Gene loci information

Isoforms of this gene

  • There are 2 isoforms that are expressed from this gene.
  • The longest transcript is g13117.t1
  • List of isoforms

g13117.t1, g13117.t2

The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively.

KEGG

Orthology

Pathway

  • This gene belongs to the following 1 pathways
ko00073
ko04146
ko04212

Gene conservation patterns

Diptera wide analysis

The Orthogroup for the longest transcript (g13117.t1) is OG0000064. Other genes in this orthogroup contains the following. This list is ordered by phylogeny determined by OrthoFinder analysis. Genes from ENSEMBL are linked to their corresponding pages. For P. nubifer and P. vanderplanki, they are linked to the Midgebase1 and Midgebase2 pages.

Conservation

Organism Abb. ID No. Orthologs Ortholog ID
Atta cephalotes ACEPH 5 XP_012057002.1, XP_012059579.1, XP_012056946.1, XP_012057053.1, XP_012064082.1
Apis mellifera AMELL 4 GB49323-PA, GB52087-PA, GB50627-PA, GB49380-PA
Culicoides sonorensis CSONO 17 CSON015336-1, CSON001778-1, CSON010722-1, CSON004586-1, CSON008319-1, CSON007194-1, CSON010089-1, CSON002078-1, CSON009358-1, CSON015159-1, CSON006190-1, CSON006760-1, CSON009733-1, CSON010090-1, CSON000064-1, CSON006189-1, CSON011336-1
Polypedilum nubifer PNUBI 6 Pn.08672, Pn.11958, Pn.10226, Pn.08671, Pn.04888, Pn.04718
Polypedilum vanderplanki PVAND 5 g8965.t1, g3715.t1, g11420.t1, g13117.t1, g6626.t1
Polypedilum pembai PPEMB 4 g7004.t1, g5104.t1, g408.t1, g3329.t1
Belgica antarctica BANTA 4 IU25_02533-mRNA-1, IU25_09737-mRNA-1, IU25_08924-mRNA-1, IU25_06272-mRNA-1
Clunio marinus CMARI 6 CRL00357.1, CRL04379.1, CRL06850.1, CRL05837.1, CRK97592.1, CRL06955.1
Aedes aegypti lvpagwg AAEGYL 6 AAEL007218-PB, AAEL007220-PA, AAEL006774-PA, AAEL001747-PB, AAEL013802-PA, AAEL007298-PB
Culex quinquefasciatus quinquefasciatus CQUINQ 5 EDS27091.1, EDS26914.1, EDS41640.1, EDS35447.1, EDS35448.1
Culex quinquefasciatus CQUIN 5 CPIJ010832-PA, CPIJ010831-PA, CPIJ018289-PA, CPIJ017921-PA, CPIJ014976-PA
Anopheles atroparvus AATRO 6 AATE005533-PA, AATE018229-PA, AATE017356-PA, AATE009706-PA, AATE000011-PA, AATE016107-PA
Anopheles sinensis china ASINEC 5 ASIC005001-PA, ASIC011708-PA, ASIC011707-PA, ASIC003946-PA, ASIC011709-PA
Anopheles dirus ADIRU 4 ADIR007470-PA, ADIR009639-PA, ADIR009638-PA, ADIR011695-PA
Anopheles farauti AFARA 5 AFAF015663-PA, AFAF008370-PA, AFAF007680-PA, AFAF017948-PA, AFAF010317-PA
Anopheles epiroticus AEPIR 4 AEPI002190-PA, AEPI002929-PA, AEPI002676-PA, AEPI002675-PA
Anopheles christyi ACHRI 3 ACHR009609-PA, ACHR007366-PA, ACHR003978-PA
Anopheles merus AMERU 6 AMEM002836-PA, AMEM008778-PA, AMEM008254-PA, AMEM000627-PA, AMEM014899-PA, AMEM012339-PA
Anopheles melas AMELA 6 AMEC015267-PA, AMEC017194-PA, AMEC013732-PA, AMEC006258-PA, AMEC003987-PA, AMEC002232-PA
Anopheles arabiensis AARAB 5 AARA017326-PA, AARA010209-PA, AARA018115-PA, AARA017325-PA, AARA017327-PA
Anopheles coluzzii ACOLU 5 ACOM024858-PA, ACOM031922-PA, ACOM040380-PA, ACOM024857-PA, ACOM024860-PA
Anopheles coluzzii ngousso ACOLUN 5 ACON005986-PA, ACON011736-PA, ACON005984-PB, ACON005985-PA, ACON009690-PA
Anopheles gambiae AGAMB 5 AGAP011736-PA, AGAP009690-PA, AGAP005985-PA, AGAP005984-PB, AGAP005986-PA
Anopheles quadriannulatus AQUAD 6 AQUA017266-PA, AQUA005479-PA, AQUA017267-PA, AQUA005478-PA, AQUA002726-PA, AQUA017268-PA
