Gene loci information

Isoforms of this gene

  • There are 19 isoforms that are expressed from this gene.
  • The longest transcript is g7608.t23
  • List of isoforms

g7608.t1, g7608.t2, g7608.t8, g7608.t10, g7608.t11, g7608.t12, g7608.t14, g7608.t15, g7608.t16, g7608.t17, g7608.t18, g7608.t20, g7608.t21, g7608.t22, g7608.t23, g7608.t25, g7608.t27, g7608.t28, g7608.t29

The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively.

KEGG

Orthology

Pathway

  • This gene belongs to the following 1 pathways
ko04214

Gene conservation patterns

Diptera wide analysis

The Orthogroup for the longest transcript (g7608.t23) is OG0000206. Other genes in this orthogroup contains the following. This list is ordered by phylogeny determined by OrthoFinder analysis. Genes from ENSEMBL are linked to their corresponding pages. For P. nubifer and P. vanderplanki, they are linked to the Midgebase1 and Midgebase2 pages.

Conservation

Organism Abb. ID No. Orthologs Ortholog ID
Atta cephalotes ACEPH 2 XP_012058818.1, XP_012055505.1
Apis mellifera AMELL 2 GB50555-PA, GB40232-PA
Culicoides sonorensis CSONO 5 CSON012169-2, CSON010059-1, CSON011844-1, CSON001153-1, CSON012110-1
Polypedilum nubifer PNUBI 3 Pn.15264, Pn.15200, Pn.10991
Polypedilum vanderplanki PVAND 3 g1171.t11, g8572.t1, g7608.t23
Polypedilum pembai PPEMB 3 g3979.t1, g5869.t1, g14872.t1
Belgica antarctica BANTA 2 IU25_10814-mRNA-1, IU25_06573-mRNA-1
Clunio marinus CMARI 3 CRL03550.1, CRK88157.1, CRK95606.1
Aedes aegypti lvpagwg AAEGYL 3 AAEL019408-PA, AAEL013528-PA, AAEL025567-PA
Culex quinquefasciatus quinquefasciatus CQUINQ 3 EDS33918.1, EDS38472.1, EDS35892.1
Culex quinquefasciatus CQUIN 3 CPIJ003399-PA, CPIJ009679-PA, CPIJ011413-PA
Anopheles atroparvus AATRO 3 AATE011031-PA, AATE003063-PA, AATE017901-PA
Anopheles sinensis china ASINEC 2 ASIC019495-PA, ASIC003971-PA
Anopheles dirus ADIRU 3 ADIR015901-PA, ADIR002293-PA, ADIR003940-PA
Anopheles farauti AFARA 3 AFAF000369-PA, AFAF006151-PA, AFAF007734-PA
Anopheles epiroticus AEPIR 3 AEPI006321-PA, AEPI010039-PA, AEPI006305-PA
Anopheles christyi ACHRI 3 ACHR006359-PA, ACHR000911-PA, ACHR001360-PA
Anopheles merus AMERU 3 AMEM005607-PA, AMEM003273-PA, AMEM013305-PA
Anopheles melas AMELA 4 AMEC013869-PA, AMEC008374-PA, AMEC009547-PA, AMEC005283-PA
Anopheles arabiensis AARAB 3 AARA008108-PA, AARA005487-PA, AARA010717-PA
Anopheles coluzzii ACOLU 3 ACOM023006-PA, ACOM042412-PA, ACOM029790-PA
Anopheles coluzzii ngousso ACOLUN 3 ACON011054-PA, ACON007543-PA, ACON000396-PA
Anopheles gambiae AGAMB 3 AGAP000396-PA, AGAP011054-PA, AGAP007543-PA
