Gene loci information

Isoforms of this gene

  • There are 15 isoforms that are expressed from this gene.
  • The longest transcript is g13236.t1
  • List of isoforms

g13236.t1, g13236.t3, g13236.t4, g13236.t5, g13236.t10, g13236.t12, g13236.t13, g13236.t14, g13236.t16, g13236.t18, g13236.t20, g13236.t23, g13236.t24, g13236.t25, g13236.t26

The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively.

KEGG

Orthology

Pathway

  • This gene belongs to the following 1 pathways
ko04613
ko05034
ko05131
ko05202
ko05322

This gene has too many mapped pathways (>3). Please look at the original KEGG entry above for pathway visualization.

Gene conservation patterns

Diptera wide analysis

The Orthogroup for the longest transcript (g13236.t1) is OG0000022. Other genes in this orthogroup contains the following. This list is ordered by phylogeny determined by OrthoFinder analysis. Genes from ENSEMBL are linked to their corresponding pages. For P. nubifer and P. vanderplanki, they are linked to the Midgebase1 and Midgebase2 pages.

Conservation

Organism Abb. ID No. Orthologs Ortholog ID
Atta cephalotes ACEPH 7 XP_012063566.1, XP_012057684.1, XP_012056042.1, XP_012063565.1, XP_012055713.1, XP_012055629.1, XP_012059087.1
Apis mellifera AMELL 6 GB47380-PA, GB47504-PA, GB54085-PA, GB51499-PA, GB54084-PA, GB47486-PA
Culicoides sonorensis CSONO 1 CSON006310-1
Polypedilum nubifer PNUBI 3 Pn.03511, Pn.07345, Pn.06838
Polypedilum vanderplanki PVAND 24 g2451.t1, g5930.t1, g6758.t1, g2447.t1, g6806.t1, g8467.t1, g11824.t1, g8459.t1, g6761.t1, g8903.t1, g8469.t1, g8296.t1, g7430.t1, g7416.t1, g12966.t1, g2441.t1, g7410.t1, g13236.t1, g4523.t7, g7401.t1, g8248.t1, g11868.t1, g6802.t1, g6810.t1
Polypedilum pembai PPEMB 11 g3111.t1, g3150.t1, g3110.t1, g1480.t1, g3968.t1, g3722.t1, g1149.t1, g11127.t1, g9294.t1, g11971.t1, g2757.t1
Belgica antarctica BANTA 5 IU25_00038-mRNA-1, IU25_08470-mRNA-1, IU25_00100-mRNA-1, IU25_00098-mRNA-1, IU25_13109-mRNA-1
Clunio marinus CMARI 7 CRL07050.1, CRL07064.1, CRL07059.1, CRK96651.1, CRL01270.1, CRL07074.1, CRL00900.1
Aedes aegypti lvpagwg AAEGYL 32 AAEL021182-PA, AAEL020985-PA, AAEL009296-PA, AAEL022066-PA, AAEL003685-PB, AAEL021903-PA, AAEL021821-PA, AAEL027861-PA, AAEL020370-PA, AAEL021142-PA, AAEL012072-PB, AAEL020107-PA, AAEL011424-PA, AAEL007783-PB, AAEL021946-PA, AAEL004001-PA, AAEL021161-PA, AAEL021601-PA, AAEL009284-PA, AAEL020810-PA, AAEL021112-PA, AAEL006158-PA, AAEL020755-PA, AAEL020629-PA, AAEL021205-PA, AAEL021327-PA, AAEL021038-PA, AAEL020763-PA, AAEL021049-PA, AAEL000492-PB, AAEL019635-PA, AAEL021754-PA