Anopheles minimus AMINI 4 AMIN005339-PA, AMIN008721-PA, AMIN010945-PA, AMIN008720-PA
Anopheles culicifacies ACULI 6 ACUA014758-PA, ACUA007281-PA, ACUA016056-PA, ACUA002629-PA, ACUA022246-PA, ACUA011032-PA
Anopheles funestus AFUNE 5 AFUN020753-PA, AFUN010139-PA, AFUN021474-PA, AFUN021472-PA, AFUN021473-PA
Anopheles stephensi indian ASTEPI 4 ASTEI09177-PA, ASTEI08853-PA, ASTEI11762-PA, ASTEI06327-PA
Anopheles stephensi ASTEP 4 ASTE004845-PA, ASTE004710-PA, ASTE004709-PA, ASTE001173-PA
Anopheles albimanus AALBI 7 AALB008551-PA, AALB004889-PA, AALB007096-PA, AALB003300-PA, AALB001187-PA, AALB007095-PA, AALB001186-PA
Anopheles darlingi ADARL 6 ADAC006947-PA, ADAC002137-PA, ADAC002136-PA, ADAC000188-PA, ADAC002138-PA, ADAC002134-PA
Drosophila willistoni DWILL 8 FBpp0380058, FBpp0239795, FBpp0251471, FBpp0251509, FBpp0240339, FBpp0240030, FBpp0376527, FBpp0374389
Drosophila pseudoobscura DPSEU 10 FBpp0282640, FBpp0336596, FBpp0282641, FBpp0275752, FBpp0331222, FBpp0282642, FBpp0283893, FBpp0281115, FBpp0338214, FBpp0282639
Drosophila persimilis DPERS 10 FBpp0191289, FBpp0191298, FBpp0176187, FBpp0191297, FBpp0191288, FBpp0187393, FBpp0191300, FBpp0191299, FBpp0181057, FBpp0175896
Drosophila ananassae DANAN 9 FBpp0346336, FBpp0121921, FBpp0120241, FBpp0120252, FBpp0120820, FBpp0120256, FBpp0114590, FBpp0120253, FBpp0120251
Drosophila melanogaster DMELA 9 FBpp0086254, FBpp0099966, FBpp0083231, FBpp0079296, FBpp0082780, FBpp0082779, FBpp0084714, FBpp0290087, FBpp0082074
Drosophila sechellia DSECH 10 FBpp0192530, FBpp0207493, FBpp0208351, FBpp0193750, FBpp0196649, FBpp0196651, FBpp0203191, FBpp0198522, FBpp0196650, FBpp0207492
Drosophila simulans DSIMU 9 FBpp0221955, FBpp0218976, FBpp0216406, FBpp0217517, FBpp0314496, FBpp0217516, FBpp0218975, FBpp0217518, FBpp0318183
Drosophila erecta DEREC 9 FBpp0143838, FBpp0140288, FBpp0130591, FBpp0140277, FBpp0369892, FBpp0135679, FBpp0139165, FBpp0142149, FBpp0140266
Drosophila yakuba DYAKU 9 FBpp0269593, FBpp0270645, FBpp0269591, FBpp0269535, FBpp0269592, FBpp0263794, FBpp0255495, FBpp0256818, FBpp0269534
Drosophila virilis DVIRI 13 FBpp0237090, FBpp0238812, FBpp0235861, FBpp0400401, FBpp0234792, FBpp0395011, FBpp0237089, FBpp0395077, FBpp0237013, FBpp0394618, FBpp0225416, FBpp0395304, FBpp0238800
Drosophila mojavensis DMOJA 6 FBpp0387605, FBpp0389662, FBpp0173593, FBpp0171653, FBpp0170506, FBpp0389353
Drosophila grimshawi DGRIM 8 FBpp0417731, FBpp0154070, FBpp0154839, FBpp0156982, FBpp0413361, FBpp0157583, FBpp0157603, FBpp0410022
Lucilia cuprina LCUPR 4 KNC24974, KNC24212, KNC32585, KNC24227
Musca domestica MDOME 6 MDOA001315-PA, MDOA015454-PB, MDOA010104-PA, MDOA006369-PA, MDOA006317-PA, MDOA015131-PA
Stomoxys calcitrans SCALC 5 SCAU009684-PA, SCAU016583-PA, SCAU005479-PA, SCAU012566-PA, SCAU004122-PA
Glossina brevipalpis GBREV 6 GBRI029939-PA, GBRI008722-PA, GBRI019479-PA, GBRI041143-PA, GBRI041870-PA, GBRI029940-PA
Glossina palpalis GPALP 5 GPPI005690-PA, GPPI016972-PA, GPPI021885-PA, GPPI046547-PA, GPPI033160-PA
Glossina austeni GAUST 5 GAUT044111-PA, GAUT010280-PA, GAUT049400-PA, GAUT013585-PA, GAUT035972-PA
Glossina pallidipes GPALL 5 GPAI005689-PA, GPAI042038-PA, GPAI029369-PA, GPAI025550-PA, GPAI003007-PA
Glossina morsitans GMORS 5 GMOY009401-PA, GMOY003427-PA, GMOY009983-PA, GMOY011618-PA, GMOY002004-PA