Anopheles quadriannulatus AQUAD 3 AQUA010161-PA, AQUA004384-PA, AQUA001169-PA
Anopheles minimus AMINI 3 AMIN005644-PA, AMIN008534-PA, AMIN015773-PA
Anopheles culicifacies ACULI 3 ACUA012901-PA, ACUA011523-PA, ACUA010154-PA
Anopheles funestus AFUNE 3 AFUN009958-PA, AFUN005725-PA, AFUN008635-PA
Anopheles stephensi indian ASTEPI 3 ASTEI07810-PA, ASTEI01450-PA, ASTEI05818-PA
Anopheles stephensi ASTEP 3 ASTE005407-PA, ASTE003367-PA, ASTE002355-PA
Anopheles albimanus AALBI 3 AALB010353-PA, AALB015812-PA, AALB006519-PA
Anopheles darlingi ADARL 3 ADAC004923-PA, ADAC007846-PA, ADAC000247-PA
Drosophila willistoni DWILL 6 FBpp0248564, FBpp0245723, FBpp0254339, FBpp0249734, FBpp0248794, FBpp0242129
Drosophila pseudoobscura DPSEU 4 FBpp0275377, FBpp0287052, FBpp0330121, FBpp0283295
Drosophila persimilis DPERS 4 FBpp0185037, FBpp0180427, FBpp0177808, FBpp0191023
Drosophila ananassae DANAN 4 FBpp0122594, FBpp0119124, FBpp0127453, FBpp0126862
Drosophila melanogaster DMELA 4 FBpp0082927, FBpp0072852, FBpp0075397, FBpp0073594
Drosophila sechellia DSECH 4 FBpp0196001, FBpp0193098, FBpp0206993, FBpp0198425
Drosophila simulans DSIMU 4 FBpp0218627, FBpp0215517, FBpp0212123, FBpp0212933
Drosophila erecta DEREC 4 FBpp0133444, FBpp0135314, FBpp0136318, FBpp0134431
Drosophila yakuba DYAKU 4 FBpp0265362, FBpp0262072, FBpp0270273, FBpp0267240
Drosophila virilis DVIRI 4 FBpp0227308, FBpp0226321, FBpp0237234, FBpp0230171
Drosophila mojavensis DMOJA 4 FBpp0165322, FBpp0383965, FBpp0172030, FBpp0165853
Drosophila grimshawi DGRIM 4 FBpp0404604, FBpp0148322, FBpp0151393, FBpp0149892
Lucilia cuprina LCUPR 3 KNC27163, KNC28338, KNC28658
Musca domestica MDOME 4 MDOA008404-PA, MDOA007246-PA, MDOA013898-PA, MDOA009223-PA
Stomoxys calcitrans SCALC 3 SCAU001380-PB, SCAU016633-PA, SCAU012806-PA
Glossina brevipalpis GBREV 5 GBRI026459-PA, GBRI015495-PA, GBRI015236-PA, GBRI006781-PA, GBRI000834-PA
Glossina palpalis GPALP 3 GPPI019240-PA, GPPI030027-PA, GPPI050670-PA
Glossina austeni GAUST 5 GAUT046532-PA, GAUT002371-PA, GAUT004066-PA, GAUT052014-PA, GAUT030083-PA
Glossina pallidipes GPALL 4 GPAI046442-PA, GPAI040542-PA, GPAI000910-PA, GPAI019208-PA
Glossina morsitans GMORS 4 GMOY000509-PA, GMOY013290-PA, GMOY006085-PA, GMOY008040-PA

Gene tree

Chironomidae-wide analysis

The Orthogroup for the longest transcript (g7608.t23) is OG0000439. Other genes in this orthogroup contains the following. [This data uses ab initio gene models predicted in Yoshida et al 2022, so most genes are not registered in public databases. Please contact the authors for more information on these data.]