Culex quinquefasciatus quinquefasciatus CQUINQ 31 EDS31904.1, EDS37397.1, EDS41237.1, EDS41247.1, EDS37375.1, EDS37347.1, EDS37379.1, EDS37357.1, EDS37352.1, EDS37401.1, EDS37362.1, EDS44786.1, EDS37421.1, EDS37370.1, EDS45503.1, EDS37388.1, EDS34378.1, EDS37417.1, EDS41243.1, EDS37386.1, EDS37413.1, EDS26248.1, EDS37409.1, EDS28442.1, EDS37405.1, EDS37392.1, EDS41772.1, EDS37366.1, EDS41769.1, EDS34369.1, EDS26759.1
Culex quinquefasciatus CQUIN 31 CPIJ012437-PA, CPIJ008605-PA, CPIJ014769-PA, CPIJ012418-PA, CPIJ012389-PA, CPIJ014759-PA, CPIJ018900-PA, CPIJ012407-PA, CPIJ012398-PA, CPIJ015009-PA, CPIJ014765-PA, CPIJ015006-PA, CPIJ017187-PA, CPIJ012394-PA, CPIJ012402-PA, CPIJ017395-PA, CPIJ012429-PA, CPIJ012379-PA, CPIJ012384-PA, CPIJ012453-PA, CPIJ010364-PA, CPIJ012449-PA, CPIJ012445-PA, CPIJ012441-PA, CPIJ012420-PA, CPIJ012433-PA, CPIJ010355-PA, CPIJ006050-PA, CPIJ005872-PA, CPIJ012424-PA, CPIJ012411-PA
Anopheles atroparvus AATRO 1 AATE018569-PA
Anopheles sinensis china ASINEC 3 ASIC006970-PA, ASIC018092-PA, ASIC017981-PA
Anopheles dirus ADIRU 4 ADIR002719-PA, ADIR015597-PA, ADIR001876-PA, ADIR001583-PA
Anopheles farauti AFARA 4 AFAF011145-PA, AFAF014931-PA, AFAF009137-PA, AFAF012439-PA
Anopheles epiroticus AEPIR 6 AEPI009159-PA, AEPI002220-PA, AEPI015034-PA, AEPI011137-PA, AEPI015033-PA, AEPI014069-PA
Anopheles christyi ACHRI 5 ACHR007054-PA, ACHR005178-PA, ACHR006350-PA, ACHR014087-PA, ACHR003056-PA
Anopheles merus AMERU 5 AMEM019021-PA, AMEM000842-PA, AMEM014318-PA, AMEM008337-PA, AMEM013840-PA
Anopheles melas AMELA 4 AMEC002494-PA, AMEC001928-PA, AMEC008104-PA, AMEC023121-PA
Anopheles arabiensis AARAB 6 AARA018097-PA, AARA015884-PA, AARA003622-PA, AARA015882-PA, AARA000422-PA, AARA014434-PA
Anopheles coluzzii ACOLU 5 ACOM029232-PA, ACOM023780-PA, ACOM042590-PA, ACOM030600-PA, ACOM026454-PA
Anopheles coluzzii ngousso ACOLUN 10 ACON012573-PA, ACON012572-PA, ACON012197-PA, ACON012709-PA, ACON012559-PA, ACON001813-PA, ACON003910-PA, ACON005024-PA, ACON007508-PA, ACON012196-PA
Anopheles gambiae AGAMB 11 AGAP012709-PA, AGAP012572-PA, AGAP005025-PA, AGAP005024-PA, AGAP012196-PA, AGAP007508-PA, AGAP001813-PA, AGAP012559-PA, AGAP003910-PA, AGAP012573-PA, AGAP012197-PA