Gene tree

Chironomidae-wide analysis

The Orthogroup for the longest transcript (g13117.t1) is OG0007641. Other genes in this orthogroup contains the following. [This data uses ab initio gene models predicted in Yoshida et al 2022, so most genes are not registered in public databases. Please contact the authors for more information on these data.]

Conservation

Organism Abb. ID Ortholog ID
Podonomus sp PODON TRINITY_DN3347_c0_g1_i1.p1
Parochlus steinenii PSTEI PSG09775
Trissopelopia nemorum TNEMO TRINITY_DN35864_c0_g1_i1.p1, TRINITY_DN34259_c0_g1_i1.p1, TRINITY_DN4772_c0_g1_i11.p1, TRINITY_DN33774_c0_g1_i1.p1
Paraheptagyia tonnoiri PTONN TRINITY_DN444_c0_g1_i3.p1
Telmatogeton pecinata TPECI none
Cricotopus draysoni CDRAY none
Clunio marinus CMARI none
Cardiocladius sp CARDI TRINITY_DN2341_c0_g1_i3.p1
Belgica antarctica BANTA IU25_02533-mRNA-1
Kiefferophyes invenustulus KINVE none
Chironomus riparius CRIPA g3202.t1
Chironomus columbiensis CCOLU TRINITY_DN70979_c0_g1_i1.p1, TRINITY_DN75498_c0_g1_i1.p1
Chironomus tentans CTENT g13677.t1, g12653.t1
Chironomus dilutus CDILU none
Polypedilum nubifer PNUBI Pn.04888
Polypedilum vanderplanki PVAND g13117.t1
Polypedilum pembai PPEMB g7004.t1
Culicoides sonorensis CSONO CSON000064-1, CSON006190-1, CSON006189-1
Aedes aegypti lvpagwg AAEGYL AAEL013802-PA
Anopheles gambiae AGAMB AGAP009690-PA

Gene tree

Expression profile for this gene

Gene-level expression profile

Raw TPM values

Expression profile of isoforms

A heatmap representing isoforms with TPM > 0 in at least one sample. Expression profiles were are clustered based on the spearman correlation