Conservation

Organism Abb. ID Ortholog ID
Podonomus sp PODON TRINITY_DN6247_c0_g1_i2.p1, TRINITY_DN13278_c1_g1_i6.p1, TRINITY_DN89363_c0_g1_i1.p1, TRINITY_DN31267_c0_g1_i3.p1
Parochlus steinenii PSTEI PSG03343, PSG06551, PSG09498
Trissopelopia nemorum TNEMO TRINITY_DN375_c0_g1_i3.p1, TRINITY_DN5083_c0_g1_i2.p1, TRINITY_DN2627_c0_g1_i5.p1
Paraheptagyia tonnoiri PTONN TRINITY_DN502_c0_g1_i3.p1, TRINITY_DN361_c0_g2_i1.p1
Telmatogeton pecinata TPECI TRINITY_DN12141_c0_g1_i2.p1, TRINITY_DN16834_c0_g1_i1.p1, TRINITY_DN40336_c0_g1_i1.p1, TRINITY_DN1456_c0_g1_i2.p1
Cricotopus draysoni CDRAY TRINITY_DN94613_c0_g1_i1.p1, TRINITY_DN93010_c0_g1_i1.p1, TRINITY_DN5431_c0_g1_i1.p1, TRINITY_DN69872_c0_g1_i1.p1
Clunio marinus CMARI CRL03550.1, CRK88157.1, CRK95606.1
Cardiocladius sp CARDI TRINITY_DN1869_c0_g1_i2.p1, TRINITY_DN32049_c0_g1_i1.p1, TRINITY_DN997_c0_g1_i3.p1, TRINITY_DN47990_c0_g1_i1.p1
Belgica antarctica BANTA IU25_10814-mRNA-1, IU25_06573-mRNA-1
Kiefferophyes invenustulus KINVE TRINITY_DN67511_c1_g1_i1.p1, TRINITY_DN217038_c0_g1_i1.p1, TRINITY_DN89264_c0_g2_i1.p1, TRINITY_DN173305_c0_g1_i1.p1, TRINITY_DN4793_c0_g2_i1.p1, TRINITY_DN20635_c0_g1_i4.p1, TRINITY_DN76442_c1_g1_i1.p2, TRINITY_DN67511_c2_g1_i1.p1, TRINITY_DN3321_c0_g1_i4.p2, TRINITY_DN67726_c0_g1_i1.p1
Chironomus riparius CRIPA g3297.t1, g16710.t1, g17511.t1
Chironomus columbiensis CCOLU TRINITY_DN23710_c0_g1_i1.p1, TRINITY_DN46106_c0_g1_i3.p1, TRINITY_DN23710_c0_g2_i1.p1, TRINITY_DN21887_c0_g1_i1.p1, TRINITY_DN5006_c0_g1_i3.p1, TRINITY_DN14027_c0_g1_i1.p1, TRINITY_DN61509_c0_g1_i1.p1, TRINITY_DN22028_c0_g2_i1.p1, TRINITY_DN712_c0_g1_i2.p1, TRINITY_DN14027_c0_g2_i1.p1, TRINITY_DN14195_c0_g1_i1.p1, TRINITY_DN34701_c0_g1_i2.p1
Chironomus tentans CTENT g13655.t1, g14431.t1, g10963.t1
Chironomus dilutus CDILU TRINITY_DN8727_c1_g1_i7.p1, TRINITY_DN39924_c0_g1_i1.p1, TRINITY_DN3039_c0_g1_i2.p1
Polypedilum nubifer PNUBI Pn.15264, Pn.15200, Pn.10991
Polypedilum vanderplanki PVAND g1171.t11, g8572.t1, g7608.t23
Polypedilum pembai PPEMB g3979.t1, g5869.t1, g14872.t1
Culicoides sonorensis CSONO CSON012169-2, CSON010059-1, CSON011844-1, CSON001153-1, CSON012110-1
Aedes aegypti lvpagwg AAEGYL AAEL019408-PA, AAEL013528-PA, AAEL025567-PA
Anopheles gambiae AGAMB AGAP000396-PA, AGAP011054-PA, AGAP007543-PA

Gene tree

Expression profile for this gene

Gene-level expression profile

Raw TPM values

Expression profile of isoforms

A heatmap representing isoforms with TPM > 0 in at least one sample. Expression profiles were are clustered based on the spearman correlation