Anopheles quadriannulatus AQUAD 6 AQUA016029-PA, AQUA016027-PA, AQUA004414-PA, AQUA004072-PA, AQUA014106-PA, AQUA011937-PA
Anopheles minimus AMINI 4 AMIN000411-PA, AMIN004080-PA, AMIN015676-PA, AMIN015674-PA
Anopheles culicifacies ACULI 6 ACUA029042-PA, ACUA006657-PA, ACUA016418-PA, ACUA000069-PA, ACUA003626-PA, ACUA001396-PA
Anopheles funestus AFUNE 6 AFUN019096-PA, AFUN010049-PA, AFUN003801-PA, AFUN020038-PA, AFUN015755-PA, AFUN020197-PA
Anopheles stephensi indian ASTEPI 10 ASTEI11627-PA, ASTEI02500-PA, ASTEI11566-PA, ASTEI11263-PA, ASTEI01808-PA, ASTEI10806-PA, ASTEI10803-PA, ASTEI05245-PA, ASTEI02499-PA, ASTEI10871-PA
Anopheles stephensi ASTEP 5 ASTE015855-PA, ASTE009251-PA, ASTE015854-PA, ASTE009701-PA, ASTE006606-PA
Anopheles albimanus AALBI 5 AALB002213-PA, AALB015692-PA, AALB001911-PA, AALB004561-PA, AALB015686-PA
Anopheles darlingi ADARL 4 ADAC006124-PA, ADAC006365-PA, ADAC001855-PA, ADAC005675-PA
Drosophila willistoni DWILL 10 FBpp0375896, FBpp0239865, FBpp0254174, FBpp0377831, FBpp0248036, FBpp0253024, FBpp0248300, FBpp0254305, FBpp0374412, FBpp0241545
Drosophila pseudoobscura DPSEU 5 FBpp0287752, FBpp0333509, FBpp0272861, FBpp0277914, FBpp0329025
Drosophila persimilis DPERS 12 FBpp0181082, FBpp0190938, FBpp0181510, FBpp0190657, FBpp0183808, FBpp0188068, FBpp0188062, FBpp0188065, FBpp0180775, FBpp0188058, FBpp0181908, FBpp0186480
Drosophila ananassae DANAN 21 FBpp0346411, FBpp0345071, FBpp0124714, FBpp0124800, FBpp0124861, FBpp0118912, FBpp0122363, FBpp0123357, FBpp0119079, FBpp0117097, FBpp0352150, FBpp0341858, FBpp0348313, FBpp0125392, FBpp0126047, FBpp0123551, FBpp0125457, FBpp0122174, FBpp0116888, FBpp0119114, FBpp0343147
Drosophila melanogaster DMELA 26 FBpp0091097, FBpp0091067, FBpp0091079, FBpp0091061, FBpp0091051, FBpp0091085, FBpp0071280, FBpp0091112, FBpp0078649, FBpp0091053, FBpp0091058, FBpp0085250, FBpp0091056, FBpp0091064, FBpp0091073, FBpp0091106, FBpp0091082, FBpp0091103, FBpp0091076, FBpp0091100, FBpp0086787, FBpp0091094, FBpp0091088, FBpp0091109, FBpp0091091, FBpp0091070
Drosophila sechellia DSECH 42 FBpp0202429, FBpp0200000, FBpp0208138, FBpp0194601, FBpp0192625, FBpp0200793, FBpp0195106, FBpp0201217, FBpp0192658, FBpp0193188, FBpp0197585, FBpp0202948, FBpp0201193, FBpp0192519, FBpp0194670, FBpp0200828, FBpp0194616, FBpp0196930, FBpp0195059, FBpp0193862, FBpp0197709, FBpp0192643, FBpp0192661, FBpp0197650, FBpp0197874, FBpp0196610, FBpp0193130, FBpp0201228, FBpp0195153, FBpp0201147, FBpp0197756, FBpp0194673, FBpp0197734, FBpp0195020, FBpp0195103, FBpp0193185, FBpp0198394, FBpp0192282, FBpp0194675, FBpp0194656, FBpp0193551, FBpp0197757
