN37553_c0_g1_i1.p1, TRINITY_DN48916_c0_g1_i1.p1, TRINITY_DN2983_c0_g1_i2.p1, TRINITY_DN18894_c0_g1_i2.p1
Paraheptagyia tonnoiri PTONN TRINITY_DN1825_c0_g1_i1.p1
Telmatogeton pecinata TPECI TRINITY_DN8711_c0_g2_i1.p1, TRINITY_DN8711_c0_g1_i1.p1, TRINITY_DN7384_c0_g1_i1.p1
Cricotopus draysoni CDRAY TRINITY_DN5364_c5_g1_i1.p1, TRINITY_DN35945_c0_g1_i1.p1, TRINITY_DN23393_c0_g1_i1.p1, TRINITY_DN24101_c0_g1_i1.p1, TRINITY_DN9965_c0_g1_i1.p1, TRINITY_DN15222_c0_g1_i1.p1, TRINITY_DN30679_c0_g1_i1.p1
Clunio marinus CMARI CRK90819.1, CRK91837.1, CRK91838.1
Cardiocladius sp CARDI TRINITY_DN1334_c0_g1_i3.p1, TRINITY_DN59421_c0_g1_i1.p1, TRINITY_DN29674_c0_g1_i1.p1
Belgica antarctica BANTA IU25_12492-mRNA-1, IU25_12795-mRNA-1, IU25_02136-mRNA-1, IU25_09031-mRNA-1
Kiefferophyes invenustulus KINVE TRINITY_DN19920_c0_g1_i1.p1, TRINITY_DN202274_c0_g1_i1.p1, TRINITY_DN2387_c0_g2_i7.p1, TRINITY_DN93095_c0_g1_i1.p1, TRINITY_DN19093_c0_g1_i8.p1, TRINITY_DN44562_c0_g1_i8.p1, TRINITY_DN2387_c1_g1_i5.p1, TRINITY_DN67249_c0_g1_i1.p1, TRINITY_DN181059_c0_g1_i1.p1, TRINITY_DN90808_c0_g1_i1.p1, TRINITY_DN3447_c0_g5_i2.p1, TRINITY_DN80098_c0_g1_i1.p1, TRINITY_DN2387_c2_g1_i1.p1, TRINITY_DN3447_c0_g1_i1.p1
Chironomus riparius CRIPA g8412.t1, g7789.t1
Chironomus columbiensis CCOLU TRINITY_DN9400_c0_g1_i1.p1, TRINITY_DN14652_c0_g1_i2.p1, TRINITY_DN2448_c0_g1_i1.p1, TRINITY_DN13551_c0_g1_i1.p1
Chironomus tentans CTENT g2593.t1, g9546.t1
Chironomus dilutus CDILU TRINITY_DN4558_c0_g1_i1.p1, TRINITY_DN9490_c0_g2_i2.p1
Polypedilum nubifer PNUBI Pn.14438, Pn.05326, Pn.01732, Pn.08626
Polypedilum vanderplanki PVAND g2841.t1, g12690.t2, g12692.t1, g15300.t1, g7244.t1, g12691.t1
Polypedilum pembai PPEMB g11197.t1, g13277.t1, g3530.t1, g3529.t1, g11551.t1
Culicoides sonorensis CSONO CSON015380-1, CSON003714-1, CSON003653-2, CSON012083-1
Aedes aegypti lvpagwg AAEGYL AAEL001699-PA, AAEL001697-PB, AAEL009513-PB, AAEL001691-PA, AAEL001687-PA
Anopheles gambiae AGAMB AGAP005319-PA, AGAP005318-PA, AGAP005317-PA

Gene tree

Expression profile for this gene

Gene-level expression profile

Raw TPM values

Expression profile of isoforms

A heatmap representing isoforms with TPM > 0 in at least one sample. Expression profiles were are clustered based on the spearman correlation