Drosophila simulans DSIMU 4 FBpp0323186, FBpp0209370, FBpp0221721, FBpp0313116
Drosophila erecta DEREC 10 FBpp0134906, FBpp0135028, FBpp0131570, FBpp0143594, FBpp0137546, FBpp0129495, FBpp0139819, FBpp0138929, FBpp0131560, FBpp0370086
Drosophila yakuba DYAKU 4 FBpp0256338, FBpp0262422, FBpp0257555, FBpp0356914
Drosophila virilis DVIRI 21 FBpp0229865, FBpp0236954, FBpp0229582, FBpp0398105, FBpp0230761, FBpp0229725, FBpp0238120, FBpp0230530, FBpp0232822, FBpp0236969, FBpp0238109, FBpp0393592, FBpp0238115, FBpp0234174, FBpp0233002, FBpp0232818, FBpp0238124, FBpp0231492, FBpp0225306, FBpp0231648, FBpp0234228
Drosophila mojavensis DMOJA 13 FBpp0166201, FBpp0171093, FBpp0381302, FBpp0172659, FBpp0167548, FBpp0166110, FBpp0172663, FBpp0170393, FBpp0174074, FBpp0166470, FBpp0164096, FBpp0160475, FBpp0161930
Drosophila grimshawi DGRIM 29 FBpp0412247, FBpp0416715, FBpp0418193, FBpp0158906, FBpp0156572, FBpp0414188, FBpp0157478, FBpp0419428, FBpp0409908, FBpp0405781, FBpp0411894, FBpp0157782, FBpp0157419, FBpp0157067, FBpp0418233, FBpp0157240, FBpp0158855, FBpp0158629, FBpp0157410, FBpp0157655, FBpp0145395, FBpp0157238, FBpp0406336, FBpp0404073, FBpp0413635, FBpp0157375, FBpp0410507, FBpp0157250, FBpp0147842
Lucilia cuprina LCUPR 6 KNC31941, KNC23330, KNC26115, KNC22383, KNC23910, KNC27517
Musca domestica MDOME 6 MDOA008574-PA, MDOA008753-PA, MDOA001571-PB, MDOA005065-PB, MDOA005474-PA, MDOA016960-PA
Stomoxys calcitrans SCALC 3 SCAU014329-PA, SCAU013004-PA, SCAU011820-PA
Glossina brevipalpis GBREV 10 GBRI034634-PA, GBRI021304-PA, GBRI015623-PA, GBRI033989-PA, GBRI021728-PA, GBRI025840-PA, GBRI035178-PA, GBRI025836-PA, GBRI030097-PA, GBRI045054-PA
Glossina palpalis GPALP 8 GPPI026857-PA, GPPI032713-PA, GPPI015781-PA, GPPI033162-PA, GPPI025949-PA, GPPI031224-PA, GPPI021276-PA, GPPI041860-PA
Glossina austeni GAUST 11 GAUT049940-PA, GAUT024518-PA, GAUT047319-PA, GAUT046468-PA, GAUT000086-PA, GAUT006159-PA, GAUT004941-PA, GAUT045145-PA, GAUT000253-PA, GAUT040862-PA, GAUT029726-PA
Glossina pallidipes GPALL 8 GPAI013525-PA, GPAI044317-PA, GPAI030840-PA, GPAI009115-PA, GPAI003636-PA, GPAI008879-PA, GPAI043300-PA, GPAI013937-PA
Glossina morsitans GMORS 6 GMOY007564-PA, GMOY009714-PA, GMOY009328-PA, GMOY010595-PA, GMOY005741-PA, GMOY002746-PA

Gene tree

Chironomidae-wide analysis

The Orthogroup for the longest transcript (g13236.t1) is OG0000033. Other genes in this orthogroup contains the following. [This data uses ab initio gene models predicted in Yoshida et al 2022, so most genes are not registered in public databases. Please contact the authors for more information on these data.]

Conservation

Organism Abb. ID Ortholog ID
Podonomus sp PODON TRINITY_DN0_c279_g1_i1.p2, TRINITY_DN4824_c3_g1_i1.p1, TRINITY_DN360_c5_g1_i1.p3, TRINITY_DN22665_c0_g1_i7.p5, TRINITY_DN126797_c0_g1_i1.p1, TRINITY_DN1120_c1_g1_i1.p3, TRINITY_DN4824_c0_g2_i4.p2, TRINITY_DN1120_c13_g1_i1.p2, TRINITY_DN1120_c1_g3_i1.p3, TRINITY_DN1120_c27_g1_i1.p1, TRINITY_DN59493_c0_g1_i1.p1
Parochlus steinenii PSTEI PSG07419, PSG07399, PSG02936, PSG09612, PSG10720, PSG07316
Trissopelopia nemorum TNEMO TRINITY_DN19136_c1_g1_i1.p2, TRINITY_DN2686_c0_g1_i1.p1, TRINITY_DN17583_c1_g1_i1.p1, TRINITY_DN2686_c0_g3_i2.p1
Paraheptagyia tonnoiri PTONN TRINITY_DN9170_c1_g1_i2.p1, TRINITY_DN1100_c0_g1_i2.p1, TRINITY_DN9170_c0_g1_i1.p1, TRINITY_DN3578_c2_g2_i1.p1
Telmatogeton pecinata TPECI TRINITY_DN24000_c0_g1_i1.p2, TRINITY_DN0_c1611_g1_i1.p5, TRINITY_DN16159_c0_g2_i1.p1, TRINITY_DN60910_c0_g1_i1.p1, TRINITY_DN6193_c0_g1_i1.p1, TRINITY_DN33655_c0_g1_i2.p1, TRINITY_DN2359_c0_g3_i1.p1
Cricotopus draysoni CDRAY TRINITY_DN55432_c0_g1_i1.p1, TRINITY_DN89606_c0_g1_i1.p1, TRINITY_DN1337_c0_g1_i1.p1, TRINITY_DN50241_c0_g1_i1.p3, TRINITY_DN11199_c0_g1_i1.p1, TRINITY_DN109853_c0_g1_i1.p2, TRINITY_DN87036_c0_g1_i1.p1, TRINITY_DN7266_c0_g1_i1.p3, TRINITY_DN69851_c0_g1_i1.p1, TRINITY_DN3311_c7_g1_i1.p1, TRINITY_DN106245_c0_g1_i1.p1, TRINITY_DN113110_c0_g1_i1.p2, TRINITY_DN40055_c0_g1_i1.p1, TRINITY_DN34707_c0_g1_i1.p1, TRINITY_DN24146_c0_g1_i1.p1, TRINITY_DN94921_c0_g1_i1.p1, TRINITY_DN26619_c0_g1_i1.p1, TRINITY_DN88221_c0_g1_i1.p1, TRINITY_DN12337_c0_g1_i1.p1, TRINITY_DN45990_c0_g1_i1.p1, TRINITY_DN21167_c0_g1_i1.p2, TRINITY_DN94592_c0_g1_i1.p2, TRINITY_DN87971_c0_g1_i1.p1, TRINITY_DN25802_c0_g1_i1.p1
Clunio marinus CMARI CRL07050.1, CRL07064.1, CRL07059.1, CRK96651.1, CRL07074.1, CRL00900.1
Cardiocladius sp CARDI TRINITY_DN3786_c0_g1_i1.p1, TRINITY_DN36344_c0_g1_i1.p1, TRINITY_DN9775_c0_g1_i1.p1, TRINITY_DN1859_c1_g1_i1.p2, TRINITY_DN1859_c0_g1_i10.p1
Belgica antarctica BANTA IU25_00038-mRNA-1, IU25_08470-mRNA-1, IU25_00100-mRNA-1, IU25_00098-mRNA-1, IU25_13109-mRNA-1
Kiefferophyes invenustulus KINVE TRINITY_DN8327_c1_g1_i3.p1, TRINITY_DN221_c1_g1_i10.p1, TRINITY_DN75914_c0_g1_i4.p1, TRINITY_DN65527_c1_g1_i1.p1, TRINITY_DN50841_c0_g1_i6.p1, TRINITY_DN161174_c0_g1_i1.p1, TRINITY_DN22777_c2_g1_i1.p1, TRINITY_DN175064_c0_g1_i1.p5, TRINITY_DN40939_c0_g1_i1.p1, TRINITY_DN81472_c0_g1_i2.p1, TRINITY_DN221_c12_g2_i1.p1, TRINITY_DN6889_c0_g2_i1.p1, TRINITY_DN22777_c2_g2_i1.p1, TRINITY_DN221_c21_g1_i1.p3, TRINITY_DN246885_c0_g1_i1.p2, TRINITY_DN221_c12_g5_i1.p1, TRINITY_DN273062_c0_g1_i1.p1, TRINITY_DN221_c6_g1_i1.p2, TRINITY_DN22777_c4_g1_i1.p1, TRINITY_DN75914_c10_g1_i1.p1, TRINITY_DN37856_c0_g1_i1.p1, TRINITY_DN188762_c0_g1_i1.p1, TRINITY_DN235188_c0_g1_i2.p1, TRINITY_DN75914_c2_g1_i1.p1, TRINITY_DN201668_c1_g1_i1.p1, TRINITY_DN8327_c0_g1_i1.p1, TRINITY_DN22777_c0_g1_i3.p1, TRINITY_DN221_c12_g3_i1.p1, TRINITY_DN81472_c1_g1_i1.p2, TRINITY_DN86031_c0_g2_i1.p2, TRINITY_DN208708_c0_g1_i1.p1, TRINITY_DN86031_c0_g1_i1.p1, TRINITY_DN221_c12_g1_i1.p1
Chironomus riparius CRIPA g17035.t1, g14544.t1, g9525.t1, g14691.t1
Chironomus columbiensis CCOLU TRINITY_DN10257_c0_g1_i6.p1, TRINITY_DN5389_c0_g1_i6.p1, TRINITY_DN17163_c1_g1_i3.p1, TRINITY_DN17163_c0_g2_i2.p3, TRINITY_DN33224_c0_g1_i1.p1, TRINITY_DN60220_c0_g1_i1.p3, TRINITY_DN10076_c0_g1_i2.p1, TRINITY_DN17163_c1_g2_i1.p1, TRINITY_DN2576_c0_g2_i2.p1, TRINITY_DN10076_c2_g1_i1.p1, TRINITY_DN17163_c0_g1_i1.p1, TRINITY_DN10257_c0_g2_i1.p1, TRINITY_DN70051_c0_g1_i1.p1, TRINITY_DN10076_c1_g1_i1.p1, TRINITY_DN17293_c0_g1_i1.p1, TRINITY_DN40332_c0_g1_i1.p1
Chironomus tentans CTENT g11658.t1, g2719.t1, g13557.t1, g3378.t1, g17468.t1, g10879.t1, g11514.t1, g6959.t1, g136.t1, g10246.t1
Chironomus dilutus CDILU TRINITY_DN18519_c0_g1_i1.p1, TRINITY_DN41271_c0_g1_i1.p1, TRINITY_DN6436_c0_g2_i1.p1, TRINITY_DN1267_c0_g1_i2.p1, TRINITY_DN11114_c0_g1_i2.p1, TRINITY_DN1723_c0_g1_i4.p1, TRINITY_DN6436_c1_g1_i1.p3, TRINITY_DN1434_c0_g1_i2.p1, TRINITY_DN15764_c0_g1_i2.p1
Polypedilum nubifer PNUBI Pn.03511, Pn.07345, Pn.06838
Polypedilum vanderplanki PVAND g2451.t1, g5930.t1, g6758.t1, g2447.t1, g6806.t1, g8467.t1, g11824.t1, g8459.t1, g6761.t1, g8903.t1, g8469.t1, g8296.t1, g7430.t1, g7416.t1, g12966.t1, g2441.t1, g7410.t1, g13236.t1, g4523.t7, g7401.t1, g8248.t1, g11868.t1, g6802.t1, g6810.t1
Polypedilum pembai PPEMB g3111.t1, g3150.t1, g3110.t1, g1480.t1, g3968.t1, g3722.t1, g1149.t1, g11127.t1, g9294.t1, g11971.t1, g2757.t1
Culicoides sonorensis CSONO CSON006310-1
Aedes aegypti lvpagwg AAEGYL AAEL021182-PA, AAEL020107-PA, AAEL020985-PA, AAEL011424-PA, AAEL009296-PA, AAEL021946-PA, AAEL022066-PA, AAEL003685-PB, AAEL021161-PA, AAEL021903-PA, AAEL021601-PA, AAEL009284-PA, AAEL021112-PA, AAEL020810-PA, AAEL006158-PA, AAEL020755-PA, AAEL021821-PA, AAEL021205-PA, AAEL020629-PA, AAEL021327-PA, AAEL021038-PA, AAEL021049-PA, AAEL020370-PA, AAEL020763-PA, AAEL000492-PB, AAEL019635-PA, AAEL021754-PA, AAEL021142-PA, AAEL012072-PB
Anopheles gambiae AGAMB AGAP012709-PA, AGAP012572-PA, AGAP005025-PA, AGAP005024-PA, AGAP012196-PA, AGAP007508-PA, AGAP001813-PA, AGAP012559-PA, AGAP003910-PA, AGAP012573-PA, AGAP012197-PA

Gene tree

Expression profile for this gene

Gene-level expression profile

Raw TPM values

Expression profile of isoforms

A heatmap representing isoforms with TPM > 0 in at least one sample. Expression profiles were are clustered based on the spearman correlation